Mutagenetix > Incidental Mutation

Incidental Mutation 'R1584:Scara3'

177378

Institutional Source

Beutler Lab

Gene Symbol

Scara3

Ensembl Gene

ENSMUSG00000034463

Gene Name

scavenger receptor class A, member 3

Synonyms

C130058N24Rik

MMRRC Submission

039621-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.117) question?

Stock #

R1584 (G1)

Quality Score

176

Status

Validated

Chromosome

Chromosomal Location

66156843-66191384 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 66158553 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 485 (D485G)

Ref Sequence

ENSEMBL: ENSMUSP00000046525 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000042046]

AlphaFold

Q8C850

Predicted Effect

probably damaging
Transcript: ENSMUST00000042046
AA Change: D485G

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000046525
Gene: ENSMUSG00000034463
AA Change: D485G

Domain	Start	End	E-Value	Type
transmembrane domain	55	77	N/A	INTRINSIC
coiled coil region	117	155	N/A	INTRINSIC
low complexity region	300	311	N/A	INTRINSIC
Pfam:Collagen	455	513	3.1e-12	PFAM
Pfam:Collagen	499	558	4.2e-11	PFAM
Pfam:Collagen	544	606	2.9e-12	PFAM

Meta Mutation Damage Score

0.2787

Coding Region Coverage

1x: 99.0%
3x: 98.1%
10x: 95.6%
20x: 90.2%

Validation Efficiency

99% (106/107)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a macrophage scavenger receptor-like protein. This protein has been shown to deplete reactive oxygen species, and thus play an important role in protecting cells from oxidative stress. The expression of this gene is induced by oxidative stress. Alternatively spliced transcript variants encoding distinct isoforms have been described. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 93 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abhd15	C	T	11: 77,406,236 (GRCm39)	A71V	probably damaging	Het
Ager	A	G	17: 34,819,692 (GRCm39)	E357G	probably damaging	Het
Akap13	T	C	7: 75,378,797 (GRCm39)	S2095P	possibly damaging	Het
Ampd2	T	C	3: 107,987,653 (GRCm39)		probably null	Het
Arrdc1	T	C	2: 24,815,807 (GRCm39)	I398V	probably benign	Het
Ash1l	T	C	3: 88,959,372 (GRCm39)	Y2250H	probably damaging	Het
Brca2	G	A	5: 150,475,723 (GRCm39)	A2478T	probably damaging	Het
Btrc	T	A	19: 45,501,821 (GRCm39)		probably benign	Het
C8g	C	T	2: 25,390,228 (GRCm39)	A6T	probably benign	Het
Ccdc121rt3	C	T	5: 112,502,630 (GRCm39)	G358D	probably benign	Het
Cdc123	T	A	2: 5,808,788 (GRCm39)		probably null	Het
Cilp	G	A	9: 65,186,997 (GRCm39)	G1031S	probably damaging	Het
Cldn5	G	A	16: 18,596,227 (GRCm39)	G161D	probably damaging	Het
Cndp2	G	A	18: 84,695,440 (GRCm39)		probably benign	Het
Cntnap1	C	A	11: 101,071,186 (GRCm39)	F366L	probably damaging	Het
Corin	C	T	5: 72,460,133 (GRCm39)		probably null	Het
Ctdspl2	G	A	2: 121,834,410 (GRCm39)	R332K	probably benign	Het
Dido1	G	A	2: 180,304,121 (GRCm39)	P1261L	probably damaging	Het
Dop1a	A	T	9: 86,430,225 (GRCm39)	R2200*	probably null	Het
Dtx3l	G	A	16: 35,753,098 (GRCm39)	L503F	probably damaging	Het
Dysf	A	G	6: 84,044,029 (GRCm39)	K259R	probably benign	Het
Enpep	T	A	3: 129,113,097 (GRCm39)	T203S	probably damaging	Het
Epha2	T	A	4: 141,049,358 (GRCm39)		probably null	Het
Fam20b	T	C	1: 156,513,758 (GRCm39)		probably benign	Het
Fbln7	A	G	2: 128,719,349 (GRCm39)	T49A	probably benign	Het
Fgf14	T	A	14: 124,913,951 (GRCm39)	K60M	probably benign	Het
Fhad1	T	C	4: 141,712,822 (GRCm39)	I206V	probably benign	Het
Figla	A	G	6: 85,997,764 (GRCm39)	E164G	probably benign	Het
Gimap4	C	A	6: 48,668,216 (GRCm39)	Q196K	probably benign	Het
Glcci1	C	T	6: 8,537,964 (GRCm39)	T6I	probably damaging	Het
Grk4	T	C	5: 34,852,094 (GRCm39)	S113P	probably benign	Het
Hectd3	G	A	4: 116,853,763 (GRCm39)	E220K	probably damaging	Het
Hecw1	A	G	13: 14,515,328 (GRCm39)		probably null	Het
Helz2	G	A	2: 180,878,090 (GRCm39)	P903S	probably damaging	Het
Hydin	T	C	8: 111,307,447 (GRCm39)	V3942A	probably benign	Het
Irs1	G	T	1: 82,267,165 (GRCm39)	H350Q	probably benign	Het
Kdm1b	G	A	13: 47,217,530 (GRCm39)	E46K	probably damaging	Het
Klf11	A	G	12: 24,705,304 (GRCm39)	N253D	probably damaging	Het
Klhl23	T	C	2: 69,664,232 (GRCm39)	I527T	probably damaging	Het
Lars1	G	A	18: 42,343,115 (GRCm39)	R1101C	probably damaging	Het
Lcn4	G	A	2: 26,558,588 (GRCm39)	P166L	probably damaging	Het
Letmd1	T	A	15: 100,370,423 (GRCm39)		probably null	Het
Lilra6	T	A	7: 3,915,661 (GRCm39)	D358V	probably damaging	Het
Mmrn2	A	G	14: 34,097,642 (GRCm39)	D24G	probably benign	Het
Mroh2b	G	T	15: 4,955,166 (GRCm39)	D720Y	probably damaging	Het
Mrps35	C	T	6: 146,957,482 (GRCm39)	T169M	probably damaging	Het
Muc4	G	A	16: 32,574,886 (GRCm39)	G1157D	probably benign	Het
Naga	T	A	15: 82,218,989 (GRCm39)	M237L	probably null	Het
Nfu1	G	A	6: 86,997,791 (GRCm39)	E225K	probably damaging	Het
Nin	A	T	12: 70,089,443 (GRCm39)	L1324Q	probably benign	Het
Oc90	T	A	15: 65,769,569 (GRCm39)	Y96F	probably damaging	Het
Or4a80	C	T	2: 89,582,611 (GRCm39)	C187Y	probably damaging	Het
Or5b116	T	C	19: 13,423,023 (GRCm39)	Y216H	probably damaging	Het
Or5m11b	T	A	2: 85,806,339 (GRCm39)	F251I	probably damaging	Het
Or6ae1	A	G	7: 139,742,116 (GRCm39)	V249A	probably damaging	Het
Or8c9	G	A	9: 38,241,427 (GRCm39)	M181I	possibly damaging	Het
Orc4	A	T	2: 48,799,506 (GRCm39)	C324S	possibly damaging	Het
Pals1	A	G	12: 78,876,501 (GRCm39)	I482V	probably benign	Het
Pdzrn4	T	C	15: 92,668,418 (GRCm39)	S857P	probably benign	Het
Plec	C	T	15: 76,070,108 (GRCm39)	E1000K	possibly damaging	Het
Plvap	A	T	8: 71,961,125 (GRCm39)	V149D	probably benign	Het
Pm20d2	A	T	4: 33,174,772 (GRCm39)	N371K	probably damaging	Het
Ppp2r5d	A	G	17: 46,995,610 (GRCm39)	Y480H	probably benign	Het
Prkd1	A	T	12: 50,472,298 (GRCm39)	V205E	probably damaging	Het
R3hdm2	A	G	10: 127,312,559 (GRCm39)	I434V	probably benign	Het
Rel	T	A	11: 23,695,546 (GRCm39)	T246S	probably damaging	Het
Rnf215	T	A	11: 4,086,719 (GRCm39)	V172E	probably damaging	Het
Sec16a	A	T	2: 26,321,169 (GRCm39)	Y1308N	probably damaging	Het
Sis	A	T	3: 72,839,393 (GRCm39)	D824E	possibly damaging	Het
Slc27a4	T	A	2: 29,701,202 (GRCm39)	V331E	probably damaging	Het
Srebf1	C	T	11: 60,091,528 (GRCm39)	R999H	probably benign	Het
St3gal3	A	C	4: 117,964,859 (GRCm39)	M1R	probably null	Het
Tapbp	C	T	17: 34,138,914 (GRCm39)		probably null	Het
Tep1	A	T	14: 51,103,494 (GRCm39)	N265K	probably damaging	Het
Thoc2l	T	A	5: 104,666,123 (GRCm39)	I215N	probably damaging	Het
Tln2	T	A	9: 67,203,696 (GRCm39)	N470I	probably damaging	Het
Trim43a	G	T	9: 88,470,211 (GRCm39)	W339L	probably damaging	Het
Ttc22	T	C	4: 106,479,977 (GRCm39)	F77S	probably damaging	Het
Ttc8	A	G	12: 98,887,023 (GRCm39)	E32G	probably benign	Het
Uhmk1	A	T	1: 170,036,222 (GRCm39)		probably null	Het
Usp17lc	A	G	7: 103,068,148 (GRCm39)	H481R	possibly damaging	Het
Vamp8	G	A	6: 72,362,617 (GRCm39)	T35M	probably damaging	Het
Vill	A	G	9: 118,894,654 (GRCm39)	Y53C	probably damaging	Het
Vmn1r222	A	T	13: 23,416,932 (GRCm39)	S94T	probably damaging	Het
Vmn2r93	A	G	17: 18,525,413 (GRCm39)	Y357C	possibly damaging	Het
Vps13c	T	A	9: 67,800,394 (GRCm39)	V536D	possibly damaging	Het
Vrtn	G	A	12: 84,696,855 (GRCm39)	C535Y	probably damaging	Het
Vwa3a	A	G	7: 120,367,388 (GRCm39)	Y181C	probably damaging	Het
Wfikkn2	G	A	11: 94,129,721 (GRCm39)	T140I	probably damaging	Het
Ykt6	T	A	11: 5,912,349 (GRCm39)	F101I	probably damaging	Het
Zfp277	C	T	12: 40,428,825 (GRCm39)	G174D	probably benign	Het
Zfp638	A	G	6: 83,955,047 (GRCm39)		probably null	Het
Zzef1	C	T	11: 72,815,505 (GRCm39)	P2942S	probably damaging	Het

Other mutations in Scara3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00229:Scara3	APN	14	66,170,570 (GRCm39)	missense	probably benign	0.01
IGL00646:Scara3	APN	14	66,158,605 (GRCm39)	nonsense	probably null
IGL00718:Scara3	APN	14	66,168,876 (GRCm39)	missense	possibly damaging	0.67
IGL01948:Scara3	APN	14	66,168,261 (GRCm39)	missense	probably damaging	0.99
IGL01979:Scara3	APN	14	66,168,412 (GRCm39)	missense	probably benign	0.01
IGL02399:Scara3	APN	14	66,170,559 (GRCm39)	nonsense	probably null
IGL02939:Scara3	APN	14	66,169,105 (GRCm39)	missense	probably benign	0.00
IGL02945:Scara3	APN	14	66,168,660 (GRCm39)	missense	probably damaging	1.00
IGL03075:Scara3	APN	14	66,168,603 (GRCm39)	missense	probably damaging	1.00
IGL03100:Scara3	APN	14	66,168,722 (GRCm39)	missense	probably damaging	1.00
IGL03156:Scara3	APN	14	66,168,603 (GRCm39)	missense	probably damaging	1.00
IGL03179:Scara3	APN	14	66,168,603 (GRCm39)	missense	probably damaging	1.00
condor	UTSW	14	66,168,651 (GRCm39)	missense	probably damaging	1.00
PIT4362001:Scara3	UTSW	14	66,173,851 (GRCm39)	missense	probably benign
R0062:Scara3	UTSW	14	66,168,417 (GRCm39)	missense	probably damaging	1.00
R0062:Scara3	UTSW	14	66,168,417 (GRCm39)	missense	probably damaging	1.00
R0124:Scara3	UTSW	14	66,168,670 (GRCm39)	missense	probably benign	0.01
R0349:Scara3	UTSW	14	66,169,230 (GRCm39)	missense	probably damaging	0.98
R4785:Scara3	UTSW	14	66,190,950 (GRCm39)	start codon destroyed	probably null	0.06
R5336:Scara3	UTSW	14	66,168,487 (GRCm39)	missense	probably damaging	1.00
R6307:Scara3	UTSW	14	66,175,710 (GRCm39)	missense	probably benign	0.24
R6420:Scara3	UTSW	14	66,175,701 (GRCm39)	missense	possibly damaging	0.92
R6610:Scara3	UTSW	14	66,168,670 (GRCm39)	missense	probably damaging	0.97
R7159:Scara3	UTSW	14	66,158,229 (GRCm39)	missense	probably damaging	0.98
R7208:Scara3	UTSW	14	66,168,715 (GRCm39)	missense	possibly damaging	0.62
R7246:Scara3	UTSW	14	66,169,093 (GRCm39)	missense	probably damaging	0.97
R7315:Scara3	UTSW	14	66,168,889 (GRCm39)	missense	probably damaging	1.00
R7324:Scara3	UTSW	14	66,168,865 (GRCm39)	missense	probably benign	0.03
R7497:Scara3	UTSW	14	66,168,651 (GRCm39)	missense	probably damaging	1.00
R7504:Scara3	UTSW	14	66,168,780 (GRCm39)	missense	possibly damaging	0.82
R7554:Scara3	UTSW	14	66,158,299 (GRCm39)	missense	possibly damaging	0.69
R8143:Scara3	UTSW	14	66,169,269 (GRCm39)	missense	probably damaging	0.96
R9043:Scara3	UTSW	14	66,169,070 (GRCm39)	missense	probably damaging	1.00
R9226:Scara3	UTSW	14	66,169,233 (GRCm39)	missense	possibly damaging	0.69
R9363:Scara3	UTSW	14	66,168,720 (GRCm39)	missense	probably benign	0.01
R9730:Scara3	UTSW	14	66,168,261 (GRCm39)	missense	probably damaging	0.99
YA93:Scara3	UTSW	14	66,168,398 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- ATGGCAGCATCAGGCCAAAGAC -3'
(R):5'- TGTGCCCACTCTGCATACAGAAAG -3'

Sequencing Primer
(F):5'- CCAAAGACTTTTTTCAGTAGGGGC -3'
(R):5'- CACTCTGCATACAGAAAGTCTTG -3'

Posted On

2014-04-24