Mutagenetix > Incidental Mutation

Incidental Mutation 'R1565:Clpb'

175196

Institutional Source

Beutler Lab

Gene Symbol

Clpb

Ensembl Gene

ENSMUSG00000001829

Gene Name

ClpB caseinolytic peptidase B

Synonyms

Skd3

MMRRC Submission

039604-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.891) question?

Stock #

R1565 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

101663633-101795506 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 101785461 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Glutamine at position 488 (R488Q)

Ref Sequence

ENSEMBL: ENSMUSP00000148062 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000001884] [ENSMUST00000106998] [ENSMUST00000209579]

AlphaFold

Q60649

Predicted Effect

probably benign
Transcript: ENSMUST00000001884
AA Change: R488Q

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000001884
Gene: ENSMUSG00000001829
AA Change: R488Q

Domain	Start	End	E-Value	Type
ANK	133	162	2.03e-1	SMART
ANK	166	195	1.96e-3	SMART
ANK	235	264	6.65e-6	SMART
low complexity region	294	306	N/A	INTRINSIC
AAA	343	497	6.36e-10	SMART
ClpB_D2-small	541	630	6.83e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000106998
AA Change: R518Q

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000102611
Gene: ENSMUSG00000001829
AA Change: R518Q

Domain	Start	End	E-Value	Type
ANK	133	162	2.03e-1	SMART
ANK	166	195	1.96e-3	SMART
ANK	265	294	6.65e-6	SMART
low complexity region	324	336	N/A	INTRINSIC
AAA	373	527	6.36e-10	SMART
ClpB_D2-small	571	660	6.83e-4	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150355

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150832

Predicted Effect

probably benign
Transcript: ENSMUST00000209579
AA Change: R488Q

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.0%
3x: 98.1%
10x: 95.5%
20x: 90.0%

Validation Efficiency

96% (82/85)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene belongs to the ATP-ases associated with diverse cellular activities (AAA+) superfamily. Members of this superfamily form ring-shaped homo-hexamers and have highly conserved ATPase domains that are involved in various processes including DNA replication, protein degradation and reactivation of misfolded proteins. All members of this family hydrolyze ATP through their AAA+ domains and use the energy generated through ATP hydrolysis to exert mechanical force on their substrates. In addition to an AAA+ domain, the protein encoded by this gene contains a C-terminal D2 domain, which is characteristic of the AAA+ subfamily of Caseinolytic peptidases to which this protein belongs. It cooperates with Hsp70 in the disaggregation of protein aggregates. Allelic variants of this gene are associated with 3-methylglutaconic aciduria, which causes cataracts and neutropenia. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2015]

Allele List at MGI

Other mutations in this stock

Total: 74 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2810021J22Rik	G	A	11: 58,880,501 (GRCm38)	G270S	probably benign	Het
Abtb1	T	C	6: 88,836,554 (GRCm38)	T401A	probably benign	Het
Adamts14	A	T	10: 61,270,897 (GRCm38)	M148K	probably damaging	Het
Adcy5	A	G	16: 35,268,957 (GRCm38)	E508G	probably damaging	Het
Ankfy1	T	A	11: 72,757,318 (GRCm38)	L875H	probably damaging	Het
Cacng3	A	T	7: 122,768,401 (GRCm38)	D168V	probably damaging	Het
Cpxm2	A	T	7: 132,062,145 (GRCm38)	Y350N	probably damaging	Het
D130040H23Rik	T	A	8: 69,303,160 (GRCm38)	*406R	probably null	Het
Dnah10	T	A	5: 124,829,614 (GRCm38)	D4236E	probably damaging	Het
Dpf3	T	A	12: 83,370,617 (GRCm38)	Y27F	probably damaging	Het
Esp4	T	C	17: 40,602,595 (GRCm38)	*118Q	probably null	Het
Fam222b	T	C	11: 78,154,662 (GRCm38)	S222P	possibly damaging	Het
Flnc	T	C	6: 29,455,171 (GRCm38)	V1933A	probably damaging	Het
Gem	T	C	4: 11,713,709 (GRCm38)	F282L	possibly damaging	Het
Gli2	T	C	1: 118,841,930 (GRCm38)	T631A	possibly damaging	Het
Gm13088	G	A	4: 143,655,617 (GRCm38)	Q170*	probably null	Het
Gpld1	T	A	13: 24,956,068 (GRCm38)	V116E	probably damaging	Het
Gpr176	A	G	2: 118,280,214 (GRCm38)	M188T	probably benign	Het
Grk5	T	C	19: 61,089,972 (GRCm38)	V489A	probably damaging	Het
H2-Ke6	C	T	17: 34,027,495 (GRCm38)	V105I	possibly damaging	Het
Hpdl	T	C	4: 116,820,883 (GRCm38)	N127S	probably damaging	Het
Id4	G	T	13: 48,262,294 (GRCm38)	V151L	possibly damaging	Het
Kcnh8	G	T	17: 52,956,881 (GRCm38)	G802V	probably benign	Het
Lamc1	C	A	1: 153,242,743 (GRCm38)	S894I	probably benign	Het
Larp1b	A	G	3: 40,972,384 (GRCm38)	N184S	probably damaging	Het
Lhx1	A	T	11: 84,519,821 (GRCm38)	S226T	probably benign	Het
Lmo7	A	T	14: 101,887,521 (GRCm38)	Q472L	probably damaging	Het
Mog	G	C	17: 37,017,582 (GRCm38)	N152K	possibly damaging	Het
Mttp	A	G	3: 138,116,405 (GRCm38)		probably null	Het
Mycbp2	A	G	14: 103,252,509 (GRCm38)	V953A	possibly damaging	Het
Myo3a	A	T	2: 22,340,280 (GRCm38)	Y509F	probably damaging	Het
Myo9b	A	G	8: 71,315,192 (GRCm38)	N303S	possibly damaging	Het
Nek3	T	C	8: 22,132,201 (GRCm38)		probably null	Het
Nlrc4	A	T	17: 74,441,931 (GRCm38)	D771E	probably benign	Het
Nup160	A	T	2: 90,722,061 (GRCm38)	N1127I	possibly damaging	Het
Oas1h	A	T	5: 120,862,600 (GRCm38)	N91I	probably damaging	Het
Olfr1225	A	T	2: 89,170,627 (GRCm38)	V195D	probably benign	Het
Olfr1226	G	T	2: 89,193,883 (GRCm38)	S50R	probably damaging	Het
Olfr1342	T	A	4: 118,690,192 (GRCm38)	N87Y	probably damaging	Het
Parp4	T	C	14: 56,589,872 (GRCm38)		probably benign	Het
Pi4ka	G	A	16: 17,281,900 (GRCm38)	C96Y	probably null	Het
Pira2	A	T	7: 3,844,549 (GRCm38)	F47Y	probably damaging	Het
Pkhd1	C	A	1: 20,347,457 (GRCm38)	G2490V	probably damaging	Het
Plekhg1	C	T	10: 3,940,526 (GRCm38)	T394I	probably damaging	Het
Psmd1	T	C	1: 86,091,997 (GRCm38)		probably benign	Het
Rab3ip	A	T	10: 116,939,223 (GRCm38)	C77S	probably benign	Het
Reln	A	T	5: 21,925,213 (GRCm38)	M2700K	probably benign	Het
Rfx1	A	G	8: 84,073,946 (GRCm38)	T59A	probably benign	Het
Ric8b	G	T	10: 84,980,099 (GRCm38)	V405L	probably benign	Het
Rufy3	G	T	5: 88,640,632 (GRCm38)	A479S	probably damaging	Het
Sardh	A	T	2: 27,242,719 (GRCm38)	Y166N	probably damaging	Het
Slamf6	T	G	1: 171,934,408 (GRCm38)	V132G	possibly damaging	Het
Slc12a3	T	G	8: 94,345,877 (GRCm38)	H674Q	possibly damaging	Het
Sned1	G	A	1: 93,281,654 (GRCm38)	V830M	possibly damaging	Het
Srsf9	A	G	5: 115,327,370 (GRCm38)	N21S	possibly damaging	Het
Stkld1	A	T	2: 26,950,090 (GRCm38)	T391S	probably benign	Het
Sumf2	C	A	5: 129,859,914 (GRCm38)	N230K	probably damaging	Het
Tbc1d22a	T	C	15: 86,235,569 (GRCm38)	V22A	possibly damaging	Het
Thsd7b	T	A	1: 129,596,041 (GRCm38)	S194T	possibly damaging	Het
Tmem27	A	G	X: 164,118,234 (GRCm38)	D184G	possibly damaging	Het
Tnn	T	A	1: 160,097,265 (GRCm38)	Y1173F	probably damaging	Het
Top2a	A	G	11: 99,001,054 (GRCm38)	F1122L	probably damaging	Het
Trappc9	G	A	15: 73,025,967 (GRCm38)	R377W	probably damaging	Het
Trim39	G	A	17: 36,268,854 (GRCm38)	R70W	probably damaging	Het
Ttn	G	A	2: 76,794,261 (GRCm38)	T15289I	probably damaging	Het
Ugt2b38	A	T	5: 87,411,914 (GRCm38)	V373E	probably damaging	Het
Usp54	A	G	14: 20,607,159 (GRCm38)	S24P	probably damaging	Het
Vmn2r27	C	T	6: 124,231,634 (GRCm38)	G51S	probably benign	Het
Xylt2	C	T	11: 94,667,594 (GRCm38)	A579T	probably benign	Het
Zbtb21	A	G	16: 97,952,427 (GRCm38)	S247P	probably benign	Het
Zc3h7b	C	T	15: 81,777,088 (GRCm38)	P376L	probably benign	Het
Zfp251	C	T	15: 76,853,039 (GRCm38)	R613K	possibly damaging	Het
Zfp251	T	A	15: 76,853,038 (GRCm38)	R613S	probably damaging	Het
Zfp91	T	C	19: 12,779,075 (GRCm38)	D135G	probably benign	Het

Other mutations in Clpb

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00418:Clpb	APN	7	101,787,745 (GRCm38)	missense	probably benign
IGL00778:Clpb	APN	7	101,778,608 (GRCm38)	nonsense	probably null
IGL00780:Clpb	APN	7	101,778,608 (GRCm38)	nonsense	probably null
IGL00951:Clpb	APN	7	101,751,260 (GRCm38)	missense	probably benign	0.00
IGL01374:Clpb	APN	7	101,773,128 (GRCm38)	missense	probably damaging	1.00
IGL01542:Clpb	APN	7	101,787,505 (GRCm38)	missense	probably damaging	0.98
IGL02203:Clpb	APN	7	101,779,337 (GRCm38)	missense	probably damaging	1.00
IGL02989:Clpb	APN	7	101,779,220 (GRCm38)	missense	probably damaging	1.00
IGL03088:Clpb	APN	7	101,785,449 (GRCm38)	nonsense	probably null
Surfeit	UTSW	7	101,711,465 (GRCm38)	missense	probably damaging	1.00
PIT1430001:Clpb	UTSW	7	101,786,719 (GRCm38)	missense	possibly damaging	0.95
PIT4486001:Clpb	UTSW	7	101,663,932 (GRCm38)	missense	probably benign	0.17
R0611:Clpb	UTSW	7	101,787,749 (GRCm38)	missense	possibly damaging	0.71
R1760:Clpb	UTSW	7	101,786,698 (GRCm38)	missense	possibly damaging	0.92
R1879:Clpb	UTSW	7	101,706,483 (GRCm38)	missense	probably benign	0.23
R1933:Clpb	UTSW	7	101,779,211 (GRCm38)	missense	probably damaging	0.96
R1938:Clpb	UTSW	7	101,763,656 (GRCm38)	missense	probably damaging	1.00
R2922:Clpb	UTSW	7	101,722,828 (GRCm38)	missense	probably benign	0.02
R2923:Clpb	UTSW	7	101,722,828 (GRCm38)	missense	probably benign	0.02
R2995:Clpb	UTSW	7	101,779,324 (GRCm38)	missense	probably damaging	1.00
R4492:Clpb	UTSW	7	101,787,722 (GRCm38)	missense	probably damaging	1.00
R5384:Clpb	UTSW	7	101,779,341 (GRCm38)	missense	probably damaging	1.00
R5973:Clpb	UTSW	7	101,663,997 (GRCm38)	missense	probably benign	0.02
R6787:Clpb	UTSW	7	101,663,659 (GRCm38)	unclassified	probably benign
R7158:Clpb	UTSW	7	101,663,832 (GRCm38)	missense	probably benign	0.45
R7225:Clpb	UTSW	7	101,711,465 (GRCm38)	missense	probably damaging	1.00
R7239:Clpb	UTSW	7	101,711,455 (GRCm38)	missense	probably damaging	0.96
R7482:Clpb	UTSW	7	101,786,719 (GRCm38)	missense	possibly damaging	0.95
R7499:Clpb	UTSW	7	101,722,728 (GRCm38)	missense	possibly damaging	0.92
R7547:Clpb	UTSW	7	101,664,296 (GRCm38)	splice site	probably null
R7769:Clpb	UTSW	7	101,722,717 (GRCm38)	missense	probably damaging	0.96
R8279:Clpb	UTSW	7	101,706,488 (GRCm38)	missense	possibly damaging	0.79
R9376:Clpb	UTSW	7	101,711,418 (GRCm38)	missense	probably benign	0.01
R9501:Clpb	UTSW	7	101,778,573 (GRCm38)	missense	probably damaging	1.00
R9623:Clpb	UTSW	7	101,664,192 (GRCm38)	missense	possibly damaging	0.72
R9631:Clpb	UTSW	7	101,785,398 (GRCm38)	missense	possibly damaging	0.85

Predicted Primers

PCR Primer
(F):5'- ATTGTTAGGACGTGAGTCCCATGC -3'
(R):5'- GTTTCCGAAGCCCTCCTGTAAACC -3'

Sequencing Primer
(F):5'- CCATGCCCAGAGAGCTTAGAG -3'
(R):5'- GCCCTCCTGTAAACCAGTAG -3'

Posted On

2014-04-24