Mutagenetix > Incidental Mutation

Incidental Mutation 'F5770:Tiam1'

178032

Institutional Source

Beutler Lab

Gene Symbol

Tiam1

Ensembl Gene

ENSMUSG00000002489

Gene Name

T cell lymphoma invasion and metastasis 1

Synonyms

D16Ium10, D16Ium10e

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

F5770 (G1)

Quality Score

139

Status

Validated

Chromosome

Chromosomal Location

89583999-89940657 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 89662159 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Histidine at position 653 (R653H)

Ref Sequence

ENSEMBL: ENSMUSP00000132137 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000002588] [ENSMUST00000114124] [ENSMUST00000163370]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000002588
AA Change: R653H

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000002588
Gene: ENSMUSG00000002489
AA Change: R653H

Domain	Start	End	E-Value	Type
low complexity region	52	67	N/A	INTRINSIC
low complexity region	178	189	N/A	INTRINSIC
low complexity region	367	377	N/A	INTRINSIC
PH	434	549	1.32e-13	SMART
low complexity region	573	586	N/A	INTRINSIC
low complexity region	683	695	N/A	INTRINSIC
RBD	765	832	1.76e-22	SMART
PDZ	856	928	1.15e-5	SMART
low complexity region	1013	1028	N/A	INTRINSIC
RhoGEF	1044	1233	1.42e-63	SMART
PH	1262	1397	9.58e-2	SMART
low complexity region	1445	1454	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000114124
AA Change: R653H

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000109759
Gene: ENSMUSG00000002489
AA Change: R653H

Domain	Start	End	E-Value	Type
low complexity region	52	67	N/A	INTRINSIC
low complexity region	178	189	N/A	INTRINSIC
low complexity region	367	377	N/A	INTRINSIC
PH	434	549	1.32e-13	SMART
low complexity region	573	586	N/A	INTRINSIC
low complexity region	683	695	N/A	INTRINSIC
RBD	765	832	1.76e-22	SMART
PDZ	856	928	1.15e-5	SMART
low complexity region	1013	1028	N/A	INTRINSIC
RhoGEF	1044	1233	1.42e-63	SMART
PH	1262	1397	9.58e-2	SMART
low complexity region	1445	1454	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000163370
AA Change: R653H

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000132137
Gene: ENSMUSG00000002489
AA Change: R653H

Domain	Start	End	E-Value	Type
low complexity region	52	67	N/A	INTRINSIC
low complexity region	178	189	N/A	INTRINSIC
low complexity region	367	377	N/A	INTRINSIC
PH	434	549	1.32e-13	SMART
low complexity region	573	586	N/A	INTRINSIC
low complexity region	683	695	N/A	INTRINSIC
RBD	765	832	1.76e-22	SMART
PDZ	856	928	1.15e-5	SMART
low complexity region	1013	1028	N/A	INTRINSIC
RhoGEF	1044	1233	1.42e-63	SMART
PH	1262	1397	9.58e-2	SMART
low complexity region	1445	1454	N/A	INTRINSIC

Meta Mutation Damage Score

0.3272

Coding Region Coverage

1x: 0.0%
3x: 0.0%
10x: 0.0%
20x: 0.0%

Validation Efficiency

99% (96/97)

MGI Phenotype

PHENOTYPE: Mice homozygous for a targeted null allele display resistance to chemically-induced tumors, however, tumors that do develop progress to malignancy. Mice homozygous for a gene trap allele display anencephaly, exencephaly and/or neural tube defects. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 87 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9530002B09Rik	A	T	4: 122,595,050 (GRCm39)	H102L	possibly damaging	Het
Abcb5	T	A	12: 118,849,914 (GRCm39)	M950L	probably benign	Het
Ahcy	G	A	2: 154,906,841 (GRCm39)	R151*	probably null	Het
Arhgef38	T	G	3: 132,855,301 (GRCm39)	H262P	probably damaging	Het
Atp6v1h	A	G	1: 5,194,666 (GRCm39)	T282A	possibly damaging	Het
Camk2g	T	C	14: 20,789,380 (GRCm39)		probably benign	Het
Casp8ap2	C	T	4: 32,639,944 (GRCm39)	H333Y	probably benign	Het
Cd36	ACTGTCTGT	ACTGT	5: 18,025,526 (GRCm39)		probably null	Het
Cdc42bpb	C	T	12: 111,262,825 (GRCm39)	G1501S	probably benign	Het
Cfi	T	A	3: 129,648,641 (GRCm39)	I175K	possibly damaging	Het
Clasp1	G	A	1: 118,509,078 (GRCm39)	R1027Q	probably damaging	Het
D630003M21Rik	T	C	2: 158,042,931 (GRCm39)	T870A	probably benign	Het
Dcaf4	C	A	12: 83,584,475 (GRCm39)		probably null	Het
Dnah12	T	A	14: 26,495,050 (GRCm39)	N1369K	possibly damaging	Het
Dnajc22	T	A	15: 98,999,363 (GRCm39)	Y183N	probably damaging	Het
Dpyd	C	T	3: 118,690,775 (GRCm39)	Q295*	probably null	Het
Dync2i1	A	C	12: 116,175,460 (GRCm39)	S906A	possibly damaging	Het
Erv3	T	C	2: 131,697,846 (GRCm39)	H171R	possibly damaging	Het
Fam221b	T	C	4: 43,665,865 (GRCm39)	T249A	probably benign	Het
Fbrsl1	C	T	5: 110,527,292 (GRCm39)	A129T	possibly damaging	Het
Fcgr1	T	C	3: 96,191,592 (GRCm39)	*405W	probably null	Het
Gdap1l1	C	T	2: 163,289,406 (GRCm39)		probably benign	Het
Glrx3	A	G	7: 137,060,882 (GRCm39)	H172R	probably benign	Het
Gm10770	T	A	2: 150,021,404 (GRCm39)	K38*	probably null	Het
Gm20517	G	A	17: 47,929,757 (GRCm39)	V65M	probably damaging	Het
Gm4787	G	A	12: 81,424,341 (GRCm39)	Q606*	probably null	Het
Golga4	A	G	9: 118,385,143 (GRCm39)	E727G	possibly damaging	Het
Got1	T	A	19: 43,489,000 (GRCm39)		probably benign	Het
Heatr5a	A	G	12: 51,928,061 (GRCm39)		probably benign	Het
Hira	G	A	16: 18,713,571 (GRCm39)	A29T	probably damaging	Het
Hnrnpab	A	T	11: 51,493,451 (GRCm39)	N252K	probably benign	Het
Ing1	T	C	8: 11,611,934 (GRCm39)	V124A	probably damaging	Het
Izumo4	A	T	10: 80,539,725 (GRCm39)	T155S	probably benign	Het
Kcnb2	A	G	1: 15,780,315 (GRCm39)	I396V	probably benign	Het
Klc1	A	T	12: 111,741,006 (GRCm39)	I161F	probably benign	Het
Lpar5	C	A	6: 125,058,690 (GRCm39)	A137E	possibly damaging	Het
Lrp4	C	T	2: 91,318,863 (GRCm39)	S900L	possibly damaging	Het
Lrrc37a	T	G	11: 103,346,338 (GRCm39)	N3176T	possibly damaging	Het
Mbd5	A	G	2: 49,206,422 (GRCm39)	D1713G	probably damaging	Het
Mctp2	T	A	7: 71,771,499 (GRCm39)		probably benign	Het
Muc6	T	G	7: 141,233,880 (GRCm39)	E808A	probably benign	Het
Mylk	G	T	16: 34,815,574 (GRCm39)		probably null	Het
Myrfl	T	C	10: 116,697,435 (GRCm39)	T30A	probably damaging	Het
Nbeal2	A	G	9: 110,467,005 (GRCm39)	V670A	possibly damaging	Het
Nphp3	T	C	9: 103,913,093 (GRCm39)		probably null	Het
Numbl	T	C	7: 26,979,027 (GRCm39)	S379P	probably benign	Het
Or10j7	G	T	1: 173,011,531 (GRCm39)	L157I	probably benign	Het
Or5an6	G	A	19: 12,371,914 (GRCm39)	V96I	probably benign	Het
Or5p57	G	T	7: 107,665,885 (GRCm39)	T40K	probably benign	Het
Otop3	T	A	11: 115,235,664 (GRCm39)	L432Q	probably damaging	Het
Papln	C	T	12: 83,825,608 (GRCm39)	R608C	possibly damaging	Het
Pelp1	T	A	11: 70,288,976 (GRCm39)	T257S	probably damaging	Het
Pigx	T	C	16: 31,906,240 (GRCm39)	D129G	probably damaging	Het
Pik3cd	A	C	4: 149,741,776 (GRCm39)	L390R	probably damaging	Het
Plekhb1	T	C	7: 100,303,825 (GRCm39)	T112A	probably benign	Het
Ppwd1	A	G	13: 104,356,745 (GRCm39)	Y257H	probably damaging	Het
Prkcb	G	T	7: 122,127,699 (GRCm39)	W274C	probably damaging	Het
Rabep1	T	C	11: 70,828,342 (GRCm39)		probably benign	Het
Ralgapa1	G	A	12: 55,842,438 (GRCm39)		probably benign	Het
Rasa1	A	G	13: 85,375,064 (GRCm39)		probably null	Het
Rbbp8nl	T	A	2: 179,920,001 (GRCm39)	T558S	probably benign	Het
Recql4	T	C	15: 76,590,369 (GRCm39)	D705G	possibly damaging	Het
Ror1	A	G	4: 100,298,130 (GRCm39)	Q501R	probably damaging	Het
Rundc3b	TGCCGCCGCCGCCGCCGCCGCCGCCGC	TGCCGCCGCCGCCGCCGCCGCCGC	5: 8,672,549 (GRCm39)		probably benign	Het
Sirpb1b	A	G	3: 15,568,243 (GRCm39)	V366A	probably benign	Het
Slc30a4	T	A	2: 122,531,458 (GRCm39)	M136L	probably benign	Het
Slc5a6	C	T	5: 31,199,957 (GRCm39)		probably null	Het
Spaca1	T	C	4: 34,039,311 (GRCm39)	E192G	probably damaging	Het
Spata31	C	A	13: 65,069,462 (GRCm39)	P537T	probably benign	Het
Sptbn2	C	T	19: 4,800,660 (GRCm39)	R2292C	probably damaging	Het
Thbd	A	T	2: 148,249,110 (GRCm39)	Y253N	probably benign	Het
Tmc3	T	C	7: 83,271,713 (GRCm39)	V955A	probably benign	Het
Tnrc6c	G	A	11: 117,614,152 (GRCm39)	R770H	probably damaging	Het
Toe1	A	T	4: 116,663,308 (GRCm39)	N56K	probably damaging	Het
Tprkb	A	G	6: 85,905,764 (GRCm39)	K150E	probably damaging	Het
Trps1	T	C	15: 50,694,973 (GRCm39)	K150E	probably damaging	Het
Tspyl3	A	G	2: 153,066,980 (GRCm39)	V86A	probably benign	Het
Ttc23	T	C	7: 67,359,063 (GRCm39)		probably benign	Het
Ttc36	A	T	9: 44,713,094 (GRCm39)		probably benign	Het
Tubb3	C	T	8: 124,138,414 (GRCm39)		probably benign	Het
Vmn2r68	C	T	7: 84,871,088 (GRCm39)	V732I	probably benign	Het
Vps18	A	G	2: 119,127,709 (GRCm39)	Y844C	probably benign	Het
Wdr72	T	A	9: 74,064,552 (GRCm39)	I528N	probably damaging	Het
Zfp292	C	T	4: 34,806,783 (GRCm39)	C2087Y	possibly damaging	Het
Zfp606	T	G	7: 12,215,123 (GRCm39)		probably benign	Het
Zfp933	G	A	4: 147,910,927 (GRCm39)	A223V	probably damaging	Het
Zmynd8	G	A	2: 165,654,314 (GRCm39)	R724*	probably null	Het

Other mutations in Tiam1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00929:Tiam1	APN	16	89,591,627 (GRCm39)	missense	probably damaging	1.00
IGL01356:Tiam1	APN	16	89,634,676 (GRCm39)	missense	probably damaging	0.99
IGL01583:Tiam1	APN	16	89,586,168 (GRCm39)	missense	probably damaging	1.00
IGL01626:Tiam1	APN	16	89,609,856 (GRCm39)	missense	probably damaging	1.00
IGL01802:Tiam1	APN	16	89,695,260 (GRCm39)	missense	possibly damaging	0.94
IGL01818:Tiam1	APN	16	89,664,592 (GRCm39)	missense	probably damaging	1.00
IGL02146:Tiam1	APN	16	89,646,569 (GRCm39)	missense	probably benign	0.20
IGL02329:Tiam1	APN	16	89,596,924 (GRCm39)	missense	probably benign	0.08
IGL02341:Tiam1	APN	16	89,695,257 (GRCm39)	missense	probably damaging	1.00
IGL02622:Tiam1	APN	16	89,595,588 (GRCm39)	missense	possibly damaging	0.59
PIT4515001:Tiam1	UTSW	16	89,657,130 (GRCm39)	missense	probably damaging	0.99
R0130:Tiam1	UTSW	16	89,694,642 (GRCm39)	missense	probably benign	0.01
R0143:Tiam1	UTSW	16	89,695,088 (GRCm39)	missense	probably benign	0.01
R0158:Tiam1	UTSW	16	89,589,889 (GRCm39)	critical splice donor site	probably benign
R0413:Tiam1	UTSW	16	89,606,253 (GRCm39)	splice site	probably benign
R0449:Tiam1	UTSW	16	89,634,715 (GRCm39)	missense	possibly damaging	0.75
R0520:Tiam1	UTSW	16	89,614,839 (GRCm39)	splice site	probably benign
R0667:Tiam1	UTSW	16	89,694,872 (GRCm39)	missense	probably damaging	1.00
R0787:Tiam1	UTSW	16	89,586,449 (GRCm39)	missense	probably damaging	1.00
R1355:Tiam1	UTSW	16	89,695,109 (GRCm39)	missense	probably benign	0.09
R1370:Tiam1	UTSW	16	89,695,109 (GRCm39)	missense	probably benign	0.09
R1534:Tiam1	UTSW	16	89,664,396 (GRCm39)	critical splice donor site	probably null
R1769:Tiam1	UTSW	16	89,657,167 (GRCm39)	missense	probably damaging	1.00
R1831:Tiam1	UTSW	16	89,657,182 (GRCm39)	missense	probably benign	0.01
R1913:Tiam1	UTSW	16	89,595,582 (GRCm39)	missense	probably damaging	1.00
R2022:Tiam1	UTSW	16	89,674,075 (GRCm39)	missense	probably benign
R2140:Tiam1	UTSW	16	89,646,533 (GRCm39)	splice site	probably benign
R2383:Tiam1	UTSW	16	89,595,572 (GRCm39)	missense	probably benign	0.29
R2697:Tiam1	UTSW	16	89,590,052 (GRCm39)	missense	probably benign	0.00
R4118:Tiam1	UTSW	16	89,673,921 (GRCm39)	splice site	probably null
R4327:Tiam1	UTSW	16	89,652,779 (GRCm39)	missense	possibly damaging	0.80
R4693:Tiam1	UTSW	16	89,640,170 (GRCm39)	missense	possibly damaging	0.87
R5104:Tiam1	UTSW	16	89,614,929 (GRCm39)	missense	probably benign	0.00
R5412:Tiam1	UTSW	16	89,681,753 (GRCm39)	missense	possibly damaging	0.52
R5426:Tiam1	UTSW	16	89,662,280 (GRCm39)	missense	possibly damaging	0.58
R5600:Tiam1	UTSW	16	89,662,253 (GRCm39)	missense	probably damaging	1.00
R5842:Tiam1	UTSW	16	89,652,887 (GRCm39)	missense	probably benign
R5986:Tiam1	UTSW	16	89,586,074 (GRCm39)	missense	probably benign	0.31
R6077:Tiam1	UTSW	16	89,594,918 (GRCm39)	critical splice donor site	probably null
R6419:Tiam1	UTSW	16	89,694,912 (GRCm39)	nonsense	probably null
R6525:Tiam1	UTSW	16	89,655,485 (GRCm39)	critical splice donor site	probably null
R6950:Tiam1	UTSW	16	89,657,092 (GRCm39)	critical splice donor site	probably null
R7127:Tiam1	UTSW	16	89,657,148 (GRCm39)	missense	probably damaging	1.00
R7197:Tiam1	UTSW	16	89,681,826 (GRCm39)	missense	probably damaging	1.00
R7249:Tiam1	UTSW	16	89,640,143 (GRCm39)	missense	probably damaging	1.00
R7490:Tiam1	UTSW	16	89,695,083 (GRCm39)	missense	probably benign	0.01
R7825:Tiam1	UTSW	16	89,694,977 (GRCm39)	missense	probably benign	0.07
R8047:Tiam1	UTSW	16	89,694,672 (GRCm39)	missense	probably benign	0.00
R8069:Tiam1	UTSW	16	89,586,146 (GRCm39)	missense	probably benign
R8247:Tiam1	UTSW	16	89,695,037 (GRCm39)	missense	probably benign	0.26
R8490:Tiam1	UTSW	16	89,681,932 (GRCm39)	missense	probably damaging	0.99
R8678:Tiam1	UTSW	16	89,681,709 (GRCm39)	nonsense	probably null
R8690:Tiam1	UTSW	16	89,694,900 (GRCm39)	missense	probably damaging	1.00
R8839:Tiam1	UTSW	16	89,681,827 (GRCm39)	missense	probably damaging	1.00
R8857:Tiam1	UTSW	16	89,662,145 (GRCm39)	missense	probably damaging	0.97
R8935:Tiam1	UTSW	16	89,681,821 (GRCm39)	missense	probably damaging	1.00
R8972:Tiam1	UTSW	16	89,609,894 (GRCm39)	missense	probably damaging	1.00
R9047:Tiam1	UTSW	16	89,601,776 (GRCm39)	intron	probably benign
R9131:Tiam1	UTSW	16	89,657,155 (GRCm39)	missense	probably damaging	1.00
R9229:Tiam1	UTSW	16	89,634,719 (GRCm39)	missense	possibly damaging	0.94
R9383:Tiam1	UTSW	16	89,655,561 (GRCm39)	missense	probably damaging	1.00
R9431:Tiam1	UTSW	16	89,594,918 (GRCm39)	critical splice donor site	probably null
R9519:Tiam1	UTSW	16	89,608,822 (GRCm39)	missense	probably benign	0.06
R9567:Tiam1	UTSW	16	89,591,653 (GRCm39)	missense	probably damaging	1.00
R9656:Tiam1	UTSW	16	89,664,459 (GRCm39)	missense	probably damaging	1.00
R9714:Tiam1	UTSW	16	89,694,647 (GRCm39)	missense	probably benign	0.00
R9750:Tiam1	UTSW	16	89,695,394 (GRCm39)	missense	probably damaging	1.00
V7582:Tiam1	UTSW	16	89,662,159 (GRCm39)	missense	probably damaging	1.00
Z1176:Tiam1	UTSW	16	89,662,163 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

Posted On

2014-05-07