Incidental Mutation 'R1591:Caprin2'
ID 175488
Institutional Source Beutler Lab
Gene Symbol Caprin2
Ensembl Gene ENSMUSG00000030309
Gene Name caprin family member 2
Synonyms RNG140, C1qdc1, Eeg1
MMRRC Submission 039628-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R1591 (G1)
Quality Score 225
Status Validated
Chromosome 6
Chromosomal Location 148743990-148797735 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 148774606 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Serine to Arginine at position 235 (S235R)
Ref Sequence ENSEMBL: ENSMUSP00000107195 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000072324] [ENSMUST00000111569] [ENSMUST00000139914]
AlphaFold Q05A80
Predicted Effect possibly damaging
Transcript: ENSMUST00000072324
AA Change: S235R

PolyPhen 2 Score 0.941 (Sensitivity: 0.80; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000072165
Gene: ENSMUSG00000030309
AA Change: S235R

DomainStartEndE-ValueType
coiled coil region 48 125 N/A INTRINSIC
coiled coil region 239 264 N/A INTRINSIC
Pfam:Caprin-1_C 317 618 1.2e-32 PFAM
C1Q 676 812 1.27e-35 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000111569
AA Change: S235R

PolyPhen 2 Score 0.941 (Sensitivity: 0.80; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000107195
Gene: ENSMUSG00000030309
AA Change: S235R

DomainStartEndE-ValueType
coiled coil region 48 125 N/A INTRINSIC
coiled coil region 239 264 N/A INTRINSIC
low complexity region 330 344 N/A INTRINSIC
Pfam:Caprin-1_C 536 836 2.9e-106 PFAM
C1Q 895 1031 1.27e-35 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000139914
SMART Domains Protein: ENSMUSP00000121685
Gene: ENSMUSG00000030309

DomainStartEndE-ValueType
coiled coil region 48 94 N/A INTRINSIC
Meta Mutation Damage Score 0.1977 question?
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.1%
  • 10x: 95.5%
  • 20x: 89.7%
Validation Efficiency 100% (80/80)
MGI Phenotype FUNCTION: This gene encodes a member of the caprin family. The encoded protein may function as an RNA-binding protein that induces the formation of RNA granules and plays an important role in brain function. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2014]
Allele List at MGI
Other mutations in this stock
Total: 75 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abraxas1 G T 5: 100,957,505 (GRCm39) Q201K probably benign Het
Acacb A T 5: 114,341,484 (GRCm39) I829F possibly damaging Het
Acvr1b G T 15: 101,091,905 (GRCm39) V62L probably benign Het
Adam6b A T 12: 113,453,452 (GRCm39) I90F probably benign Het
Adgrf1 T C 17: 43,621,872 (GRCm39) L703P probably damaging Het
Arf3 T C 15: 98,640,669 (GRCm39) probably benign Het
Asns T C 6: 7,678,007 (GRCm39) D357G probably damaging Het
Atr T C 9: 95,827,438 (GRCm39) M2461T probably damaging Het
B3galt4 G A 17: 34,169,813 (GRCm39) R142C probably damaging Het
Bod1l T C 5: 41,976,563 (GRCm39) I1584V probably benign Het
Bub3 T C 7: 131,163,337 (GRCm39) probably null Het
Camkk2 A G 5: 122,895,621 (GRCm39) probably null Het
Cand1 G T 10: 119,047,774 (GRCm39) T572K possibly damaging Het
Cdh24 T C 14: 54,873,799 (GRCm39) T452A probably benign Het
Cdh4 T C 2: 179,528,657 (GRCm39) probably null Het
Cfap61 A G 2: 145,987,378 (GRCm39) R1060G probably benign Het
Chd9 A G 8: 91,710,166 (GRCm39) D314G probably damaging Het
Cplx3 C T 9: 57,523,085 (GRCm39) V125I probably benign Het
Csmd1 T A 8: 15,950,710 (GRCm39) I3500F probably damaging Het
Dnah1 G T 14: 30,994,289 (GRCm39) Q2858K probably benign Het
Dnah6 C T 6: 73,053,583 (GRCm39) E2884K probably benign Het
Ecm1 G A 3: 95,643,275 (GRCm39) R342C probably damaging Het
Exosc10 T A 4: 148,652,840 (GRCm39) I485N probably benign Het
Fap T C 2: 62,384,201 (GRCm39) K2E probably damaging Het
Fgfr1 G A 8: 26,062,736 (GRCm39) G671D probably damaging Het
Fzr1 C T 10: 81,206,201 (GRCm39) R162Q possibly damaging Het
Grap2 A T 15: 80,532,649 (GRCm39) Y272F probably damaging Het
Il11ra1 T A 4: 41,766,200 (GRCm39) W246R probably damaging Het
Kcna3 A T 3: 106,944,345 (GRCm39) I203F probably damaging Het
Kcng1 T C 2: 168,110,630 (GRCm39) E178G possibly damaging Het
Kif19a A C 11: 114,680,057 (GRCm39) H798P probably benign Het
Kif21b T C 1: 136,077,055 (GRCm39) L359P probably damaging Het
Krt6a A T 15: 101,600,792 (GRCm39) probably null Het
Lrp1 C T 10: 127,441,475 (GRCm39) S216N probably benign Het
Lrp3 A G 7: 34,901,790 (GRCm39) V676A probably benign Het
Lrrc63 T A 14: 75,363,332 (GRCm39) K266N possibly damaging Het
Mccc1 C T 3: 36,044,006 (GRCm39) V246M probably damaging Het
Mdn1 T C 4: 32,700,092 (GRCm39) V1395A possibly damaging Het
Mmrn1 A T 6: 60,921,755 (GRCm39) R71* probably null Het
Mrps2 C T 2: 28,359,500 (GRCm39) A119V probably benign Het
Ogdh T C 11: 6,299,384 (GRCm39) F750S probably damaging Het
Or1ak2 C A 2: 36,827,990 (GRCm39) N286K probably damaging Het
Or51aa2 T G 7: 103,188,274 (GRCm39) T56P probably benign Het
Or5p60 T A 7: 107,723,571 (GRCm39) I300F possibly damaging Het
Or8b3 A G 9: 38,314,232 (GRCm39) T18A probably damaging Het
Or8b42 A T 9: 38,341,707 (GRCm39) N43I probably damaging Het
Osbpl11 A C 16: 33,030,353 (GRCm39) I194L probably benign Het
Pacsin2 T C 15: 83,269,252 (GRCm39) E14G probably damaging Het
Pate7 T C 9: 35,687,952 (GRCm39) D96G probably damaging Het
Pcdh7 A G 5: 57,877,764 (GRCm39) T440A probably damaging Het
Pcdhb17 T C 18: 37,618,878 (GRCm39) S223P probably damaging Het
Pik3c2g G A 6: 139,693,904 (GRCm39) R109K probably benign Het
Ppp2ca T C 11: 51,989,916 (GRCm39) I14T possibly damaging Het
Rdh12 A T 12: 79,258,278 (GRCm39) T102S probably damaging Het
Rsf1 T A 7: 97,288,520 (GRCm39) C132* probably null Het
Rufy1 G A 11: 50,285,755 (GRCm39) L621F probably damaging Het
Ruvbl2 C T 7: 45,074,135 (GRCm39) R253H possibly damaging Het
Sdf2 A G 11: 78,145,819 (GRCm39) E172G probably damaging Het
Skint5 C T 4: 113,856,651 (GRCm39) probably null Het
Slc25a27 A G 17: 43,964,315 (GRCm39) I185T probably benign Het
Slc41a3 A C 6: 90,610,677 (GRCm39) K180Q probably benign Het
Slc7a14 A C 3: 31,291,598 (GRCm39) F227V probably damaging Het
Smg1 T C 7: 117,756,142 (GRCm39) probably benign Het
St6galnac1 A T 11: 116,656,689 (GRCm39) D483E probably damaging Het
Tes A G 6: 17,097,441 (GRCm39) K183R probably damaging Het
Tgfbr1 G T 4: 47,403,471 (GRCm39) D290Y probably damaging Het
Tifab T A 13: 56,324,164 (GRCm39) Y93F probably benign Het
Tmem131l A G 3: 83,848,196 (GRCm39) probably null Het
Tnfrsf21 T A 17: 43,396,265 (GRCm39) S516R probably benign Het
Ttn T C 2: 76,606,389 (GRCm39) Y18140C probably damaging Het
Unc13b T A 4: 43,244,747 (GRCm39) S3692T probably damaging Het
Vwa8 C T 14: 79,145,670 (GRCm39) R116C probably damaging Het
Zfp113 T C 5: 138,149,459 (GRCm39) probably benign Het
Zfp26 T C 9: 20,348,921 (GRCm39) T548A probably benign Het
Zfp870 C T 17: 33,102,990 (GRCm39) G114D probably damaging Het
Other mutations in Caprin2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00236:Caprin2 APN 6 148,744,569 (GRCm39) missense probably damaging 1.00
IGL01364:Caprin2 APN 6 148,774,526 (GRCm39) missense probably benign 0.00
IGL02738:Caprin2 APN 6 148,744,360 (GRCm39) missense probably damaging 1.00
IGL02819:Caprin2 APN 6 148,749,756 (GRCm39) missense probably damaging 0.99
IGL03117:Caprin2 APN 6 148,763,964 (GRCm39) missense possibly damaging 0.91
IGL03123:Caprin2 APN 6 148,796,505 (GRCm39) missense probably damaging 1.00
IGL03378:Caprin2 APN 6 148,779,352 (GRCm39) missense probably benign 0.23
R0242:Caprin2 UTSW 6 148,744,452 (GRCm39) missense probably damaging 1.00
R0242:Caprin2 UTSW 6 148,744,452 (GRCm39) missense probably damaging 1.00
R0621:Caprin2 UTSW 6 148,760,176 (GRCm39) missense possibly damaging 0.94
R0930:Caprin2 UTSW 6 148,785,009 (GRCm39) splice site probably null
R1540:Caprin2 UTSW 6 148,777,969 (GRCm39) missense probably benign 0.01
R1763:Caprin2 UTSW 6 148,744,619 (GRCm39) missense probably damaging 1.00
R1885:Caprin2 UTSW 6 148,779,383 (GRCm39) splice site probably null
R2027:Caprin2 UTSW 6 148,779,385 (GRCm39) missense probably damaging 0.98
R2867:Caprin2 UTSW 6 148,747,738 (GRCm39) synonymous silent
R4856:Caprin2 UTSW 6 148,774,509 (GRCm39) missense probably benign 0.19
R5580:Caprin2 UTSW 6 148,760,232 (GRCm39) missense possibly damaging 0.79
R5696:Caprin2 UTSW 6 148,779,316 (GRCm39) missense possibly damaging 0.49
R5765:Caprin2 UTSW 6 148,744,666 (GRCm39) missense probably damaging 1.00
R5778:Caprin2 UTSW 6 148,770,820 (GRCm39) missense probably benign
R5961:Caprin2 UTSW 6 148,765,038 (GRCm39) missense probably damaging 1.00
R6255:Caprin2 UTSW 6 148,779,390 (GRCm39) missense probably benign 0.28
R6440:Caprin2 UTSW 6 148,771,143 (GRCm39) missense probably damaging 1.00
R6997:Caprin2 UTSW 6 148,779,474 (GRCm39) missense probably damaging 1.00
R7034:Caprin2 UTSW 6 148,749,703 (GRCm39) missense possibly damaging 0.64
R7344:Caprin2 UTSW 6 148,774,565 (GRCm39) missense probably benign 0.02
R7632:Caprin2 UTSW 6 148,784,954 (GRCm39) missense probably damaging 1.00
R7808:Caprin2 UTSW 6 148,744,528 (GRCm39) missense probably damaging 1.00
R8075:Caprin2 UTSW 6 148,770,590 (GRCm39) missense probably benign 0.03
R8083:Caprin2 UTSW 6 148,744,346 (GRCm39) nonsense probably null
R8128:Caprin2 UTSW 6 148,784,940 (GRCm39) splice site probably null
R8393:Caprin2 UTSW 6 148,770,650 (GRCm39) missense probably benign 0.01
R8839:Caprin2 UTSW 6 148,774,525 (GRCm39) missense probably benign 0.00
R9041:Caprin2 UTSW 6 148,771,030 (GRCm39) missense probably benign 0.03
R9188:Caprin2 UTSW 6 148,767,422 (GRCm39) missense probably benign
R9234:Caprin2 UTSW 6 148,744,337 (GRCm39) nonsense probably null
R9587:Caprin2 UTSW 6 148,770,500 (GRCm39) missense probably benign
R9605:Caprin2 UTSW 6 148,744,332 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- CTGAGAGCTAAATCCCCAAACACTCATT -3'
(R):5'- GTATAGACAATTCCAGGTGTCAACCCC -3'

Sequencing Primer
(F):5'- cttccaagttcaaaaccagcc -3'
(R):5'- GGCCAATAAGTTGTCAACCC -3'
Posted On 2014-04-24