Mutagenetix > Incidental Mutation

Incidental Mutation 'R1590:Svs5'

177786

Institutional Source

Beutler Lab

Gene Symbol

Svs5

Ensembl Gene

ENSMUSG00000017004

Gene Name

seminal vesicle secretory protein 5

Synonyms

seminal vesicle protein F, Svp-1, Svp1, SVS V, Svp5

MMRRC Submission

039627-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.055) question?

Stock #

R1590 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

164174685-164176314 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 164079578 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 110 (S110P)

Ref Sequence

ENSEMBL: ENSMUSP00000104999 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000044953] [ENSMUST00000109374]

AlphaFold

P30933

Predicted Effect

possibly damaging
Transcript: ENSMUST00000044953
AA Change: S110P

PolyPhen 2 Score 0.856 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000042389
Gene: ENSMUSG00000040132
AA Change: S110P

Domain	Start	End	E-Value	Type
signal peptide	1	22	N/A	INTRINSIC
Pfam:SVS_QK	110	121	1.2e-6	PFAM
Pfam:SVS_QK	122	137	3.9e-3	PFAM
Pfam:SVS_QK	139	149	1.3e-5	PFAM
Pfam:SVS_QK	151	166	8.4e-4	PFAM
Pfam:SVS_QK	168	179	5.3e-6	PFAM
Pfam:SVS_QK	180	195	3.9e-3	PFAM
Pfam:SVS_QK	197	207	1.3e-5	PFAM
Pfam:SVS_QK	210	221	8.8e-5	PFAM
Pfam:SVS_QK	225	236	7.7e-6	PFAM
Pfam:SVS_QK	238	249	6.1e-6	PFAM
Pfam:SVS_QK	249	260	5.2e-4	PFAM
Pfam:SVS_QK	262	272	3.1e-5	PFAM
Pfam:SVS_QK	323	334	6.7e-5	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000109374
AA Change: S110P

PolyPhen 2 Score 0.856 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000104999
Gene: ENSMUSG00000040132
AA Change: S110P

Domain	Start	End	E-Value	Type
signal peptide	1	22	N/A	INTRINSIC
Pfam:SVS_QK	110	121	1.2e-6	PFAM
Pfam:SVS_QK	122	137	3.9e-3	PFAM
Pfam:SVS_QK	139	149	1.3e-5	PFAM
Pfam:SVS_QK	151	166	8.4e-4	PFAM
Pfam:SVS_QK	168	179	5.3e-6	PFAM
Pfam:SVS_QK	180	195	3.9e-3	PFAM
Pfam:SVS_QK	197	207	1.3e-5	PFAM
Pfam:SVS_QK	210	221	8.8e-5	PFAM
Pfam:SVS_QK	225	236	7.7e-6	PFAM
Pfam:SVS_QK	238	249	6.1e-6	PFAM
Pfam:SVS_QK	249	260	5.2e-4	PFAM
Pfam:SVS_QK	262	272	3.1e-5	PFAM
Pfam:SVS_QK	323	334	6.7e-5	PFAM

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.0%
20x: 91.4%

Validation Efficiency

97% (69/71)

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aamp	A	G	1: 74,322,370 (GRCm39)	S95P	probably damaging	Het
Ankmy1	T	C	1: 92,816,397 (GRCm39)	Y239C	probably damaging	Het
Atp12a	T	C	14: 56,617,512 (GRCm39)	S601P	probably damaging	Het
Atp1b3	T	C	9: 96,225,402 (GRCm39)	T89A	probably benign	Het
B3galt4	G	A	17: 34,169,813 (GRCm39)	R142C	probably damaging	Het
Brme1	A	T	8: 84,893,715 (GRCm39)	Q294L	probably benign	Het
Btnl2	A	T	17: 34,580,114 (GRCm39)	I216F	possibly damaging	Het
Cabs1	A	T	5: 88,127,490 (GRCm39)	H47L	probably damaging	Het
Ccdc68	T	A	18: 70,073,251 (GRCm39)	D66E	probably benign	Het
Cdc42ep4	T	C	11: 113,619,392 (GRCm39)	D333G	possibly damaging	Het
Ckmt1	G	A	2: 121,194,003 (GRCm39)	D389N	possibly damaging	Het
Dact1	G	T	12: 71,364,349 (GRCm39)	V340F	probably benign	Het
Dnah2	T	C	11: 69,412,024 (GRCm39)	T246A	probably benign	Het
Dnah2	A	G	11: 69,313,580 (GRCm39)		probably null	Het
Ecm1	G	A	3: 95,643,275 (GRCm39)	R342C	probably damaging	Het
Efcab14	A	G	4: 115,613,746 (GRCm39)		probably benign	Het
Eprs1	A	G	1: 185,133,707 (GRCm39)	T795A	probably damaging	Het
Esp36	T	A	17: 38,728,202 (GRCm39)	E26D	possibly damaging	Het
Fpr-rs7	T	C	17: 20,333,678 (GRCm39)	T271A	probably benign	Het
Fsip2	A	T	2: 82,813,131 (GRCm39)	H3150L	probably benign	Het
Gimap7	G	A	6: 48,700,953 (GRCm39)	V180M	probably damaging	Het
Gtf3c1	T	C	7: 125,275,833 (GRCm39)	H531R	possibly damaging	Het
Herc1	T	A	9: 66,399,235 (GRCm39)		probably benign	Het
Hip1r	A	G	5: 124,140,203 (GRCm39)	Y1061C	probably benign	Het
Ipo11	T	C	13: 107,023,225 (GRCm39)	Y420C	probably damaging	Het
Ipo8	T	C	6: 148,712,163 (GRCm39)		probably null	Het
Itga10	C	T	3: 96,559,054 (GRCm39)		probably benign	Het
Klhl1	A	T	14: 96,606,072 (GRCm39)	M243K	probably damaging	Het
Lrp2	A	G	2: 69,297,107 (GRCm39)		probably null	Het
Mag	T	C	7: 30,601,277 (GRCm39)	E439G	probably damaging	Het
Mcm3ap	T	A	10: 76,332,375 (GRCm39)	F1231I	probably benign	Het
Mcmdc2	C	T	1: 9,986,780 (GRCm39)	Q204*	probably null	Het
Mpl	A	C	4: 118,301,221 (GRCm39)	L548R	probably damaging	Het
Mrps2	C	T	2: 28,359,500 (GRCm39)	A119V	probably benign	Het
Myo18b	G	A	5: 113,023,132 (GRCm39)	Q87*	probably null	Het
Nfat5	A	G	8: 108,020,522 (GRCm39)	Y22C	probably damaging	Het
Nnt	T	A	13: 119,523,197 (GRCm39)	I232L	possibly damaging	Het
Or2a52	A	G	6: 43,144,846 (GRCm39)	N285D	probably damaging	Het
Or8g17	T	C	9: 38,930,253 (GRCm39)	N195D	probably benign	Het
Or9s13	G	A	1: 92,548,467 (GRCm39)	V280M	possibly damaging	Het
Parp2	C	T	14: 51,048,001 (GRCm39)	P76S	probably benign	Het
Pick1	C	T	15: 79,129,501 (GRCm39)	H169Y	probably benign	Het
Prtg	T	A	9: 72,750,089 (GRCm39)	F164L	probably benign	Het
Pygb	A	G	2: 150,659,583 (GRCm39)	D422G	possibly damaging	Het
Samd9l	C	A	6: 3,375,761 (GRCm39)	C500F	probably benign	Het
Sbno1	A	C	5: 124,522,567 (GRCm39)	N1083K	possibly damaging	Het
Septin7	C	T	9: 25,188,900 (GRCm39)	S77F	probably damaging	Het
Slc25a44	A	G	3: 88,323,314 (GRCm39)	V264A	possibly damaging	Het
Slco1a8	C	T	6: 141,926,598 (GRCm39)	S576N	probably benign	Het
Slf2	G	T	19: 44,930,512 (GRCm39)	E530*	probably null	Het
Tmbim7	G	T	5: 3,715,338 (GRCm39)		probably null	Het
Tpgs2	T	C	18: 25,273,630 (GRCm39)	D177G	probably damaging	Het
Uba1y	T	A	Y: 826,893 (GRCm39)	F516L	probably damaging	Het
Ulk1	A	G	5: 110,943,632 (GRCm39)	V211A	probably damaging	Het
Vmn1r237	T	A	17: 21,534,301 (GRCm39)	I8N	probably damaging	Het
Vmn2r103	G	T	17: 20,014,496 (GRCm39)	M429I	probably benign	Het
Vmn2r112	T	C	17: 22,833,989 (GRCm39)		probably null	Het
Vmn2r84	T	C	10: 130,227,349 (GRCm39)		probably null	Het
Vwa8	C	T	14: 79,145,670 (GRCm39)	R116C	probably damaging	Het

Other mutations in Svs5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00508:Svs5	APN	2	164,078,962 (GRCm39)	missense	possibly damaging	0.86
IGL01722:Svs5	APN	2	164,079,446 (GRCm39)	missense	possibly damaging	0.71
IGL03189:Svs5	APN	2	164,079,032 (GRCm39)	missense	possibly damaging	0.73
IGL03378:Svs5	APN	2	164,175,260 (GRCm39)	missense	probably benign	0.00
R0781:Svs5	UTSW	2	164,175,507 (GRCm39)	missense	probably benign	0.16
R1110:Svs5	UTSW	2	164,175,507 (GRCm39)	missense	probably benign	0.16
R1276:Svs5	UTSW	2	164,079,168 (GRCm39)	missense	possibly damaging	0.95
R1541:Svs5	UTSW	2	164,078,929 (GRCm39)	missense	possibly damaging	0.71
R3103:Svs5	UTSW	2	164,175,313 (GRCm39)	missense	probably benign	0.00
R3946:Svs5	UTSW	2	164,079,047 (GRCm39)	missense	probably benign	0.01
R3965:Svs5	UTSW	2	164,079,662 (GRCm39)	missense	possibly damaging	0.53
R4075:Svs5	UTSW	2	164,079,238 (GRCm39)	missense	probably benign	0.01
R4632:Svs5	UTSW	2	164,079,667 (GRCm39)	missense	probably benign	0.40
R4732:Svs5	UTSW	2	164,079,043 (GRCm39)	missense	possibly damaging	0.87
R4733:Svs5	UTSW	2	164,079,043 (GRCm39)	missense	possibly damaging	0.87
R4839:Svs5	UTSW	2	164,078,806 (GRCm39)	missense	probably benign	0.40
R5706:Svs5	UTSW	2	164,079,589 (GRCm39)	missense	possibly damaging	0.53
R6936:Svs5	UTSW	2	164,079,548 (GRCm39)	missense	possibly damaging	0.86
R7052:Svs5	UTSW	2	164,080,126 (GRCm39)	missense	unknown
R7338:Svs5	UTSW	2	164,174,728 (GRCm39)	missense	possibly damaging	0.96
R7836:Svs5	UTSW	2	164,079,500 (GRCm39)	missense	possibly damaging	0.86
R8017:Svs5	UTSW	2	164,175,341 (GRCm39)	missense	possibly damaging	0.86
R8019:Svs5	UTSW	2	164,175,341 (GRCm39)	missense	possibly damaging	0.86
R8035:Svs5	UTSW	2	164,079,053 (GRCm39)	missense	probably benign	0.18
R8100:Svs5	UTSW	2	164,079,712 (GRCm39)	missense	probably benign	0.08
R8187:Svs5	UTSW	2	164,079,692 (GRCm39)	missense	possibly damaging	0.88
R8310:Svs5	UTSW	2	164,080,091 (GRCm39)	missense	probably damaging	1.00
R8312:Svs5	UTSW	2	164,080,091 (GRCm39)	missense	probably damaging	1.00
R9089:Svs5	UTSW	2	164,079,341 (GRCm39)	missense	probably benign	0.27
R9156:Svs5	UTSW	2	164,079,509 (GRCm39)	missense	probably benign	0.32
R9545:Svs5	UTSW	2	164,079,313 (GRCm39)	missense	possibly damaging	0.52
R9790:Svs5	UTSW	2	164,078,918 (GRCm39)	nonsense	probably null
R9791:Svs5	UTSW	2	164,078,918 (GRCm39)	nonsense	probably null
Z1176:Svs5	UTSW	2	164,174,711 (GRCm39)	missense	possibly damaging	0.73

Predicted Primers

PCR Primer
(F):5'- GCTGGTCCTCCAGATTTCAACTGAC -3'
(R):5'- TTACCAGGGGCTACAAAAGGCCAC -3'

Sequencing Primer
(F):5'- TGACCACCGGATTTCAGC -3'
(R):5'- CAGCTCCTCAGAGGGATTTATGC -3'

Posted On

2014-04-24