Incidental Mutation 'IGL01870:Irak4'
| ID |
178678 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Irak4
|
| Ensembl Gene |
ENSMUSG00000059883 |
| Gene Name |
interleukin-1 receptor-associated kinase 4 |
| Synonyms |
9330209D03Rik, 8430405M07Rik, IRAK-4, NY-REN-64 |
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.463)
|
| Stock # |
IGL01870
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
15 |
| Chromosomal Location |
94441495-94466198 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 94445751 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Tyrosine to Histidine
at position 10
(Y10H)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000104871
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000049151]
[ENSMUST00000074936]
[ENSMUST00000109248]
[ENSMUST00000134061]
|
| AlphaFold |
Q8R4K2 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000049151
|
| SMART Domains |
Protein: ENSMUSP00000044075
Gene: ENSMUSG00000033356
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:TruD
|
280 |
697 |
1e-70 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000074936
AA Change: Y10H
PolyPhen 2
Score 0.118 (Sensitivity: 0.93; Specificity: 0.86)
|
| SMART Domains |
Protein: ENSMUSP00000074471
Gene: ENSMUSG00000059883
AA Change: Y10H
| Domain | Start | End | E-Value | Type |
|---|
|
PDB:1WH4|A
|
1 |
114 |
1e-78 |
PDB |
|
Pfam:Pkinase_Tyr
|
187 |
454 |
3.3e-53 |
PFAM |
|
Pfam:Pkinase
|
187 |
456 |
4.9e-53 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000109248
AA Change: Y10H
PolyPhen 2
Score 0.276 (Sensitivity: 0.91; Specificity: 0.88)
|
| SMART Domains |
Protein: ENSMUSP00000104871
Gene: ENSMUSG00000059883
AA Change: Y10H
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Death
|
20 |
101 |
1.6e-6 |
PFAM |
|
Pfam:Pkinase_Tyr
|
187 |
452 |
1.9e-51 |
PFAM |
|
Pfam:Pkinase
|
188 |
452 |
1.3e-54 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000134061
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000138306
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000147832
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a kinase that activates NF-kappaB in both the Toll-like receptor (TLR) and T-cell receptor (TCR) signaling pathways. The protein is essential for most innate immune responses. Mutations in this gene result in IRAK4 deficiency and recurrent invasive pneumococcal disease. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2011]
PHENOTYPE: Homozygous mutant mice exhibit defects of the innate immune system and show increased susceptibility to bacterial infection. [provided by MGI curators]
|
| Allele List at MGI |
All alleles(6) : Targeted(5) Chemically induced(1)
|
| Other mutations in this stock |
Total: 32 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Agtr1a |
A |
G |
13: 30,565,310 (GRCm39) |
D125G |
probably damaging |
Het |
| Arhgap31 |
T |
C |
16: 38,438,604 (GRCm39) |
K300E |
probably damaging |
Het |
| Cma2 |
C |
A |
14: 56,211,194 (GRCm39) |
S162Y |
probably benign |
Het |
| Cntn4 |
A |
G |
6: 106,466,676 (GRCm39) |
T193A |
possibly damaging |
Het |
| Col22a1 |
T |
A |
15: 71,824,377 (GRCm39) |
M556L |
probably benign |
Het |
| Dld |
A |
G |
12: 31,385,466 (GRCm39) |
S292P |
possibly damaging |
Het |
| Dnah6 |
A |
T |
6: 73,009,552 (GRCm39) |
D3746E |
probably benign |
Het |
| Eea1 |
A |
G |
10: 95,809,848 (GRCm39) |
T9A |
probably damaging |
Het |
| Eeig1 |
T |
C |
2: 32,456,294 (GRCm39) |
S319P |
probably benign |
Het |
| Gbf1 |
A |
G |
19: 46,274,108 (GRCm39) |
K1714R |
probably benign |
Het |
| Gm10718 |
A |
T |
9: 3,025,118 (GRCm39) |
Y194F |
probably benign |
Het |
| H2-M1 |
A |
T |
17: 36,980,955 (GRCm39) |
M327K |
probably benign |
Het |
| Ifnz |
T |
A |
4: 88,701,548 (GRCm39) |
S176T |
possibly damaging |
Het |
| Irx5 |
T |
C |
8: 93,086,405 (GRCm39) |
F163L |
probably damaging |
Het |
| Jak3 |
C |
T |
8: 72,133,434 (GRCm39) |
P376S |
probably damaging |
Het |
| Lrrc25 |
T |
C |
8: 71,070,437 (GRCm39) |
S73P |
possibly damaging |
Het |
| Macf1 |
C |
T |
4: 123,367,906 (GRCm39) |
G2285D |
probably damaging |
Het |
| Muc4 |
A |
T |
16: 32,574,624 (GRCm39) |
T1025S |
probably benign |
Het |
| Mylk2 |
A |
G |
2: 152,757,134 (GRCm39) |
N303S |
probably benign |
Het |
| Or5v1b |
G |
A |
17: 37,841,555 (GRCm39) |
R229H |
probably benign |
Het |
| Pcnx1 |
T |
C |
12: 82,022,667 (GRCm39) |
V1512A |
probably benign |
Het |
| Phlda3 |
A |
G |
1: 135,694,376 (GRCm39) |
S64G |
probably benign |
Het |
| Pptc7 |
C |
A |
5: 122,451,665 (GRCm39) |
S40R |
probably damaging |
Het |
| Pramel19 |
T |
A |
4: 101,797,887 (GRCm39) |
L95H |
probably benign |
Het |
| Ptpn4 |
A |
C |
1: 119,603,277 (GRCm39) |
|
probably null |
Het |
| Slc10a1 |
T |
C |
12: 81,007,302 (GRCm39) |
M160V |
probably benign |
Het |
| Stac |
T |
C |
9: 111,401,400 (GRCm39) |
I349V |
probably benign |
Het |
| Synm |
A |
G |
7: 67,385,866 (GRCm39) |
S157P |
possibly damaging |
Het |
| Tbc1d9b |
T |
C |
11: 50,052,915 (GRCm39) |
L924P |
probably damaging |
Het |
| Tcaf2 |
C |
T |
6: 42,601,411 (GRCm39) |
V883I |
possibly damaging |
Het |
| Upp1 |
T |
C |
11: 9,075,700 (GRCm39) |
|
probably null |
Het |
| Whamm |
C |
T |
7: 81,245,722 (GRCm39) |
T726I |
probably damaging |
Het |
|
| Other mutations in Irak4 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00679:Irak4
|
APN |
15 |
94,454,509 (GRCm39) |
missense |
probably benign |
0.09 |
|
IGL00688:Irak4
|
APN |
15 |
94,464,744 (GRCm39) |
missense |
possibly damaging |
0.68 |
|
IGL02740:Irak4
|
APN |
15 |
94,464,925 (GRCm39) |
makesense |
probably null |
|
|
IGL02897:Irak4
|
APN |
15 |
94,451,872 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL03290:Irak4
|
APN |
15 |
94,449,780 (GRCm39) |
missense |
probably benign |
0.01 |
|
otiose
|
UTSW |
15 |
94,459,365 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0057:Irak4
|
UTSW |
15 |
94,451,753 (GRCm39) |
missense |
probably benign |
0.00 |
|
R2010:Irak4
|
UTSW |
15 |
94,449,687 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3751:Irak4
|
UTSW |
15 |
94,459,476 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3752:Irak4
|
UTSW |
15 |
94,459,476 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3753:Irak4
|
UTSW |
15 |
94,459,476 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3973:Irak4
|
UTSW |
15 |
94,452,621 (GRCm39) |
missense |
possibly damaging |
0.73 |
|
R4687:Irak4
|
UTSW |
15 |
94,464,704 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4704:Irak4
|
UTSW |
15 |
94,464,781 (GRCm39) |
splice site |
probably null |
|
|
R5001:Irak4
|
UTSW |
15 |
94,456,154 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R5392:Irak4
|
UTSW |
15 |
94,454,566 (GRCm39) |
missense |
probably benign |
0.39 |
|
R5392:Irak4
|
UTSW |
15 |
94,454,565 (GRCm39) |
missense |
probably benign |
|
|
R6280:Irak4
|
UTSW |
15 |
94,449,691 (GRCm39) |
nonsense |
probably null |
|
|
R6390:Irak4
|
UTSW |
15 |
94,459,367 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7643:Irak4
|
UTSW |
15 |
94,456,709 (GRCm39) |
missense |
probably benign |
0.05 |
|
R8209:Irak4
|
UTSW |
15 |
94,456,244 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8222:Irak4
|
UTSW |
15 |
94,459,110 (GRCm39) |
splice site |
probably null |
|
|
R8226:Irak4
|
UTSW |
15 |
94,456,244 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8512:Irak4
|
UTSW |
15 |
94,464,659 (GRCm39) |
missense |
probably benign |
|
|
R8678:Irak4
|
UTSW |
15 |
94,464,666 (GRCm39) |
missense |
probably benign |
0.06 |
|
R9259:Irak4
|
UTSW |
15 |
94,456,726 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9287:Irak4
|
UTSW |
15 |
94,460,917 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R9685:Irak4
|
UTSW |
15 |
94,451,812 (GRCm39) |
missense |
probably benign |
0.22 |
|
V8831:Irak4
|
UTSW |
15 |
94,459,365 (GRCm39) |
missense |
probably damaging |
1.00 |
|
X0019:Irak4
|
UTSW |
15 |
94,451,881 (GRCm39) |
missense |
probably benign |
0.00 |
|
X0027:Irak4
|
UTSW |
15 |
94,449,811 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Posted On |
2014-05-07 |
Incidental Mutation