Mutagenetix > Incidental Mutation

Incidental Mutation 'R1586:Surf2'

177486

Institutional Source

Beutler Lab

Gene Symbol

Surf2

Ensembl Gene

ENSMUSG00000014873

Gene Name

surfeit gene 2

Synonyms

Surf-2

MMRRC Submission

039623-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.064) question?

Stock #

R1586 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

26806380-26810184 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 26809767 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Serine at position 239 (F239S)

Ref Sequence

ENSEMBL: ENSMUSP00000015017 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000015011] [ENSMUST00000015017] [ENSMUST00000015934] [ENSMUST00000129682] [ENSMUST00000133513] [ENSMUST00000147110] [ENSMUST00000167661] [ENSMUST00000153641]

AlphaFold

P09926

Predicted Effect

probably benign
Transcript: ENSMUST00000015011

SMART Domains

Protein: ENSMUSP00000015011
Gene: ENSMUSG00000014867

Domain	Start	End	E-Value	Type
Pfam:SURF4	4	269	5.7e-132	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000015017
AA Change: F239S

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000015017
Gene: ENSMUSG00000014873
AA Change: F239S

Domain	Start	End	E-Value	Type
Pfam:SURF2	4	251	5.7e-98	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000015934

SMART Domains

Protein: ENSMUSP00000015934
Gene: ENSMUSG00000015790

Domain	Start	End	E-Value	Type
low complexity region	8	21	N/A	INTRINSIC
low complexity region	83	98	N/A	INTRINSIC
Pfam:SURF1	106	321	6.7e-50	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000125408

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000126947

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000128665

Predicted Effect

probably benign
Transcript: ENSMUST00000129682

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000135506

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000142967

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000143098

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000157066

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150776

Predicted Effect

probably benign
Transcript: ENSMUST00000133513

SMART Domains

Protein: ENSMUSP00000141317
Gene: ENSMUSG00000015790

Domain	Start	End	E-Value	Type
low complexity region	8	23	N/A	INTRINSIC
Pfam:SURF1	30	63	7.2e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000183520

Predicted Effect

probably benign
Transcript: ENSMUST00000147110

SMART Domains

Protein: ENSMUSP00000141238
Gene: ENSMUSG00000015790

Domain	Start	End	E-Value	Type
low complexity region	8	23	N/A	INTRINSIC
Pfam:SURF1	30	240	5.1e-56	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000167661

SMART Domains

Protein: ENSMUSP00000128488
Gene: ENSMUSG00000015790

Domain	Start	End	E-Value	Type
low complexity region	51	66	N/A	INTRINSIC
Pfam:SURF1	73	290	5.9e-64	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000153641

SMART Domains

Protein: ENSMUSP00000124720
Gene: ENSMUSG00000014867

Domain	Start	End	E-Value	Type
Pfam:SURF4	4	82	1.9e-33	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000129822

Meta Mutation Damage Score

0.1838

Coding Region Coverage

1x: 99.0%
3x: 98.0%
10x: 95.2%
20x: 88.8%

Validation Efficiency

93% (65/70)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene shares a bidirectional promoter with surfeit 1 (SURF1; GeneID: 6834), which is located on the opposite strand. It encodes a conserved protein that is expressed in a variety of tissues. [provided by RefSeq, Jul 2013]

Allele List at MGI

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca2	C	T	2: 25,337,228 (GRCm39)	A2361V	probably damaging	Het
Alpi	A	G	1: 87,027,923 (GRCm39)	I219T	probably damaging	Het
Anapc10	T	A	8: 80,501,772 (GRCm39)	M180K	probably benign	Het
Ank3	A	G	10: 69,713,708 (GRCm39)	I431V	probably damaging	Het
Anxa8	T	A	14: 33,815,894 (GRCm39)	D182E	probably damaging	Het
Atp1a3	T	A	7: 24,678,808 (GRCm39)	I945F	probably damaging	Het
Atp2a3	T	C	11: 72,882,570 (GRCm39)	S1019P	probably damaging	Het
Cbs	T	A	17: 31,841,448 (GRCm39)	I258F	probably damaging	Het
Cic	T	C	7: 24,985,386 (GRCm39)	S277P	probably damaging	Het
Cidea	T	A	18: 67,493,230 (GRCm39)	V83E	probably damaging	Het
Cilp	G	A	9: 65,186,997 (GRCm39)	G1031S	probably damaging	Het
Clca3a2	A	G	3: 144,516,477 (GRCm39)	I373T	possibly damaging	Het
Cpvl	T	A	6: 53,903,886 (GRCm39)	D293V	probably damaging	Het
Cryz	A	G	3: 154,317,147 (GRCm39)	N122S	probably benign	Het
Dmap1	T	C	4: 117,533,319 (GRCm39)	E245G	probably damaging	Het
Epha2	C	T	4: 141,045,916 (GRCm39)		probably benign	Het
Fam222b	C	T	11: 78,045,347 (GRCm39)	L303F	probably damaging	Het
Fastkd1	T	C	2: 69,542,492 (GRCm39)	D105G	probably benign	Het
Fat4	T	A	3: 38,943,009 (GRCm39)	L634Q	probably damaging	Het
Fbxo10	A	T	4: 45,042,036 (GRCm39)	I731N	possibly damaging	Het
Fig4	A	G	10: 41,141,423 (GRCm39)	F279L	probably damaging	Het
Guk1	A	G	11: 59,077,675 (GRCm39)	S22P	probably damaging	Het
Kmt2d	A	G	15: 98,762,934 (GRCm39)		probably benign	Het
Macf1	A	T	4: 123,403,639 (GRCm39)	S727T	probably benign	Het
Mki67	T	A	7: 135,315,701 (GRCm39)	K54*	probably null	Het
Ms4a8a	T	C	19: 11,053,696 (GRCm39)	T137A	possibly damaging	Het
Myo5c	T	C	9: 75,174,313 (GRCm39)	Y557H	probably damaging	Het
Nav3	T	A	10: 109,689,115 (GRCm39)	K387N	probably damaging	Het
Oga	T	G	19: 45,765,349 (GRCm39)	T153P	possibly damaging	Het
Or5bb10	G	T	19: 12,206,241 (GRCm39)	A223E	probably damaging	Het
Pde4c	T	A	8: 71,199,508 (GRCm39)	Y223N	probably damaging	Het
Psd	T	G	19: 46,303,237 (GRCm39)	E715A	probably damaging	Het
Rpl7	A	T	1: 16,172,807 (GRCm39)	S171T	probably benign	Het
Rrm1	A	G	7: 102,116,112 (GRCm39)	*66W	probably null	Het
Scgb1b3	T	A	7: 31,075,388 (GRCm39)	H79Q	probably damaging	Het
Serpinb9	A	T	13: 33,199,469 (GRCm39)	M255L	probably benign	Het
Slc35a4	T	C	18: 36,816,058 (GRCm39)	V296A	probably benign	Het
Smgc	G	A	15: 91,722,596 (GRCm39)	A9T	possibly damaging	Het
Snx11	C	A	11: 96,661,522 (GRCm39)	W161L	probably benign	Het
Spag17	A	G	3: 99,929,068 (GRCm39)	K533E	possibly damaging	Het
Spata31g1	A	G	4: 42,971,512 (GRCm39)	I282V	probably benign	Het
Speer4b	A	G	5: 27,702,011 (GRCm39)	S250P	probably damaging	Het
Spta1	A	T	1: 174,041,061 (GRCm39)	H1287L	probably benign	Het
Tada1	G	A	1: 166,214,319 (GRCm39)	R106H	possibly damaging	Het
Tbc1d22a	C	A	15: 86,235,852 (GRCm39)		probably null	Het
Tbcd	A	G	11: 121,387,886 (GRCm39)	Q339R	probably benign	Het
Tdrd7	A	G	4: 45,994,445 (GRCm39)	H281R	probably benign	Het
Tomm5	A	G	4: 45,107,915 (GRCm39)		probably null	Het
Ttc7	T	C	17: 87,669,373 (GRCm39)		probably null	Het
Ulk1	A	T	5: 110,937,382 (GRCm39)	F638Y	probably damaging	Het
Vps35l	T	A	7: 118,409,195 (GRCm39)	I612N	probably damaging	Het
Wdr93	C	A	7: 79,418,109 (GRCm39)	D277E	probably damaging	Het
Znrf3	T	C	11: 5,231,477 (GRCm39)	R583G	probably damaging	Het
Zscan29	T	A	2: 120,991,641 (GRCm39)	I716F	probably damaging	Het

Other mutations in Surf2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02637:Surf2	APN	2	26,809,790 (GRCm39)	missense	probably damaging	1.00
R7302:Surf2	UTSW	2	26,808,894 (GRCm39)	missense	probably damaging	1.00
R7468:Surf2	UTSW	2	26,809,354 (GRCm39)	missense	probably benign	0.42
R7985:Surf2	UTSW	2	26,809,288 (GRCm39)	missense	probably benign	0.01
X0062:Surf2	UTSW	2	26,806,433 (GRCm39)	unclassified	probably benign

Predicted Primers

PCR Primer
(F):5'- TGACTGCTCAGGAACTTCACTGC -3'
(R):5'- CGCTGCCATCTTCTGAACAGAACC -3'

Sequencing Primer
(F):5'- GGTAGACAAAGTCTCTAGTCACCTG -3'
(R):5'- TTCTGAACAGAACCTCCAGGC -3'

Posted On

2014-04-24