Incidental Mutation 'R1614:Atpaf1'
ID 176988
Institutional Source Beutler Lab
Gene Symbol Atpaf1
Ensembl Gene ENSMUSG00000028710
Gene Name ATP synthase mitochondrial F1 complex assembly factor 1
Synonyms 6330547J17Rik, ATP11, ATP11p
MMRRC Submission 039651-MU
Accession Numbers
Essential gene? Possibly essential (E-score: 0.624) question?
Stock # R1614 (G1)
Quality Score 225
Status Validated
Chromosome 4
Chromosomal Location 115642025-115669120 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 115653954 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Lysine to Asparagine at position 201 (K201N)
Ref Sequence ENSEMBL: ENSMUSP00000135831 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000137401] [ENSMUST00000175725] [ENSMUST00000176047] [ENSMUST00000176192] [ENSMUST00000177280]
AlphaFold Q811I0
Predicted Effect probably benign
Transcript: ENSMUST00000137401
SMART Domains Protein: ENSMUSP00000135490
Gene: ENSMUSG00000028710

DomainStartEndE-ValueType
Pfam:ATP11 1 60 4.6e-20 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000175725
AA Change: K60N

PolyPhen 2 Score 0.062 (Sensitivity: 0.94; Specificity: 0.84)
SMART Domains Protein: ENSMUSP00000135073
Gene: ENSMUSG00000028710
AA Change: K60N

DomainStartEndE-ValueType
Pfam:ATP11 1 189 2.5e-69 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000176047
AA Change: K201N

PolyPhen 2 Score 0.522 (Sensitivity: 0.88; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000135831
Gene: ENSMUSG00000028710
AA Change: K201N

DomainStartEndE-ValueType
low complexity region 9 39 N/A INTRINSIC
Pfam:ATP11 91 329 2.7e-50 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000176192
AA Change: K18N

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)
Predicted Effect probably benign
Transcript: ENSMUST00000177280
AA Change: K184N

PolyPhen 2 Score 0.329 (Sensitivity: 0.90; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000135214
Gene: ENSMUSG00000028710
AA Change: K184N

DomainStartEndE-ValueType
low complexity region 9 39 N/A INTRINSIC
Pfam:ATP11 89 212 7.3e-32 PFAM
Predicted Effect unknown
Transcript: ENSMUST00000184179
AA Change: K123N
Meta Mutation Damage Score 0.1795 question?
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.1%
  • 10x: 95.4%
  • 20x: 89.4%
Validation Efficiency 100% (53/53)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes an assembly factor for the F(1) component of the mitochondrial ATP synthase. This protein binds specifically to the F1 beta subunit and is thought to prevent this subunit from forming nonproductive homooligomers during enzyme assembly. Alternatively spliced transcript variants have been identified. [provided by RefSeq, Aug 2011]
Allele List at MGI
Other mutations in this stock
Total: 46 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Arl9 A G 5: 77,158,412 (GRCm39) T165A probably benign Het
Cacna1b G T 2: 24,580,819 (GRCm39) Q676K possibly damaging Het
Ccdc88c A T 12: 100,879,243 (GRCm39) H1959Q probably benign Het
Cep162 T C 9: 87,094,985 (GRCm39) D808G probably damaging Het
Chct1 T G 11: 85,063,690 (GRCm39) S28A possibly damaging Het
Chtf18 A G 17: 25,946,064 (GRCm39) L42P probably benign Het
Cox7c A G 13: 86,193,904 (GRCm39) F40L probably benign Het
Dock7 C T 4: 98,949,517 (GRCm39) V442I probably benign Het
Dst T C 1: 34,314,344 (GRCm39) F4198S probably damaging Het
Fam13a T A 6: 58,917,169 (GRCm39) D569V probably damaging Het
Gm6741 T A 17: 91,544,424 (GRCm39) H62Q probably benign Het
Gnptab A G 10: 88,250,451 (GRCm39) T172A probably benign Het
Greb1 A G 12: 16,751,172 (GRCm39) S1013P probably damaging Het
Insl5 A T 4: 102,883,846 (GRCm39) L25* probably null Het
Ipo13 A G 4: 117,761,815 (GRCm39) S462P probably benign Het
Itgb1 G A 8: 129,446,546 (GRCm39) C401Y probably damaging Het
Kcnh7 G T 2: 62,680,948 (GRCm39) A213E probably benign Het
Kcnv1 G A 15: 44,977,840 (GRCm39) T66M probably damaging Het
Mesp2 T C 7: 79,461,367 (GRCm39) S231P probably benign Het
Nabp1 T C 1: 51,510,511 (GRCm39) N164D possibly damaging Het
Nop53 A G 7: 15,679,890 (GRCm39) V30A probably benign Het
Or1j17 T G 2: 36,578,321 (GRCm39) Y102* probably null Het
Or4a73 T A 2: 89,421,040 (GRCm39) I140L possibly damaging Het
Or4f54 T A 2: 111,123,411 (GRCm39) V266E probably damaging Het
Or4f62 T A 2: 111,986,862 (GRCm39) C189S probably damaging Het
Pcsk5 G A 19: 17,492,620 (GRCm39) R918C probably damaging Het
Pecam1 T C 11: 106,571,905 (GRCm39) D554G probably benign Het
Polr2a T C 11: 69,634,199 (GRCm39) I744V possibly damaging Het
Pop1 C A 15: 34,530,356 (GRCm39) A918D possibly damaging Het
Ppp2r5e C G 12: 75,516,341 (GRCm39) A239P probably damaging Het
Prmt3 A T 7: 49,476,467 (GRCm39) I359F possibly damaging Het
Proz G A 8: 13,116,904 (GRCm39) C152Y probably damaging Het
Ptgfr A C 3: 151,507,416 (GRCm39) Y316D probably benign Het
Ralgapa2 G T 2: 146,230,532 (GRCm39) S1011Y probably damaging Het
Rnf43 C T 11: 87,622,485 (GRCm39) R529* probably null Het
Slc17a6 G A 7: 51,296,025 (GRCm39) probably benign Het
Slc25a19 A T 11: 115,507,449 (GRCm39) C224* probably null Het
Smarcd3 A G 5: 24,799,874 (GRCm39) S299P possibly damaging Het
Stard9 T C 2: 120,528,156 (GRCm39) F1471S possibly damaging Het
Strada A C 11: 106,059,145 (GRCm39) V211G probably damaging Het
Tom1l1 T C 11: 90,574,080 (GRCm39) E68G probably damaging Het
Vmn2r27 T G 6: 124,200,893 (GRCm39) I355L probably benign Het
Vmn2r68 A T 7: 84,870,946 (GRCm39) M779K possibly damaging Het
Zbtb18 T C 1: 177,274,736 (GRCm39) L23P probably damaging Het
Zfp112 G T 7: 23,826,024 (GRCm39) C664F probably damaging Het
Zfp955a A T 17: 33,461,306 (GRCm39) N275K possibly damaging Het
Other mutations in Atpaf1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02529:Atpaf1 APN 4 115,648,466 (GRCm39) missense probably damaging 1.00
IGL03122:Atpaf1 APN 4 115,648,475 (GRCm39) missense probably damaging 1.00
R0396:Atpaf1 UTSW 4 115,642,449 (GRCm39) missense possibly damaging 0.58
R0924:Atpaf1 UTSW 4 115,652,635 (GRCm39) missense probably damaging 1.00
R1462:Atpaf1 UTSW 4 115,642,150 (GRCm39) unclassified probably benign
R1637:Atpaf1 UTSW 4 115,645,499 (GRCm39) missense probably benign 0.00
R2180:Atpaf1 UTSW 4 115,645,557 (GRCm39) start codon destroyed probably null 0.03
R4290:Atpaf1 UTSW 4 115,645,556 (GRCm39) missense probably benign 0.02
R4293:Atpaf1 UTSW 4 115,645,556 (GRCm39) missense probably benign 0.02
R7291:Atpaf1 UTSW 4 115,668,288 (GRCm39) missense probably damaging 1.00
R7423:Atpaf1 UTSW 4 115,647,827 (GRCm39) missense probably damaging 1.00
R8876:Atpaf1 UTSW 4 115,645,548 (GRCm39) missense possibly damaging 0.51
Predicted Primers PCR Primer
(F):5'- ACTCTGTAGCAATGAGCAGCAAAGC -3'
(R):5'- ACACTGGGTTCTATGGTGCCTTTTC -3'

Sequencing Primer
(F):5'- gttcaaatcccagcaaccac -3'
(R):5'- GGTGCCTTTTCATACATATACTGAC -3'
Posted On 2014-04-24