Mutagenetix > Incidental Mutation

Incidental Mutation 'R1565:Vmn2r27'

175194

Institutional Source

Beutler Lab

Gene Symbol

Vmn2r27

Ensembl Gene

ENSMUSG00000072778

Gene Name

vomeronasal 2, receptor27

Synonyms

EG232367

MMRRC Submission

039604-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.077) question?

Stock #

R1565 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

124191596-124231784 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 124231634 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glycine to Serine at position 51 (G51S)

Ref Sequence

ENSEMBL: ENSMUSP00000098528 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000100968]

AlphaFold

D3YUK6

Predicted Effect

probably benign
Transcript: ENSMUST00000100968
AA Change: G51S

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000098528
Gene: ENSMUSG00000072778
AA Change: G51S

Domain	Start	End	E-Value	Type
signal peptide	1	22	N/A	INTRINSIC
Pfam:ANF_receptor	81	475	1.1e-27	PFAM
Pfam:NCD3G	519	570	1.3e-18	PFAM
Pfam:7tm_3	603	838	2.6e-50	PFAM

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.0%
3x: 98.1%
10x: 95.5%
20x: 90.0%

Validation Efficiency

96% (82/85)

Allele List at MGI

Other mutations in this stock

Total: 74 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2810021J22Rik	G	A	11: 58,880,501	G270S	probably benign	Het
Abtb1	T	C	6: 88,836,554	T401A	probably benign	Het
Adamts14	A	T	10: 61,270,897	M148K	probably damaging	Het
Adcy5	A	G	16: 35,268,957	E508G	probably damaging	Het
Ankfy1	T	A	11: 72,757,318	L875H	probably damaging	Het
Cacng3	A	T	7: 122,768,401	D168V	probably damaging	Het
Clpb	G	A	7: 101,785,461	R488Q	probably benign	Het
Cpxm2	A	T	7: 132,062,145	Y350N	probably damaging	Het
D130040H23Rik	T	A	8: 69,303,160	*406R	probably null	Het
Dnah10	T	A	5: 124,829,614	D4236E	probably damaging	Het
Dpf3	T	A	12: 83,370,617	Y27F	probably damaging	Het
Esp4	T	C	17: 40,602,595	*118Q	probably null	Het
Fam222b	T	C	11: 78,154,662	S222P	possibly damaging	Het
Flnc	T	C	6: 29,455,171	V1933A	probably damaging	Het
Gem	T	C	4: 11,713,709	F282L	possibly damaging	Het
Gli2	T	C	1: 118,841,930	T631A	possibly damaging	Het
Gm13088	G	A	4: 143,655,617	Q170*	probably null	Het
Gpld1	T	A	13: 24,956,068	V116E	probably damaging	Het
Gpr176	A	G	2: 118,280,214	M188T	probably benign	Het
Grk5	T	C	19: 61,089,972	V489A	probably damaging	Het
H2-Ke6	C	T	17: 34,027,495	V105I	possibly damaging	Het
Hpdl	T	C	4: 116,820,883	N127S	probably damaging	Het
Id4	G	T	13: 48,262,294	V151L	possibly damaging	Het
Kcnh8	G	T	17: 52,956,881	G802V	probably benign	Het
Lamc1	C	A	1: 153,242,743	S894I	probably benign	Het
Larp1b	A	G	3: 40,972,384	N184S	probably damaging	Het
Lhx1	A	T	11: 84,519,821	S226T	probably benign	Het
Lmo7	A	T	14: 101,887,521	Q472L	probably damaging	Het
Mog	G	C	17: 37,017,582	N152K	possibly damaging	Het
Mttp	A	G	3: 138,116,405		probably null	Het
Mycbp2	A	G	14: 103,252,509	V953A	possibly damaging	Het
Myo3a	A	T	2: 22,340,280	Y509F	probably damaging	Het
Myo9b	A	G	8: 71,315,192	N303S	possibly damaging	Het
Nek3	T	C	8: 22,132,201		probably null	Het
Nlrc4	A	T	17: 74,441,931	D771E	probably benign	Het
Nup160	A	T	2: 90,722,061	N1127I	possibly damaging	Het
Oas1h	A	T	5: 120,862,600	N91I	probably damaging	Het
Olfr1225	A	T	2: 89,170,627	V195D	probably benign	Het
Olfr1226	G	T	2: 89,193,883	S50R	probably damaging	Het
Olfr1342	T	A	4: 118,690,192	N87Y	probably damaging	Het
Parp4	T	C	14: 56,589,872		probably benign	Het
Pi4ka	G	A	16: 17,281,900	C96Y	probably null	Het
Pira2	A	T	7: 3,844,549	F47Y	probably damaging	Het
Pkhd1	C	A	1: 20,347,457	G2490V	probably damaging	Het
Plekhg1	C	T	10: 3,940,526	T394I	probably damaging	Het
Psmd1	T	C	1: 86,091,997		probably benign	Het
Rab3ip	A	T	10: 116,939,223	C77S	probably benign	Het
Reln	A	T	5: 21,925,213	M2700K	probably benign	Het
Rfx1	A	G	8: 84,073,946	T59A	probably benign	Het
Ric8b	G	T	10: 84,980,099	V405L	probably benign	Het
Rufy3	G	T	5: 88,640,632	A479S	probably damaging	Het
Sardh	A	T	2: 27,242,719	Y166N	probably damaging	Het
Slamf6	T	G	1: 171,934,408	V132G	possibly damaging	Het
Slc12a3	T	G	8: 94,345,877	H674Q	possibly damaging	Het
Sned1	G	A	1: 93,281,654	V830M	possibly damaging	Het
Srsf9	A	G	5: 115,327,370	N21S	possibly damaging	Het
Stkld1	A	T	2: 26,950,090	T391S	probably benign	Het
Sumf2	C	A	5: 129,859,914	N230K	probably damaging	Het
Tbc1d22a	T	C	15: 86,235,569	V22A	possibly damaging	Het
Thsd7b	T	A	1: 129,596,041	S194T	possibly damaging	Het
Tmem27	A	G	X: 164,118,234	D184G	possibly damaging	Het
Tnn	T	A	1: 160,097,265	Y1173F	probably damaging	Het
Top2a	A	G	11: 99,001,054	F1122L	probably damaging	Het
Trappc9	G	A	15: 73,025,967	R377W	probably damaging	Het
Trim39	G	A	17: 36,268,854	R70W	probably damaging	Het
Ttn	G	A	2: 76,794,261	T15289I	probably damaging	Het
Ugt2b38	A	T	5: 87,411,914	V373E	probably damaging	Het
Usp54	A	G	14: 20,607,159	S24P	probably damaging	Het
Xylt2	C	T	11: 94,667,594	A579T	probably benign	Het
Zbtb21	A	G	16: 97,952,427	S247P	probably benign	Het
Zc3h7b	C	T	15: 81,777,088	P376L	probably benign	Het
Zfp251	T	A	15: 76,853,038	R613S	probably damaging	Het
Zfp251	C	T	15: 76,853,039	R613K	possibly damaging	Het
Zfp91	T	C	19: 12,779,075	D135G	probably benign	Het

Other mutations in Vmn2r27

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01285:Vmn2r27	APN	6	124192411	missense	possibly damaging	0.86
IGL01388:Vmn2r27	APN	6	124223832	missense	possibly damaging	0.55
IGL01923:Vmn2r27	APN	6	124200525	missense	probably benign	0.20
IGL01954:Vmn2r27	APN	6	124192248	missense	probably damaging	1.00
IGL02105:Vmn2r27	APN	6	124197349	splice site	probably benign
IGL02586:Vmn2r27	APN	6	124224475	nonsense	probably null
IGL03130:Vmn2r27	APN	6	124192317	missense	possibly damaging	0.82
IGL03330:Vmn2r27	APN	6	124230180	nonsense	probably null
R0124:Vmn2r27	UTSW	6	124231619	missense	probably benign
R0234:Vmn2r27	UTSW	6	124231619	missense	probably benign
R0234:Vmn2r27	UTSW	6	124231619	missense	probably benign
R0384:Vmn2r27	UTSW	6	124223912	missense	probably benign	0.01
R0582:Vmn2r27	UTSW	6	124224290	missense	probably benign	0.02
R0733:Vmn2r27	UTSW	6	124192188	missense	probably benign	0.18
R0738:Vmn2r27	UTSW	6	124223702	missense	possibly damaging	0.48
R0835:Vmn2r27	UTSW	6	124200624	missense	probably damaging	0.99
R1183:Vmn2r27	UTSW	6	124200532	missense	probably benign
R1401:Vmn2r27	UTSW	6	124191632	nonsense	probably null
R1484:Vmn2r27	UTSW	6	124200515	missense	probably damaging	0.96
R1536:Vmn2r27	UTSW	6	124200690	missense	probably damaging	1.00
R1539:Vmn2r27	UTSW	6	124191771	missense	probably damaging	1.00
R1595:Vmn2r27	UTSW	6	124231615	missense	probably benign	0.00
R1614:Vmn2r27	UTSW	6	124223934	missense	probably benign	0.01
R1742:Vmn2r27	UTSW	6	124200677	missense	possibly damaging	0.48
R1816:Vmn2r27	UTSW	6	124230371	nonsense	probably null
R1822:Vmn2r27	UTSW	6	124231634	missense	probably benign
R1824:Vmn2r27	UTSW	6	124231634	missense	probably benign
R1870:Vmn2r27	UTSW	6	124224211	missense	probably benign	0.11
R1942:Vmn2r27	UTSW	6	124223763	missense	probably damaging	1.00
R1962:Vmn2r27	UTSW	6	124223834	missense	possibly damaging	0.70
R2069:Vmn2r27	UTSW	6	124224483	missense	probably damaging	1.00
R2075:Vmn2r27	UTSW	6	124200551	missense	possibly damaging	0.85
R2379:Vmn2r27	UTSW	6	124224383	missense	possibly damaging	0.89
R3748:Vmn2r27	UTSW	6	124230392	missense	probably benign	0.35
R4384:Vmn2r27	UTSW	6	124224156	missense	probably benign	0.05
R4392:Vmn2r27	UTSW	6	124230176	missense	probably benign	0.01
R4758:Vmn2r27	UTSW	6	124231637	missense	possibly damaging	0.87
R5018:Vmn2r27	UTSW	6	124224182	missense	probably benign	0.02
R5235:Vmn2r27	UTSW	6	124192054	missense	probably damaging	0.99
R5718:Vmn2r27	UTSW	6	124192144	missense	possibly damaging	0.66
R5859:Vmn2r27	UTSW	6	124200688	missense	probably damaging	1.00
R5958:Vmn2r27	UTSW	6	124231727	missense	probably benign	0.00
R6044:Vmn2r27	UTSW	6	124231772	missense	probably benign
R6086:Vmn2r27	UTSW	6	124191999	missense	probably damaging	1.00
R6396:Vmn2r27	UTSW	6	124224166	nonsense	probably null
R6546:Vmn2r27	UTSW	6	124192410	missense	possibly damaging	0.49
R6746:Vmn2r27	UTSW	6	124200593	missense	possibly damaging	0.47
R6976:Vmn2r27	UTSW	6	124224353	nonsense	probably null
R7091:Vmn2r27	UTSW	6	124223945	missense	possibly damaging	0.85
R7145:Vmn2r27	UTSW	6	124191752	missense	probably benign
R7176:Vmn2r27	UTSW	6	124192036	missense	probably benign	0.01
R7382:Vmn2r27	UTSW	6	124197317	missense	probably damaging	1.00
R7482:Vmn2r27	UTSW	6	124224261	missense	probably damaging	1.00
R7853:Vmn2r27	UTSW	6	124192021	missense	probably damaging	1.00
R7859:Vmn2r27	UTSW	6	124224242	missense	probably benign	0.00
R7959:Vmn2r27	UTSW	6	124192081	missense	probably benign
R8266:Vmn2r27	UTSW	6	124191978	missense	probably benign	0.00
R8353:Vmn2r27	UTSW	6	124192445	missense	probably damaging	0.99
R8394:Vmn2r27	UTSW	6	124191817	missense	possibly damaging	0.71
R8463:Vmn2r27	UTSW	6	124192209	missense	probably damaging	1.00
R8477:Vmn2r27	UTSW	6	124224241	missense	probably benign	0.11
R8705:Vmn2r27	UTSW	6	124230229	missense	probably damaging	1.00
R8752:Vmn2r27	UTSW	6	124224059	missense	probably benign	0.00
R9109:Vmn2r27	UTSW	6	124197265	missense	possibly damaging	0.95
R9140:Vmn2r27	UTSW	6	124192248	missense	probably damaging	1.00
R9157:Vmn2r27	UTSW	6	124224285	missense	probably benign	0.09
R9431:Vmn2r27	UTSW	6	124191897	missense	probably damaging	1.00
R9477:Vmn2r27	UTSW	6	124191951	missense	probably damaging	0.99
R9758:Vmn2r27	UTSW	6	124191678	missense	possibly damaging	0.89
Z1177:Vmn2r27	UTSW	6	124191901	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GACCCCATAAAGTTGAAGGCAGGATAC -3'
(R):5'- GCAACTCTGTGAAGGGGACACAATC -3'

Sequencing Primer
(F):5'- GTTGAAGGCAGGATACATTGG -3'
(R):5'- CAAATTATACTCCCTGGAACTGAGG -3'

Posted On

2014-04-24