Incidental Mutation 'R1591:Cdh24'
ID 175521
Institutional Source Beutler Lab
Gene Symbol Cdh24
Ensembl Gene ENSMUSG00000059674
Gene Name cadherin-like 24
Synonyms EY-cadherin, ENSMUSG00000022188, cadherin 14-like, 1700040A22Rik
MMRRC Submission 039628-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.202) question?
Stock # R1591 (G1)
Quality Score 225
Status Validated
Chromosome 14
Chromosomal Location 54868688-54878821 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 54873799 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Alanine at position 452 (T452A)
Ref Sequence ENSEMBL: ENSMUSP00000066005 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000067784] [ENSMUST00000169818] [ENSMUST00000227124]
AlphaFold Q6PFX6
Predicted Effect probably benign
Transcript: ENSMUST00000067784
AA Change: T452A

PolyPhen 2 Score 0.193 (Sensitivity: 0.92; Specificity: 0.87)
SMART Domains Protein: ENSMUSP00000066005
Gene: ENSMUSG00000059674
AA Change: T452A

DomainStartEndE-ValueType
signal peptide 1 22 N/A INTRINSIC
CA 67 148 7.85e-18 SMART
CA 172 257 3.23e-28 SMART
CA 281 369 4.24e-14 SMART
CA 396 477 1.48e-22 SMART
Blast:CA 500 581 3e-31 BLAST
transmembrane domain 602 624 N/A INTRINSIC
Pfam:Cadherin_C 627 775 2e-48 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000169818
SMART Domains Protein: ENSMUSP00000131860
Gene: ENSMUSG00000091306

DomainStartEndE-ValueType
low complexity region 1 61 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000227124
Meta Mutation Damage Score 0.1030 question?
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.1%
  • 10x: 95.5%
  • 20x: 89.7%
Validation Efficiency 100% (80/80)
Allele List at MGI
Other mutations in this stock
Total: 75 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abraxas1 G T 5: 100,957,505 (GRCm39) Q201K probably benign Het
Acacb A T 5: 114,341,484 (GRCm39) I829F possibly damaging Het
Acvr1b G T 15: 101,091,905 (GRCm39) V62L probably benign Het
Adam6b A T 12: 113,453,452 (GRCm39) I90F probably benign Het
Adgrf1 T C 17: 43,621,872 (GRCm39) L703P probably damaging Het
Arf3 T C 15: 98,640,669 (GRCm39) probably benign Het
Asns T C 6: 7,678,007 (GRCm39) D357G probably damaging Het
Atr T C 9: 95,827,438 (GRCm39) M2461T probably damaging Het
B3galt4 G A 17: 34,169,813 (GRCm39) R142C probably damaging Het
Bod1l T C 5: 41,976,563 (GRCm39) I1584V probably benign Het
Bub3 T C 7: 131,163,337 (GRCm39) probably null Het
Camkk2 A G 5: 122,895,621 (GRCm39) probably null Het
Cand1 G T 10: 119,047,774 (GRCm39) T572K possibly damaging Het
Caprin2 A T 6: 148,774,606 (GRCm39) S235R possibly damaging Het
Cdh4 T C 2: 179,528,657 (GRCm39) probably null Het
Cfap61 A G 2: 145,987,378 (GRCm39) R1060G probably benign Het
Chd9 A G 8: 91,710,166 (GRCm39) D314G probably damaging Het
Cplx3 C T 9: 57,523,085 (GRCm39) V125I probably benign Het
Csmd1 T A 8: 15,950,710 (GRCm39) I3500F probably damaging Het
Dnah1 G T 14: 30,994,289 (GRCm39) Q2858K probably benign Het
Dnah6 C T 6: 73,053,583 (GRCm39) E2884K probably benign Het
Ecm1 G A 3: 95,643,275 (GRCm39) R342C probably damaging Het
Exosc10 T A 4: 148,652,840 (GRCm39) I485N probably benign Het
Fap T C 2: 62,384,201 (GRCm39) K2E probably damaging Het
Fgfr1 G A 8: 26,062,736 (GRCm39) G671D probably damaging Het
Fzr1 C T 10: 81,206,201 (GRCm39) R162Q possibly damaging Het
Grap2 A T 15: 80,532,649 (GRCm39) Y272F probably damaging Het
Il11ra1 T A 4: 41,766,200 (GRCm39) W246R probably damaging Het
Kcna3 A T 3: 106,944,345 (GRCm39) I203F probably damaging Het
Kcng1 T C 2: 168,110,630 (GRCm39) E178G possibly damaging Het
Kif19a A C 11: 114,680,057 (GRCm39) H798P probably benign Het
Kif21b T C 1: 136,077,055 (GRCm39) L359P probably damaging Het
Krt6a A T 15: 101,600,792 (GRCm39) probably null Het
Lrp1 C T 10: 127,441,475 (GRCm39) S216N probably benign Het
Lrp3 A G 7: 34,901,790 (GRCm39) V676A probably benign Het
Lrrc63 T A 14: 75,363,332 (GRCm39) K266N possibly damaging Het
Mccc1 C T 3: 36,044,006 (GRCm39) V246M probably damaging Het
Mdn1 T C 4: 32,700,092 (GRCm39) V1395A possibly damaging Het
Mmrn1 A T 6: 60,921,755 (GRCm39) R71* probably null Het
Mrps2 C T 2: 28,359,500 (GRCm39) A119V probably benign Het
Ogdh T C 11: 6,299,384 (GRCm39) F750S probably damaging Het
Or1ak2 C A 2: 36,827,990 (GRCm39) N286K probably damaging Het
Or51aa2 T G 7: 103,188,274 (GRCm39) T56P probably benign Het
Or5p60 T A 7: 107,723,571 (GRCm39) I300F possibly damaging Het
Or8b3 A G 9: 38,314,232 (GRCm39) T18A probably damaging Het
Or8b42 A T 9: 38,341,707 (GRCm39) N43I probably damaging Het
Osbpl11 A C 16: 33,030,353 (GRCm39) I194L probably benign Het
Pacsin2 T C 15: 83,269,252 (GRCm39) E14G probably damaging Het
Pate7 T C 9: 35,687,952 (GRCm39) D96G probably damaging Het
Pcdh7 A G 5: 57,877,764 (GRCm39) T440A probably damaging Het
Pcdhb17 T C 18: 37,618,878 (GRCm39) S223P probably damaging Het
Pik3c2g G A 6: 139,693,904 (GRCm39) R109K probably benign Het
Ppp2ca T C 11: 51,989,916 (GRCm39) I14T possibly damaging Het
Rdh12 A T 12: 79,258,278 (GRCm39) T102S probably damaging Het
Rsf1 T A 7: 97,288,520 (GRCm39) C132* probably null Het
Rufy1 G A 11: 50,285,755 (GRCm39) L621F probably damaging Het
Ruvbl2 C T 7: 45,074,135 (GRCm39) R253H possibly damaging Het
Sdf2 A G 11: 78,145,819 (GRCm39) E172G probably damaging Het
Skint5 C T 4: 113,856,651 (GRCm39) probably null Het
Slc25a27 A G 17: 43,964,315 (GRCm39) I185T probably benign Het
Slc41a3 A C 6: 90,610,677 (GRCm39) K180Q probably benign Het
Slc7a14 A C 3: 31,291,598 (GRCm39) F227V probably damaging Het
Smg1 T C 7: 117,756,142 (GRCm39) probably benign Het
St6galnac1 A T 11: 116,656,689 (GRCm39) D483E probably damaging Het
Tes A G 6: 17,097,441 (GRCm39) K183R probably damaging Het
Tgfbr1 G T 4: 47,403,471 (GRCm39) D290Y probably damaging Het
Tifab T A 13: 56,324,164 (GRCm39) Y93F probably benign Het
Tmem131l A G 3: 83,848,196 (GRCm39) probably null Het
Tnfrsf21 T A 17: 43,396,265 (GRCm39) S516R probably benign Het
Ttn T C 2: 76,606,389 (GRCm39) Y18140C probably damaging Het
Unc13b T A 4: 43,244,747 (GRCm39) S3692T probably damaging Het
Vwa8 C T 14: 79,145,670 (GRCm39) R116C probably damaging Het
Zfp113 T C 5: 138,149,459 (GRCm39) probably benign Het
Zfp26 T C 9: 20,348,921 (GRCm39) T548A probably benign Het
Zfp870 C T 17: 33,102,990 (GRCm39) G114D probably damaging Het
Other mutations in Cdh24
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01362:Cdh24 APN 14 54,875,889 (GRCm39) missense probably benign 0.01
IGL02597:Cdh24 APN 14 54,870,972 (GRCm39) missense possibly damaging 0.55
R0088:Cdh24 UTSW 14 54,871,171 (GRCm39) missense probably damaging 1.00
R0480:Cdh24 UTSW 14 54,870,054 (GRCm39) missense probably benign 0.38
R0890:Cdh24 UTSW 14 54,870,051 (GRCm39) missense probably benign 0.00
R1525:Cdh24 UTSW 14 54,876,046 (GRCm39) missense probably damaging 1.00
R1727:Cdh24 UTSW 14 54,876,095 (GRCm39) nonsense probably null
R3757:Cdh24 UTSW 14 54,869,637 (GRCm39) missense possibly damaging 0.92
R4786:Cdh24 UTSW 14 54,875,007 (GRCm39) missense possibly damaging 0.65
R4921:Cdh24 UTSW 14 54,870,672 (GRCm39) missense probably damaging 1.00
R4929:Cdh24 UTSW 14 54,870,973 (GRCm39) missense probably benign 0.00
R5116:Cdh24 UTSW 14 54,873,870 (GRCm39) missense probably benign 0.34
R5589:Cdh24 UTSW 14 54,874,832 (GRCm39) missense probably damaging 1.00
R5682:Cdh24 UTSW 14 54,874,805 (GRCm39) missense probably damaging 1.00
R5774:Cdh24 UTSW 14 54,876,514 (GRCm39) missense probably damaging 0.99
R6305:Cdh24 UTSW 14 54,869,813 (GRCm39) missense possibly damaging 0.62
R7090:Cdh24 UTSW 14 54,876,964 (GRCm39) missense probably damaging 1.00
R7186:Cdh24 UTSW 14 54,870,949 (GRCm39) missense probably benign 0.03
R7361:Cdh24 UTSW 14 54,876,378 (GRCm39) missense possibly damaging 0.74
R7488:Cdh24 UTSW 14 54,869,637 (GRCm39) missense possibly damaging 0.92
R7623:Cdh24 UTSW 14 54,875,547 (GRCm39) missense probably damaging 1.00
R7823:Cdh24 UTSW 14 54,874,875 (GRCm39) missense probably damaging 1.00
R7973:Cdh24 UTSW 14 54,876,477 (GRCm39) missense possibly damaging 0.87
R8017:Cdh24 UTSW 14 54,876,089 (GRCm39) missense probably damaging 1.00
R8019:Cdh24 UTSW 14 54,876,089 (GRCm39) missense probably damaging 1.00
R8029:Cdh24 UTSW 14 54,876,856 (GRCm39) missense probably damaging 1.00
R8070:Cdh24 UTSW 14 54,870,030 (GRCm39) missense probably benign
R8160:Cdh24 UTSW 14 54,875,946 (GRCm39) missense probably damaging 0.99
R8692:Cdh24 UTSW 14 54,875,793 (GRCm39) missense probably benign 0.29
R8862:Cdh24 UTSW 14 54,869,874 (GRCm39) missense probably damaging 1.00
R8915:Cdh24 UTSW 14 54,876,612 (GRCm39) missense probably damaging 1.00
R9161:Cdh24 UTSW 14 54,876,097 (GRCm39) missense probably damaging 1.00
R9212:Cdh24 UTSW 14 54,878,679 (GRCm39) unclassified probably benign
Predicted Primers PCR Primer
(F):5'- TGCTGACACACTCTTGCAAAGTCC -3'
(R):5'- GGCTGGTAAGGCTCTCCTCAAAAC -3'

Sequencing Primer
(F):5'- AGGCATAAGTGCCTGCTCAC -3'
(R):5'- TTTGGACACTCTAGCAAGATGAGC -3'
Posted On 2014-04-24