Incidental Mutation 'IGL01861:Lingo2'
ID |
178324 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Lingo2
|
Ensembl Gene |
ENSMUSG00000045083 |
Gene Name |
leucine rich repeat and Ig domain containing 2 |
Synonyms |
Lrrn6c, LERN3, B230217C06Rik |
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.109)
|
Stock # |
IGL01861
|
Quality Score |
|
Status
|
|
Chromosome |
4 |
Chromosomal Location |
35706647-36951747 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to T
at 35709526 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Aspartic acid to Glutamic Acid
at position 151
(D151E)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000130423
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000065173]
[ENSMUST00000098151]
[ENSMUST00000108122]
[ENSMUST00000108124]
[ENSMUST00000164772]
|
AlphaFold |
Q3URE9 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000065173
AA Change: D151E
PolyPhen 2
Score 0.312 (Sensitivity: 0.90; Specificity: 0.89)
|
SMART Domains |
Protein: ENSMUSP00000069772 Gene: ENSMUSG00000045083 AA Change: D151E
Domain | Start | End | E-Value | Type |
LRRNT
|
27 |
61 |
1.86e-4 |
SMART |
LRR
|
80 |
103 |
5.89e1 |
SMART |
LRR_TYP
|
104 |
127 |
8.22e-2 |
SMART |
LRR
|
128 |
151 |
6.57e-1 |
SMART |
LRR
|
152 |
175 |
1.31e0 |
SMART |
LRR
|
176 |
199 |
4.83e0 |
SMART |
LRR
|
200 |
223 |
1.62e2 |
SMART |
low complexity region
|
249 |
263 |
N/A |
INTRINSIC |
LRR
|
272 |
295 |
2.17e-1 |
SMART |
LRR
|
296 |
319 |
8.01e0 |
SMART |
LRR_TYP
|
320 |
343 |
7.15e-2 |
SMART |
LRRCT
|
355 |
408 |
3.7e-2 |
SMART |
IGc2
|
423 |
490 |
9.99e-13 |
SMART |
transmembrane domain
|
543 |
565 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000098151
AA Change: D151E
PolyPhen 2
Score 0.312 (Sensitivity: 0.90; Specificity: 0.89)
|
SMART Domains |
Protein: ENSMUSP00000095754 Gene: ENSMUSG00000045083 AA Change: D151E
Domain | Start | End | E-Value | Type |
LRRNT
|
27 |
61 |
1.86e-4 |
SMART |
LRR
|
80 |
103 |
5.89e1 |
SMART |
LRR_TYP
|
104 |
127 |
8.22e-2 |
SMART |
LRR
|
128 |
151 |
6.57e-1 |
SMART |
LRR
|
152 |
175 |
1.31e0 |
SMART |
LRR
|
176 |
199 |
4.83e0 |
SMART |
LRR
|
200 |
223 |
1.62e2 |
SMART |
low complexity region
|
249 |
263 |
N/A |
INTRINSIC |
LRR
|
272 |
295 |
2.17e-1 |
SMART |
LRR
|
296 |
319 |
8.01e0 |
SMART |
LRR_TYP
|
320 |
343 |
7.15e-2 |
SMART |
LRRCT
|
355 |
408 |
3.7e-2 |
SMART |
IGc2
|
423 |
490 |
9.99e-13 |
SMART |
transmembrane domain
|
543 |
565 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000108122
AA Change: D151E
PolyPhen 2
Score 0.312 (Sensitivity: 0.90; Specificity: 0.89)
|
SMART Domains |
Protein: ENSMUSP00000103757 Gene: ENSMUSG00000045083 AA Change: D151E
Domain | Start | End | E-Value | Type |
LRRNT
|
27 |
61 |
1.86e-4 |
SMART |
LRR
|
80 |
103 |
5.89e1 |
SMART |
LRR_TYP
|
104 |
127 |
8.22e-2 |
SMART |
LRR
|
128 |
151 |
6.57e-1 |
SMART |
LRR
|
152 |
175 |
1.31e0 |
SMART |
LRR
|
176 |
199 |
4.83e0 |
SMART |
LRR
|
200 |
223 |
1.62e2 |
SMART |
low complexity region
|
249 |
263 |
N/A |
INTRINSIC |
LRR
|
272 |
295 |
2.17e-1 |
SMART |
LRR
|
296 |
319 |
8.01e0 |
SMART |
LRR_TYP
|
320 |
343 |
7.15e-2 |
SMART |
LRRCT
|
355 |
408 |
3.7e-2 |
SMART |
IGc2
|
423 |
490 |
9.99e-13 |
SMART |
transmembrane domain
|
543 |
565 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000108124
AA Change: D151E
PolyPhen 2
Score 0.312 (Sensitivity: 0.90; Specificity: 0.89)
|
SMART Domains |
Protein: ENSMUSP00000103759 Gene: ENSMUSG00000045083 AA Change: D151E
Domain | Start | End | E-Value | Type |
LRRNT
|
27 |
61 |
1.86e-4 |
SMART |
LRR
|
80 |
103 |
5.89e1 |
SMART |
LRR_TYP
|
104 |
127 |
8.22e-2 |
SMART |
LRR
|
128 |
151 |
6.57e-1 |
SMART |
LRR
|
152 |
175 |
1.31e0 |
SMART |
LRR
|
176 |
199 |
4.83e0 |
SMART |
LRR
|
200 |
223 |
1.62e2 |
SMART |
low complexity region
|
249 |
263 |
N/A |
INTRINSIC |
LRR
|
272 |
295 |
2.17e-1 |
SMART |
LRR
|
296 |
319 |
8.01e0 |
SMART |
LRR_TYP
|
320 |
343 |
7.15e-2 |
SMART |
LRRCT
|
355 |
408 |
3.7e-2 |
SMART |
IGc2
|
423 |
490 |
9.99e-13 |
SMART |
transmembrane domain
|
543 |
565 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000164772
AA Change: D151E
PolyPhen 2
Score 0.312 (Sensitivity: 0.90; Specificity: 0.89)
|
SMART Domains |
Protein: ENSMUSP00000130423 Gene: ENSMUSG00000045083 AA Change: D151E
Domain | Start | End | E-Value | Type |
LRRNT
|
27 |
61 |
1.86e-4 |
SMART |
LRR
|
80 |
103 |
5.89e1 |
SMART |
LRR_TYP
|
104 |
127 |
8.22e-2 |
SMART |
LRR
|
128 |
151 |
6.57e-1 |
SMART |
LRR
|
152 |
175 |
1.31e0 |
SMART |
LRR
|
176 |
199 |
4.83e0 |
SMART |
LRR
|
200 |
223 |
1.62e2 |
SMART |
low complexity region
|
249 |
263 |
N/A |
INTRINSIC |
LRR
|
272 |
295 |
2.17e-1 |
SMART |
LRR
|
296 |
319 |
8.01e0 |
SMART |
LRR_TYP
|
320 |
343 |
7.15e-2 |
SMART |
LRRCT
|
355 |
408 |
3.7e-2 |
SMART |
IGc2
|
423 |
490 |
9.99e-13 |
SMART |
transmembrane domain
|
543 |
565 |
N/A |
INTRINSIC |
|
Coding Region Coverage |
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 32 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Arrdc5 |
T |
C |
17: 56,607,144 (GRCm39) |
T34A |
possibly damaging |
Het |
Atm |
C |
A |
9: 53,405,912 (GRCm39) |
R1252L |
probably null |
Het |
Cd34 |
T |
C |
1: 194,640,888 (GRCm39) |
|
probably benign |
Het |
Cmya5 |
A |
G |
13: 93,226,256 (GRCm39) |
V2944A |
probably damaging |
Het |
Cntnap3 |
C |
T |
13: 64,946,922 (GRCm39) |
G169D |
probably damaging |
Het |
Dnah7a |
T |
A |
1: 53,679,508 (GRCm39) |
T326S |
probably benign |
Het |
Dnah7a |
C |
T |
1: 53,623,608 (GRCm39) |
|
probably benign |
Het |
Fam133b |
A |
G |
5: 3,614,242 (GRCm39) |
|
probably benign |
Het |
Fhod1 |
A |
G |
8: 106,057,808 (GRCm39) |
S906P |
probably damaging |
Het |
Gli3 |
A |
G |
13: 15,899,910 (GRCm39) |
Y1099C |
probably damaging |
Het |
Gpr63 |
C |
T |
4: 25,008,545 (GRCm39) |
T423M |
probably damaging |
Het |
Hpx |
A |
T |
7: 105,241,393 (GRCm39) |
Y339* |
probably null |
Het |
Mill2 |
A |
T |
7: 18,590,565 (GRCm39) |
Q215L |
probably damaging |
Het |
Naf1 |
T |
C |
8: 67,317,185 (GRCm39) |
|
probably benign |
Het |
Ndufv1 |
A |
G |
19: 4,058,803 (GRCm39) |
V235A |
probably benign |
Het |
Or8b41 |
T |
C |
9: 38,055,046 (GRCm39) |
I205T |
probably damaging |
Het |
Pafah1b1 |
A |
T |
11: 74,581,403 (GRCm39) |
N22K |
possibly damaging |
Het |
Prune1 |
G |
T |
3: 95,172,868 (GRCm39) |
R66S |
probably damaging |
Het |
Ptcd1 |
A |
T |
5: 145,095,587 (GRCm39) |
I291N |
possibly damaging |
Het |
Ptprk |
A |
G |
10: 28,259,441 (GRCm39) |
I294V |
possibly damaging |
Het |
Rfx6 |
G |
A |
10: 51,597,675 (GRCm39) |
V471M |
probably damaging |
Het |
Rnase6 |
C |
A |
14: 51,367,748 (GRCm39) |
Q47K |
probably benign |
Het |
Skint5 |
T |
C |
4: 113,417,021 (GRCm39) |
|
probably benign |
Het |
Srcap |
T |
A |
7: 127,124,457 (GRCm39) |
|
probably benign |
Het |
Stap1 |
A |
G |
5: 86,244,383 (GRCm39) |
I217V |
possibly damaging |
Het |
Taf1d |
T |
C |
9: 15,220,035 (GRCm39) |
|
probably null |
Het |
Tecta |
T |
C |
9: 42,284,658 (GRCm39) |
H809R |
probably benign |
Het |
Tex15 |
A |
G |
8: 34,060,717 (GRCm39) |
N49S |
probably damaging |
Het |
Tubb4b-ps1 |
A |
G |
5: 7,229,374 (GRCm39) |
|
probably benign |
Het |
Uhrf2 |
A |
G |
19: 30,063,804 (GRCm39) |
Y589C |
probably damaging |
Het |
Zfp616 |
A |
T |
11: 73,973,742 (GRCm39) |
T4S |
possibly damaging |
Het |
Zfp687 |
A |
T |
3: 94,919,171 (GRCm39) |
F200L |
probably damaging |
Het |
|
Other mutations in Lingo2 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL02532:Lingo2
|
APN |
4 |
35,709,171 (GRCm39) |
missense |
possibly damaging |
0.69 |
IGL02999:Lingo2
|
APN |
4 |
35,708,744 (GRCm39) |
missense |
probably damaging |
1.00 |
R0077:Lingo2
|
UTSW |
4 |
35,708,375 (GRCm39) |
missense |
possibly damaging |
0.51 |
R0669:Lingo2
|
UTSW |
4 |
35,709,120 (GRCm39) |
missense |
probably benign |
0.00 |
R1195:Lingo2
|
UTSW |
4 |
35,708,538 (GRCm39) |
missense |
probably damaging |
1.00 |
R1195:Lingo2
|
UTSW |
4 |
35,708,538 (GRCm39) |
missense |
probably damaging |
1.00 |
R1195:Lingo2
|
UTSW |
4 |
35,708,538 (GRCm39) |
missense |
probably damaging |
1.00 |
R1403:Lingo2
|
UTSW |
4 |
35,709,420 (GRCm39) |
missense |
possibly damaging |
0.83 |
R1403:Lingo2
|
UTSW |
4 |
35,709,420 (GRCm39) |
missense |
possibly damaging |
0.83 |
R1552:Lingo2
|
UTSW |
4 |
35,708,315 (GRCm39) |
missense |
probably damaging |
0.99 |
R2066:Lingo2
|
UTSW |
4 |
35,709,179 (GRCm39) |
missense |
probably benign |
|
R4207:Lingo2
|
UTSW |
4 |
35,709,810 (GRCm39) |
missense |
probably benign |
0.01 |
R4208:Lingo2
|
UTSW |
4 |
35,709,810 (GRCm39) |
missense |
probably benign |
0.01 |
R4326:Lingo2
|
UTSW |
4 |
35,708,462 (GRCm39) |
missense |
probably damaging |
1.00 |
R4327:Lingo2
|
UTSW |
4 |
35,708,462 (GRCm39) |
missense |
probably damaging |
1.00 |
R4328:Lingo2
|
UTSW |
4 |
35,708,462 (GRCm39) |
missense |
probably damaging |
1.00 |
R4474:Lingo2
|
UTSW |
4 |
35,708,810 (GRCm39) |
missense |
probably benign |
|
R6801:Lingo2
|
UTSW |
4 |
35,709,566 (GRCm39) |
missense |
probably damaging |
0.97 |
R7343:Lingo2
|
UTSW |
4 |
35,709,450 (GRCm39) |
missense |
possibly damaging |
0.88 |
R7629:Lingo2
|
UTSW |
4 |
35,708,675 (GRCm39) |
missense |
possibly damaging |
0.88 |
R7740:Lingo2
|
UTSW |
4 |
35,709,248 (GRCm39) |
missense |
probably damaging |
0.98 |
R7867:Lingo2
|
UTSW |
4 |
35,709,302 (GRCm39) |
missense |
probably benign |
|
R7995:Lingo2
|
UTSW |
4 |
35,709,425 (GRCm39) |
missense |
probably damaging |
1.00 |
R8909:Lingo2
|
UTSW |
4 |
35,708,349 (GRCm39) |
missense |
probably damaging |
0.99 |
R9418:Lingo2
|
UTSW |
4 |
35,709,035 (GRCm39) |
missense |
probably benign |
0.38 |
R9612:Lingo2
|
UTSW |
4 |
35,708,450 (GRCm39) |
missense |
probably damaging |
0.99 |
R9633:Lingo2
|
UTSW |
4 |
35,709,885 (GRCm39) |
missense |
|
|
R9764:Lingo2
|
UTSW |
4 |
35,709,750 (GRCm39) |
missense |
possibly damaging |
0.55 |
R9775:Lingo2
|
UTSW |
4 |
35,708,781 (GRCm39) |
missense |
probably benign |
0.16 |
Z1177:Lingo2
|
UTSW |
4 |
35,709,656 (GRCm39) |
missense |
probably benign |
0.17 |
|
Posted On |
2014-05-07 |