Incidental Mutation 'R1584:Letmd1'
ID 177385
Institutional Source Beutler Lab
Gene Symbol Letmd1
Ensembl Gene ENSMUSG00000037353
Gene Name LETM1 domain containing 1
Synonyms HCCR1, 1110019O13Rik, HCCR-2
MMRRC Submission 039621-MU
Accession Numbers

Ncbi RefSeq: NM_134093.2; MGI:1915864

Essential gene? Probably non essential (E-score: 0.124) question?
Stock # R1584 (G1)
Quality Score 225
Status Validated
Chromosome 15
Chromosomal Location 100469023-100479164 bp(+) (GRCm38)
Type of Mutation splice site
DNA Base Change (assembly) T to A at 100472542 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000155807 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000037001] [ENSMUST00000229012] [ENSMUST00000229648] [ENSMUST00000230294]
AlphaFold Q924L1
Predicted Effect probably null
Transcript: ENSMUST00000037001
SMART Domains Protein: ENSMUSP00000037546
Gene: ENSMUSG00000037353

DomainStartEndE-ValueType
Pfam:LETM1 78 346 1.5e-72 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000180953
Predicted Effect probably benign
Transcript: ENSMUST00000229012
Predicted Effect noncoding transcript
Transcript: ENSMUST00000229372
Predicted Effect noncoding transcript
Transcript: ENSMUST00000229457
Predicted Effect noncoding transcript
Transcript: ENSMUST00000229596
Predicted Effect probably null
Transcript: ENSMUST00000229648
Predicted Effect probably null
Transcript: ENSMUST00000230294
Predicted Effect noncoding transcript
Transcript: ENSMUST00000230339
Predicted Effect noncoding transcript
Transcript: ENSMUST00000230579
Predicted Effect noncoding transcript
Transcript: ENSMUST00000231001
Meta Mutation Damage Score 0.9755 question?
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.1%
  • 10x: 95.6%
  • 20x: 90.2%
Validation Efficiency 99% (106/107)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a mitochondrial outer membrane protein. It has a potential role in tumorigenesis, which may result from negative regulation of the p53 tumor suppressor gene. Alternatively spliced transcript variants have been noted for this gene. [provided by RefSeq, Aug 2011]
Allele List at MGI

All alleles(7) : Targeted(2) Gene trapped(5)

Other mutations in this stock
Total: 93 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abhd15 C T 11: 77,515,410 (GRCm38) A71V probably damaging Het
Ager A G 17: 34,600,718 (GRCm38) E357G probably damaging Het
Akap13 T C 7: 75,729,049 (GRCm38) S2095P possibly damaging Het
Ampd2 T C 3: 108,080,337 (GRCm38) probably null Het
Arrdc1 T C 2: 24,925,795 (GRCm38) I398V probably benign Het
Ash1l T C 3: 89,052,065 (GRCm38) Y2250H probably damaging Het
BC005561 T A 5: 104,518,257 (GRCm38) I215N probably damaging Het
Brca2 G A 5: 150,552,258 (GRCm38) A2478T probably damaging Het
Btrc T A 19: 45,513,382 (GRCm38) probably benign Het
C8g C T 2: 25,500,216 (GRCm38) A6T probably benign Het
Cdc123 T A 2: 5,803,977 (GRCm38) probably null Het
Cilp G A 9: 65,279,715 (GRCm38) G1031S probably damaging Het
Cldn5 G A 16: 18,777,477 (GRCm38) G161D probably damaging Het
Cndp2 G A 18: 84,677,315 (GRCm38) probably benign Het
Cntnap1 C A 11: 101,180,360 (GRCm38) F366L probably damaging Het
Corin C T 5: 72,302,790 (GRCm38) probably null Het
Ctdspl2 G A 2: 122,003,929 (GRCm38) R332K probably benign Het
Dido1 G A 2: 180,662,328 (GRCm38) P1261L probably damaging Het
Dopey1 A T 9: 86,548,172 (GRCm38) R2200* probably null Het
Dtx3l G A 16: 35,932,728 (GRCm38) L503F probably damaging Het
Dysf A G 6: 84,067,047 (GRCm38) K259R probably benign Het
Enpep T A 3: 129,319,448 (GRCm38) T203S probably damaging Het
Epha2 T A 4: 141,322,047 (GRCm38) probably null Het
Fam20b T C 1: 156,686,188 (GRCm38) probably benign Het
Fbln7 A G 2: 128,877,429 (GRCm38) T49A probably benign Het
Fgf14 T A 14: 124,676,539 (GRCm38) K60M probably benign Het
Fhad1 T C 4: 141,985,511 (GRCm38) I206V probably benign Het
Figla A G 6: 86,020,782 (GRCm38) E164G probably benign Het
Gimap4 C A 6: 48,691,282 (GRCm38) Q196K probably benign Het
Glcci1 C T 6: 8,537,964 (GRCm38) T6I probably damaging Het
Gm6583 C T 5: 112,354,764 (GRCm38) G358D probably benign Het
Grk4 T C 5: 34,694,750 (GRCm38) S113P probably benign Het
Hectd3 G A 4: 116,996,566 (GRCm38) E220K probably damaging Het
Hecw1 A G 13: 14,340,743 (GRCm38) probably null Het
Helz2 G A 2: 181,236,297 (GRCm38) P903S probably damaging Het
Hydin T C 8: 110,580,815 (GRCm38) V3942A probably benign Het
Irs1 G T 1: 82,289,444 (GRCm38) H350Q probably benign Het
Kdm1b G A 13: 47,064,054 (GRCm38) E46K probably damaging Het
Klf11 A G 12: 24,655,305 (GRCm38) N253D probably damaging Het
Klhl23 T C 2: 69,833,888 (GRCm38) I527T probably damaging Het
Lars G A 18: 42,210,050 (GRCm38) R1101C probably damaging Het
Lcn4 G A 2: 26,668,576 (GRCm38) P166L probably damaging Het
Lilra6 T A 7: 3,912,662 (GRCm38) D358V probably damaging Het
Mmrn2 A G 14: 34,375,685 (GRCm38) D24G probably benign Het
Mpp5 A G 12: 78,829,727 (GRCm38) I482V probably benign Het
Mroh2b G T 15: 4,925,684 (GRCm38) D720Y probably damaging Het
Mrps35 C T 6: 147,055,984 (GRCm38) T169M probably damaging Het
Muc4 G A 16: 32,753,595 (GRCm38) G1157D probably benign Het
Naga T A 15: 82,334,788 (GRCm38) M237L probably null Het
Nfu1 G A 6: 87,020,809 (GRCm38) E225K probably damaging Het
Nin A T 12: 70,042,669 (GRCm38) L1324Q probably benign Het
Oc90 T A 15: 65,897,720 (GRCm38) Y96F probably damaging Het
Olfr1029 T A 2: 85,975,995 (GRCm38) F251I probably damaging Het
Olfr1253 C T 2: 89,752,267 (GRCm38) C187Y probably damaging Het
Olfr1471 T C 19: 13,445,659 (GRCm38) Y216H probably damaging Het
Olfr25 G A 9: 38,330,131 (GRCm38) M181I possibly damaging Het
Olfr522 A G 7: 140,162,203 (GRCm38) V249A probably damaging Het
Orc4 A T 2: 48,909,494 (GRCm38) C324S possibly damaging Het
Pdzrn4 T C 15: 92,770,537 (GRCm38) S857P probably benign Het
Plec C T 15: 76,185,908 (GRCm38) E1000K possibly damaging Het
Plvap A T 8: 71,508,481 (GRCm38) V149D probably benign Het
Pm20d2 A T 4: 33,174,772 (GRCm38) N371K probably damaging Het
Ppp2r5d A G 17: 46,684,684 (GRCm38) Y480H probably benign Het
Prkd1 A T 12: 50,425,515 (GRCm38) V205E probably damaging Het
R3hdm2 A G 10: 127,476,690 (GRCm38) I434V probably benign Het
Rel T A 11: 23,745,546 (GRCm38) T246S probably damaging Het
Rnf215 T A 11: 4,136,719 (GRCm38) V172E probably damaging Het
Scara3 T C 14: 65,921,104 (GRCm38) D485G probably damaging Het
Sec16a A T 2: 26,431,157 (GRCm38) Y1308N probably damaging Het
Sis A T 3: 72,932,060 (GRCm38) D824E possibly damaging Het
Slc27a4 T A 2: 29,811,190 (GRCm38) V331E probably damaging Het
Srebf1 C T 11: 60,200,702 (GRCm38) R999H probably benign Het
St3gal3 A C 4: 118,107,662 (GRCm38) M1R probably null Het
Tapbp C T 17: 33,919,940 (GRCm38) probably null Het
Tep1 A T 14: 50,866,037 (GRCm38) N265K probably damaging Het
Tln2 T A 9: 67,296,414 (GRCm38) N470I probably damaging Het
Trim43a G T 9: 88,588,158 (GRCm38) W339L probably damaging Het
Ttc22 T C 4: 106,622,780 (GRCm38) F77S probably damaging Het
Ttc8 A G 12: 98,920,764 (GRCm38) E32G probably benign Het
Uhmk1 A T 1: 170,208,653 (GRCm38) probably null Het
Usp17lc A G 7: 103,418,941 (GRCm38) H481R possibly damaging Het
Vamp8 G A 6: 72,385,634 (GRCm38) T35M probably damaging Het
Vill A G 9: 119,065,586 (GRCm38) Y53C probably damaging Het
Vmn1r222 A T 13: 23,232,762 (GRCm38) S94T probably damaging Het
Vmn2r93 A G 17: 18,305,151 (GRCm38) Y357C possibly damaging Het
Vps13c T A 9: 67,893,112 (GRCm38) V536D possibly damaging Het
Vrtn G A 12: 84,650,081 (GRCm38) C535Y probably damaging Het
Vwa3a A G 7: 120,768,165 (GRCm38) Y181C probably damaging Het
Wfikkn2 G A 11: 94,238,895 (GRCm38) T140I probably damaging Het
Ykt6 T A 11: 5,962,349 (GRCm38) F101I probably damaging Het
Zfp277 C T 12: 40,378,826 (GRCm38) G174D probably benign Het
Zfp638 A G 6: 83,978,065 (GRCm38) probably null Het
Zzef1 C T 11: 72,924,679 (GRCm38) P2942S probably damaging Het
Other mutations in Letmd1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01020:Letmd1 APN 15 100,471,759 (GRCm38) missense probably damaging 1.00
IGL02210:Letmd1 APN 15 100,469,247 (GRCm38) critical splice donor site probably null
IGL02486:Letmd1 APN 15 100,475,111 (GRCm38) missense probably damaging 1.00
IGL02606:Letmd1 APN 15 100,475,091 (GRCm38) missense probably damaging 1.00
IGL03218:Letmd1 APN 15 100,469,828 (GRCm38) missense probably damaging 1.00
lass UTSW 15 100,472,542 (GRCm38) splice site probably null
P0031:Letmd1 UTSW 15 100,472,609 (GRCm38) missense probably damaging 1.00
PIT4515001:Letmd1 UTSW 15 100,476,802 (GRCm38) missense probably damaging 1.00
R0737:Letmd1 UTSW 15 100,469,821 (GRCm38) missense probably damaging 1.00
R1466:Letmd1 UTSW 15 100,472,542 (GRCm38) splice site probably null
R1466:Letmd1 UTSW 15 100,472,542 (GRCm38) splice site probably null
R4457:Letmd1 UTSW 15 100,475,130 (GRCm38) missense possibly damaging 0.54
R4641:Letmd1 UTSW 15 100,477,827 (GRCm38) missense probably damaging 1.00
R4724:Letmd1 UTSW 15 100,469,738 (GRCm38) missense probably damaging 1.00
R5463:Letmd1 UTSW 15 100,469,128 (GRCm38) missense probably damaging 1.00
R7407:Letmd1 UTSW 15 100,469,238 (GRCm38) missense probably benign 0.08
R8852:Letmd1 UTSW 15 100,475,366 (GRCm38) missense probably benign 0.01
Y5407:Letmd1 UTSW 15 100,475,409 (GRCm38) critical splice donor site probably null
Predicted Primers PCR Primer
(F):5'- AGTCGGCATGGCCCTTttttcttt -3'
(R):5'- gcactgggactacaCCAGACAAAAT -3'

Sequencing Primer
(F):5'- cttgaactcagaaatccgcc -3'
(R):5'- ttcccagcacccacacc -3'
Posted On 2014-04-24