Incidental Mutation 'IGL01911:Cdyl'
ID 179820
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Cdyl
Ensembl Gene ENSMUSG00000059288
Gene Name chromodomain protein, Y chromosome-like
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.420) question?
Stock # IGL01911
Quality Score
Chromosome 13
Chromosomal Location 35659833-35874063 bp(+) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) T to C at 35863243 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Valine to Alanine at position 389 (V389A)
Ref Sequence ENSEMBL: ENSMUSP00000131784 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000075220] [ENSMUST00000163595]
AlphaFold Q9WTK2
Predicted Effect probably benign
Transcript: ENSMUST00000075220
AA Change: V438A

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)
SMART Domains Protein: ENSMUSP00000074707
Gene: ENSMUSG00000059288
AA Change: V438A

CHROMO 55 109 2.06e-18 SMART
low complexity region 116 129 N/A INTRINSIC
Pfam:ECH_1 342 593 1.8e-35 PFAM
Pfam:ECH_2 348 592 6e-17 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000163595
AA Change: V389A

PolyPhen 2 Score 0.972 (Sensitivity: 0.77; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000131784
Gene: ENSMUSG00000059288
AA Change: V389A

CHROMO 6 60 1.58e-19 SMART
low complexity region 67 80 N/A INTRINSIC
Pfam:ECH 291 539 4e-38 PFAM
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Chromodomain Y is a primate-specific Y-chromosomal gene family expressed exclusively in the testis and implicated in infertility. Although the Y-linked genes are testis-specific, this autosomal gene is ubiquitously expressed. The Y-linked genes arose by retrotransposition of an mRNA from this gene, followed by amplification of the retroposed gene. Proteins encoded by this gene superfamily possess a chromodomain, a motif implicated in chromatin binding and gene suppression, and a catalytic domain believed to be involved in histone acetylation. Multiple proteins are encoded by transcript variants of this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Conditional homozygous knockout in the cerebral cortex affects neuronal migration and results in increased susceptibility to pharmacologically induced seizures. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 32 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
A830010M20Rik A G 5: 107,508,580 H903R probably damaging Het
Aox3 T C 1: 58,152,560 F424L probably benign Het
Arhgap11a T C 2: 113,840,732 T301A probably damaging Het
Atp9a C A 2: 168,653,561 R575L probably damaging Het
Brca2 G A 5: 150,567,613 D3088N probably damaging Het
Brd3 G A 2: 27,459,800 T247I probably damaging Het
Cacna1i A G 15: 80,391,732 N1908S probably benign Het
Ccdc40 A T 11: 119,231,971 probably null Het
Col28a1 A G 6: 8,014,963 F814S probably damaging Het
Cstf3 T C 2: 104,646,631 F149S probably damaging Het
Dglucy T C 12: 100,838,525 Y122H probably damaging Het
Dram1 T C 10: 88,325,341 D222G probably damaging Het
Ets2 G A 16: 95,711,758 R96H probably damaging Het
Gm11563 T A 11: 99,658,701 R76* probably null Het
Gm17093 A C 14: 44,520,820 probably benign Het
Gm21738 G A 14: 19,416,979 S144L probably benign Het
Gpi1 A T 7: 34,220,922 V136D probably damaging Het
Hfm1 G A 5: 106,911,544 T204M possibly damaging Het
Itgae T C 11: 73,116,137 I403T probably damaging Het
Krt75 A T 15: 101,568,102 D409E probably damaging Het
Limk2 T G 11: 3,355,340 T76P probably benign Het
Mtus2 A T 5: 148,078,220 M608L probably benign Het
Obscn C A 11: 59,008,595 E979* probably null Het
Olfr598 T G 7: 103,329,273 F262L probably benign Het
P2rx7 C T 5: 122,658,768 A166V probably damaging Het
Pomgnt2 T C 9: 121,982,788 E309G probably benign Het
Pqlc2 A G 4: 139,301,073 V186A probably benign Het
Sbno2 A T 10: 80,069,624 Y199* probably null Het
Setd2 C A 9: 110,617,431 probably null Het
Vmn2r84 T A 10: 130,386,408 I648F probably damaging Het
Vrtn C T 12: 84,650,206 R577W probably benign Het
Znhit6 A G 3: 145,578,098 probably benign Het
Other mutations in Cdyl
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00981:Cdyl APN 13 35816113 missense probably damaging 0.98
IGL01547:Cdyl APN 13 35790162 missense possibly damaging 0.90
IGL02584:Cdyl APN 13 35683786 missense probably benign
IGL02754:Cdyl APN 13 35683742 splice site probably benign
R1630:Cdyl UTSW 13 35683803 missense possibly damaging 0.66
R1678:Cdyl UTSW 13 35856889 missense probably damaging 0.99
R1802:Cdyl UTSW 13 35872636 nonsense probably null
R4435:Cdyl UTSW 13 35858250 critical splice donor site probably null
R5841:Cdyl UTSW 13 35872561 missense probably damaging 1.00
R5860:Cdyl UTSW 13 35858083 missense possibly damaging 0.73
R6430:Cdyl UTSW 13 35871606 missense possibly damaging 0.74
R7127:Cdyl UTSW 13 35856668 missense probably benign 0.01
R7296:Cdyl UTSW 13 35863395 missense probably damaging 1.00
R7369:Cdyl UTSW 13 35816009 missense probably damaging 1.00
R7422:Cdyl UTSW 13 35858194 missense possibly damaging 0.90
R7635:Cdyl UTSW 13 35871651 missense probably damaging 1.00
R7756:Cdyl UTSW 13 35872641 missense probably damaging 1.00
R7758:Cdyl UTSW 13 35872641 missense probably damaging 1.00
R7764:Cdyl UTSW 13 35816143 missense possibly damaging 0.92
R8221:Cdyl UTSW 13 35816164 missense probably benign 0.00
R8820:Cdyl UTSW 13 35858191 missense probably damaging 1.00
R9277:Cdyl UTSW 13 35858239 missense probably benign
R9550:Cdyl UTSW 13 35816164 missense probably benign 0.00
Z1176:Cdyl UTSW 13 35815966 missense probably damaging 1.00
Z1177:Cdyl UTSW 13 35816070 missense probably benign 0.21
Posted On 2014-05-07