Incidental Mutation 'R1624:Vmn2r79'
| ID |
174883 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Vmn2r79
|
| Ensembl Gene |
ENSMUSG00000090362 |
| Gene Name |
vomeronasal 2, receptor 79 |
| Synonyms |
EG621430 |
| MMRRC Submission |
039661-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.092)
|
| Stock # |
R1624 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
7 |
| Chromosomal Location |
86645673-86687176 bp(+) (GRCm39) |
| Type of Mutation |
critical splice acceptor site |
| DNA Base Change (assembly) |
A to T
at 86653247 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000132478
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000164462]
[ENSMUST00000164462]
|
| AlphaFold |
E9Q067 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000164462
|
| SMART Domains |
Protein: ENSMUSP00000132478
Gene: ENSMUSG00000090362
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
18 |
N/A |
INTRINSIC |
|
Pfam:ANF_receptor
|
75 |
464 |
1.9e-31 |
PFAM |
|
Pfam:NCD3G
|
506 |
559 |
3.1e-21 |
PFAM |
|
Pfam:7tm_3
|
592 |
827 |
2.8e-53 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000164462
|
| SMART Domains |
Protein: ENSMUSP00000132478
Gene: ENSMUSG00000090362
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
18 |
N/A |
INTRINSIC |
|
Pfam:ANF_receptor
|
75 |
464 |
1.9e-31 |
PFAM |
|
Pfam:NCD3G
|
506 |
559 |
3.1e-21 |
PFAM |
|
Pfam:7tm_3
|
592 |
827 |
2.8e-53 |
PFAM |
|
| Meta Mutation Damage Score |
0.9755 |
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.3%
- 10x: 95.9%
- 20x: 91.4%
|
| Validation Efficiency |
99% (90/91) |
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 83 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 2510009E07Rik |
T |
C |
16: 21,472,496 (GRCm39) |
Y68C |
probably damaging |
Het |
| 6820408C15Rik |
A |
T |
2: 152,276,031 (GRCm39) |
H81L |
probably damaging |
Het |
| Acbd4 |
A |
G |
11: 102,994,785 (GRCm39) |
T48A |
probably damaging |
Het |
| Acp3 |
T |
A |
9: 104,197,200 (GRCm39) |
E146D |
probably benign |
Het |
| Acsm1 |
T |
A |
7: 119,251,796 (GRCm39) |
I307N |
probably damaging |
Het |
| Adcy4 |
T |
C |
14: 56,019,384 (GRCm39) |
T89A |
possibly damaging |
Het |
| Agl |
T |
C |
3: 116,580,895 (GRCm39) |
T356A |
probably benign |
Het |
| Ago1 |
A |
G |
4: 126,357,534 (GRCm39) |
I47T |
probably damaging |
Het |
| Akr1c6 |
T |
A |
13: 4,496,363 (GRCm39) |
Y75N |
probably benign |
Het |
| Anxa2 |
T |
A |
9: 69,386,990 (GRCm39) |
S92T |
probably benign |
Het |
| Arid4b |
T |
C |
13: 14,358,979 (GRCm39) |
S585P |
probably damaging |
Het |
| Arl4d |
T |
C |
11: 101,557,842 (GRCm39) |
S123P |
possibly damaging |
Het |
| Atad2 |
A |
T |
15: 57,963,415 (GRCm39) |
D1067E |
probably damaging |
Het |
| Brap |
C |
A |
5: 121,820,922 (GRCm39) |
T403K |
possibly damaging |
Het |
| Brwd1 |
A |
T |
16: 95,809,344 (GRCm39) |
N1895K |
possibly damaging |
Het |
| Ccdc187 |
T |
C |
2: 26,171,087 (GRCm39) |
T464A |
probably benign |
Het |
| Ccn6 |
G |
A |
10: 39,029,239 (GRCm39) |
R230W |
probably damaging |
Het |
| Cdh11 |
T |
C |
8: 103,391,233 (GRCm39) |
|
probably benign |
Het |
| Chd9 |
A |
T |
8: 91,725,163 (GRCm39) |
Y691F |
probably benign |
Het |
| Clhc1 |
A |
T |
11: 29,519,287 (GRCm39) |
I365F |
possibly damaging |
Het |
| Col11a1 |
A |
G |
3: 113,951,804 (GRCm39) |
Q1078R |
probably damaging |
Het |
| Creb3 |
G |
A |
4: 43,566,375 (GRCm39) |
V294I |
possibly damaging |
Het |
| Cspg4 |
T |
C |
9: 56,795,754 (GRCm39) |
I1163T |
probably damaging |
Het |
| Cyp3a57 |
A |
C |
5: 145,327,225 (GRCm39) |
|
probably null |
Het |
| Dnah3 |
A |
T |
7: 119,618,918 (GRCm39) |
I1661N |
probably damaging |
Het |
| Dpysl4 |
A |
C |
7: 138,669,469 (GRCm39) |
D49A |
probably damaging |
Het |
| Efhb |
T |
A |
17: 53,733,306 (GRCm39) |
I522F |
probably damaging |
Het |
| Epha4 |
T |
C |
1: 77,376,329 (GRCm39) |
T517A |
probably damaging |
Het |
| Fasn |
A |
G |
11: 120,703,937 (GRCm39) |
S1466P |
probably damaging |
Het |
| Fgd6 |
A |
T |
10: 93,973,298 (GRCm39) |
D1253V |
probably benign |
Het |
| Fjx1 |
G |
A |
2: 102,281,509 (GRCm39) |
A142V |
probably benign |
Het |
| Foxb1 |
T |
C |
9: 69,666,598 (GRCm39) |
T311A |
probably benign |
Het |
| Fpgs |
A |
G |
2: 32,581,200 (GRCm39) |
|
probably null |
Het |
| Gm10024 |
A |
G |
10: 77,547,606 (GRCm39) |
|
probably null |
Het |
| Gnat3 |
A |
T |
5: 18,208,841 (GRCm39) |
T182S |
possibly damaging |
Het |
| Igsf3 |
T |
A |
3: 101,362,543 (GRCm39) |
F875I |
probably benign |
Het |
| Kif13b |
A |
G |
14: 64,976,068 (GRCm39) |
E461G |
probably damaging |
Het |
| Kif23 |
A |
T |
9: 61,832,982 (GRCm39) |
|
probably null |
Het |
| Kntc1 |
G |
A |
5: 123,896,540 (GRCm39) |
R134Q |
possibly damaging |
Het |
| Krt33a |
A |
T |
11: 99,905,072 (GRCm39) |
Y145N |
probably damaging |
Het |
| Lama5 |
A |
G |
2: 179,848,551 (GRCm39) |
V313A |
probably benign |
Het |
| Lamb1 |
T |
C |
12: 31,328,651 (GRCm39) |
|
probably null |
Het |
| Megf6 |
G |
T |
4: 154,261,578 (GRCm39) |
V68L |
probably benign |
Het |
| Mtor |
C |
T |
4: 148,632,133 (GRCm39) |
L2336F |
probably damaging |
Het |
| Naglu |
T |
C |
11: 100,967,351 (GRCm39) |
S434P |
probably damaging |
Het |
| Ncoa7 |
T |
A |
10: 30,580,655 (GRCm39) |
H101L |
possibly damaging |
Het |
| Nlrc4 |
G |
A |
17: 74,752,184 (GRCm39) |
T733I |
possibly damaging |
Het |
| Nr3c2 |
A |
G |
8: 77,636,573 (GRCm39) |
E558G |
probably damaging |
Het |
| Nsun4 |
A |
T |
4: 115,891,397 (GRCm39) |
N327K |
probably benign |
Het |
| Or11g27 |
A |
G |
14: 50,771,100 (GRCm39) |
Y77C |
probably damaging |
Het |
| Or1x2 |
T |
C |
11: 50,917,952 (GRCm39) |
V41A |
probably damaging |
Het |
| Or2m13 |
T |
A |
16: 19,226,454 (GRCm39) |
Y104F |
probably benign |
Het |
| Or4f6 |
T |
A |
2: 111,838,877 (GRCm39) |
Y218F |
probably damaging |
Het |
| Or6b13 |
T |
C |
7: 139,781,864 (GRCm39) |
N273S |
probably damaging |
Het |
| Pdia2 |
T |
A |
17: 26,415,495 (GRCm39) |
I441F |
probably damaging |
Het |
| Phyh |
T |
C |
2: 4,930,494 (GRCm39) |
S74P |
probably benign |
Het |
| Pigo |
A |
G |
4: 43,024,661 (GRCm39) |
L146P |
probably damaging |
Het |
| Plce1 |
A |
G |
19: 38,713,219 (GRCm39) |
D1191G |
probably damaging |
Het |
| Plrg1 |
T |
C |
3: 82,975,301 (GRCm39) |
|
probably benign |
Het |
| Plrg1 |
G |
A |
3: 82,977,051 (GRCm39) |
R364Q |
probably damaging |
Het |
| Polr3b |
T |
C |
10: 84,515,669 (GRCm39) |
L614S |
probably damaging |
Het |
| Pramel16 |
A |
T |
4: 143,676,400 (GRCm39) |
C235S |
possibly damaging |
Het |
| Prrg4 |
A |
G |
2: 104,663,027 (GRCm39) |
V193A |
probably damaging |
Het |
| Prss16 |
T |
A |
13: 22,187,483 (GRCm39) |
E47V |
probably benign |
Het |
| Ptpru |
G |
A |
4: 131,499,861 (GRCm39) |
T1261I |
probably damaging |
Het |
| Pycard |
A |
G |
7: 127,591,970 (GRCm39) |
S124P |
possibly damaging |
Het |
| Riok1 |
C |
A |
13: 38,221,487 (GRCm39) |
D17E |
probably damaging |
Het |
| Scin |
T |
A |
12: 40,177,929 (GRCm39) |
Y102F |
probably benign |
Het |
| Scmh1 |
A |
G |
4: 120,386,425 (GRCm39) |
H655R |
probably damaging |
Het |
| Scyl2 |
A |
T |
10: 89,476,598 (GRCm39) |
N842K |
probably benign |
Het |
| Sec23b |
T |
A |
2: 144,409,049 (GRCm39) |
M211K |
probably benign |
Het |
| Serpina3i |
A |
C |
12: 104,234,897 (GRCm39) |
*409C |
probably null |
Het |
| Sgk2 |
G |
A |
2: 162,839,779 (GRCm39) |
R129H |
probably benign |
Het |
| Slc39a13 |
A |
G |
2: 90,898,871 (GRCm39) |
I80T |
probably damaging |
Het |
| Smarcad1 |
A |
G |
6: 65,029,631 (GRCm39) |
D73G |
probably benign |
Het |
| Spata18 |
A |
C |
5: 73,826,888 (GRCm39) |
T276P |
probably damaging |
Het |
| Srgap1 |
T |
G |
10: 121,691,278 (GRCm39) |
M319L |
probably benign |
Het |
| Stx7 |
T |
A |
10: 24,060,903 (GRCm39) |
V210E |
probably damaging |
Het |
| Tjp2 |
T |
A |
19: 24,108,776 (GRCm39) |
H112L |
probably benign |
Het |
| Tuba8 |
A |
T |
6: 121,197,385 (GRCm39) |
I16F |
probably damaging |
Het |
| Ube3c |
G |
A |
5: 29,851,617 (GRCm39) |
A815T |
probably benign |
Het |
| Vmn2r5 |
A |
T |
3: 64,417,116 (GRCm39) |
V14E |
probably benign |
Het |
| Zdbf2 |
A |
G |
1: 63,343,018 (GRCm39) |
T466A |
possibly damaging |
Het |
|
| Other mutations in Vmn2r79 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01401:Vmn2r79
|
APN |
7 |
86,686,481 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL01675:Vmn2r79
|
APN |
7 |
86,645,856 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL01760:Vmn2r79
|
APN |
7 |
86,651,366 (GRCm39) |
missense |
probably benign |
|
|
IGL01834:Vmn2r79
|
APN |
7 |
86,686,354 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL01843:Vmn2r79
|
APN |
7 |
86,686,485 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01914:Vmn2r79
|
APN |
7 |
86,686,571 (GRCm39) |
missense |
probably benign |
0.14 |
|
IGL01980:Vmn2r79
|
APN |
7 |
86,686,290 (GRCm39) |
missense |
possibly damaging |
0.49 |
|
IGL02438:Vmn2r79
|
APN |
7 |
86,651,744 (GRCm39) |
missense |
probably damaging |
0.98 |
|
IGL02740:Vmn2r79
|
APN |
7 |
86,653,366 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL03052:Vmn2r79
|
UTSW |
7 |
86,652,799 (GRCm39) |
missense |
probably benign |
0.00 |
|
PIT4445001:Vmn2r79
|
UTSW |
7 |
86,651,408 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
R0096:Vmn2r79
|
UTSW |
7 |
86,686,527 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0096:Vmn2r79
|
UTSW |
7 |
86,686,527 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0270:Vmn2r79
|
UTSW |
7 |
86,652,594 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0336:Vmn2r79
|
UTSW |
7 |
86,651,287 (GRCm39) |
missense |
probably benign |
0.15 |
|
R0418:Vmn2r79
|
UTSW |
7 |
86,651,611 (GRCm39) |
missense |
probably benign |
0.18 |
|
R1070:Vmn2r79
|
UTSW |
7 |
86,652,681 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1234:Vmn2r79
|
UTSW |
7 |
86,653,307 (GRCm39) |
missense |
possibly damaging |
0.71 |
|
R1459:Vmn2r79
|
UTSW |
7 |
86,687,002 (GRCm39) |
missense |
probably benign |
0.01 |
|
R1513:Vmn2r79
|
UTSW |
7 |
86,686,652 (GRCm39) |
missense |
probably benign |
0.01 |
|
R1633:Vmn2r79
|
UTSW |
7 |
86,687,042 (GRCm39) |
missense |
possibly damaging |
0.52 |
|
R1676:Vmn2r79
|
UTSW |
7 |
86,651,839 (GRCm39) |
missense |
probably benign |
|
|
R1781:Vmn2r79
|
UTSW |
7 |
86,651,555 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1794:Vmn2r79
|
UTSW |
7 |
86,650,621 (GRCm39) |
missense |
probably benign |
0.37 |
|
R1823:Vmn2r79
|
UTSW |
7 |
86,687,080 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2013:Vmn2r79
|
UTSW |
7 |
86,653,289 (GRCm39) |
missense |
possibly damaging |
0.50 |
|
R2018:Vmn2r79
|
UTSW |
7 |
86,651,634 (GRCm39) |
missense |
probably benign |
0.07 |
|
R2019:Vmn2r79
|
UTSW |
7 |
86,651,634 (GRCm39) |
missense |
probably benign |
0.07 |
|
R2177:Vmn2r79
|
UTSW |
7 |
86,645,839 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R2984:Vmn2r79
|
UTSW |
7 |
86,651,099 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R3719:Vmn2r79
|
UTSW |
7 |
86,651,245 (GRCm39) |
missense |
probably benign |
0.05 |
|
R3798:Vmn2r79
|
UTSW |
7 |
86,651,402 (GRCm39) |
missense |
possibly damaging |
0.88 |
|
R3969:Vmn2r79
|
UTSW |
7 |
86,652,801 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4182:Vmn2r79
|
UTSW |
7 |
86,651,099 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R4183:Vmn2r79
|
UTSW |
7 |
86,651,099 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R4245:Vmn2r79
|
UTSW |
7 |
86,651,624 (GRCm39) |
missense |
possibly damaging |
0.73 |
|
R4301:Vmn2r79
|
UTSW |
7 |
86,651,099 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R4391:Vmn2r79
|
UTSW |
7 |
86,651,099 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R4393:Vmn2r79
|
UTSW |
7 |
86,651,099 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R4394:Vmn2r79
|
UTSW |
7 |
86,651,099 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R4396:Vmn2r79
|
UTSW |
7 |
86,651,099 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R4397:Vmn2r79
|
UTSW |
7 |
86,651,099 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R4592:Vmn2r79
|
UTSW |
7 |
86,653,319 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R4697:Vmn2r79
|
UTSW |
7 |
86,687,168 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R4897:Vmn2r79
|
UTSW |
7 |
86,650,675 (GRCm39) |
missense |
probably benign |
|
|
R5016:Vmn2r79
|
UTSW |
7 |
86,686,548 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5058:Vmn2r79
|
UTSW |
7 |
86,651,423 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R5177:Vmn2r79
|
UTSW |
7 |
86,651,177 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R6078:Vmn2r79
|
UTSW |
7 |
86,653,319 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R6079:Vmn2r79
|
UTSW |
7 |
86,653,319 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R6138:Vmn2r79
|
UTSW |
7 |
86,653,319 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R6257:Vmn2r79
|
UTSW |
7 |
86,651,778 (GRCm39) |
missense |
probably benign |
0.27 |
|
R6260:Vmn2r79
|
UTSW |
7 |
86,686,365 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6307:Vmn2r79
|
UTSW |
7 |
86,686,976 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6323:Vmn2r79
|
UTSW |
7 |
86,650,522 (GRCm39) |
missense |
probably benign |
0.05 |
|
R6374:Vmn2r79
|
UTSW |
7 |
86,651,498 (GRCm39) |
missense |
probably benign |
0.02 |
|
R6530:Vmn2r79
|
UTSW |
7 |
86,651,252 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R6546:Vmn2r79
|
UTSW |
7 |
86,652,741 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6682:Vmn2r79
|
UTSW |
7 |
86,653,370 (GRCm39) |
missense |
possibly damaging |
0.69 |
|
R6858:Vmn2r79
|
UTSW |
7 |
86,686,580 (GRCm39) |
missense |
probably benign |
|
|
R6965:Vmn2r79
|
UTSW |
7 |
86,651,100 (GRCm39) |
missense |
probably benign |
0.10 |
|
R7130:Vmn2r79
|
UTSW |
7 |
86,651,474 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7156:Vmn2r79
|
UTSW |
7 |
86,686,851 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R7604:Vmn2r79
|
UTSW |
7 |
86,652,592 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R7691:Vmn2r79
|
UTSW |
7 |
86,687,111 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R8055:Vmn2r79
|
UTSW |
7 |
86,686,541 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R8070:Vmn2r79
|
UTSW |
7 |
86,651,336 (GRCm39) |
missense |
probably benign |
|
|
R8073:Vmn2r79
|
UTSW |
7 |
86,651,462 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8145:Vmn2r79
|
UTSW |
7 |
86,686,862 (GRCm39) |
missense |
probably benign |
0.02 |
|
R8263:Vmn2r79
|
UTSW |
7 |
86,686,726 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R8350:Vmn2r79
|
UTSW |
7 |
86,686,741 (GRCm39) |
nonsense |
probably null |
|
|
R8400:Vmn2r79
|
UTSW |
7 |
86,651,308 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8814:Vmn2r79
|
UTSW |
7 |
86,651,714 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8862:Vmn2r79
|
UTSW |
7 |
86,645,712 (GRCm39) |
missense |
probably benign |
0.23 |
|
R9146:Vmn2r79
|
UTSW |
7 |
86,650,681 (GRCm39) |
nonsense |
probably null |
|
|
R9276:Vmn2r79
|
UTSW |
7 |
86,687,045 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9361:Vmn2r79
|
UTSW |
7 |
86,652,822 (GRCm39) |
critical splice donor site |
probably null |
|
|
R9676:Vmn2r79
|
UTSW |
7 |
86,686,452 (GRCm39) |
missense |
probably damaging |
1.00 |
|
U15987:Vmn2r79
|
UTSW |
7 |
86,653,319 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
X0054:Vmn2r79
|
UTSW |
7 |
86,653,270 (GRCm39) |
missense |
probably benign |
0.01 |
|
Z1088:Vmn2r79
|
UTSW |
7 |
86,651,549 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1176:Vmn2r79
|
UTSW |
7 |
86,686,377 (GRCm39) |
missense |
probably benign |
|
|
Z1176:Vmn2r79
|
UTSW |
7 |
86,651,526 (GRCm39) |
missense |
probably benign |
0.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- AGAGTGGGCTACAGATATCAAACAGGTAA -3'
(R):5'- GACGAGACAGGGAGTTTAATACATCATATCAG -3'
Sequencing Primer
(F):5'- ctctctctctctctctctctctg -3'
(R):5'- CCTCACCTGTCATGTTGGAA -3'
|
| Posted On |
2014-04-24 |
Incidental Mutation