Incidental Mutation 'IGL01960:Arfgap3'
ID182355
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Arfgap3
Ensembl Gene ENSMUSG00000054277
Gene NameADP-ribosylation factor GTPase activating protein 3
Synonyms1810004P07Rik, 0610009H19Rik, 1810035F16Rik, 9130416J18Rik
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.199) question?
Stock #IGL01960
Quality Score
Status
Chromosome15
Chromosomal Location83299739-83350247 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to C at 83313557 bp
ZygosityHeterozygous
Amino Acid Change Threonine to Alanine at position 333 (T333A)
Ref Sequence ENSEMBL: ENSMUSP00000064893 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000067215] [ENSMUST00000226124]
Predicted Effect probably benign
Transcript: ENSMUST00000067215
AA Change: T333A

PolyPhen 2 Score 0.044 (Sensitivity: 0.94; Specificity: 0.83)
SMART Domains Protein: ENSMUSP00000064893
Gene: ENSMUSG00000054277
AA Change: T333A

DomainStartEndE-ValueType
ArfGap 10 126 7.18e-44 SMART
Blast:ArfGap 160 200 2e-6 BLAST
low complexity region 220 237 N/A INTRINSIC
low complexity region 348 362 N/A INTRINSIC
low complexity region 459 466 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000226124
AA Change: T333A

PolyPhen 2 Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a GTPase-activating protein (GAP) that associates with the Golgi apparatus and regulates the early secretory pathway of proteins. The encoded protein promotes hydrolysis of ADP-ribosylation factor 1 (ARF1)-bound GTP, which is required for the dissociation of coat proteins from Golgi-derived membranes and vesicles. Dissociation of the coat proteins is a prerequisite for the fusion of these vesicles with target compartments. The activity of this protein is sensitive to phospholipids. Multiple transcript variants encoding different isoforms have been found for this gene. This gene was originally known as ARFGAP1, but that is now the name of a related but different gene. [provided by RefSeq, Nov 2008]
Allele List at MGI
Other mutations in this stock
Total: 56 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adgrb2 G A 4: 130,012,384 probably benign Het
Adh7 T C 3: 138,226,282 I219T probably damaging Het
Ankmy1 C A 1: 92,871,663 probably benign Het
Aoc1 A G 6: 48,908,603 I681V probably benign Het
Cdc42ep4 A G 11: 113,729,004 V187A probably benign Het
Cyp4f40 G A 17: 32,659,561 G26R probably benign Het
Dnah7b T A 1: 46,124,337 probably benign Het
Dnajb4 T C 3: 152,186,539 E219G probably damaging Het
Dnmt3b A G 2: 153,676,711 K578R possibly damaging Het
Dst A T 1: 34,290,489 D4649V probably damaging Het
Fam20c T C 5: 138,806,320 S391P probably damaging Het
Fbxw10 A T 11: 62,876,756 Y801F probably damaging Het
Frem2 T G 3: 53,522,304 E2775A probably benign Het
Frmd4b A T 6: 97,295,780 S830T possibly damaging Het
Gatad2a T G 8: 69,909,948 S581R possibly damaging Het
Gpcpd1 C T 2: 132,539,898 probably null Het
Igsf10 A G 3: 59,318,737 L2505P probably benign Het
Igsf9b A G 9: 27,328,606 D649G possibly damaging Het
Impact T C 18: 12,974,758 C28R probably benign Het
Ino80d G T 1: 63,058,147 Q863K probably damaging Het
Iqsec1 A C 6: 90,676,780 M675R probably damaging Het
Kcng3 C T 17: 83,587,850 V396I probably damaging Het
Klhl18 A T 9: 110,450,746 D60E probably benign Het
Krtap7-1 C T 16: 89,508,268 probably benign Het
Mal2 T A 15: 54,598,545 Y145* probably null Het
Mcpt8 A T 14: 56,082,407 probably null Het
Mdn1 A G 4: 32,758,393 D4810G probably benign Het
Med24 T C 11: 98,707,542 I766V probably benign Het
Mga G A 2: 119,938,657 V1477M probably damaging Het
Mybph T A 1: 134,193,925 V112E probably benign Het
Nmur2 A T 11: 56,040,511 S125T probably damaging Het
Olfr322 T C 11: 58,665,865 V102A probably benign Het
Olfr805 A G 10: 129,722,887 I219T probably damaging Het
Olfr907 A T 9: 38,498,707 I13F probably damaging Het
Otop3 A G 11: 115,340,969 N220S probably damaging Het
Pacsin1 T G 17: 27,704,835 probably null Het
Pcsk1 A G 13: 75,093,167 R89G possibly damaging Het
Pde2a A T 7: 101,504,740 E509V probably benign Het
Pex1 T C 5: 3,627,588 probably benign Het
Ppp4r4 T G 12: 103,581,494 probably benign Het
Pygb T A 2: 150,813,483 N251K probably benign Het
Rsf1 C T 7: 97,661,575 T504I probably benign Het
Slc5a11 A T 7: 123,269,940 T584S probably benign Het
Smad2 G A 18: 76,262,484 probably benign Het
Srsf6 G A 2: 162,933,754 R161H probably damaging Het
Tbx3 T A 5: 119,682,643 S573T probably benign Het
Tecpr1 C T 5: 144,216,919 R172Q probably benign Het
Ttn T A 2: 76,788,900 probably null Het
Ubr2 T C 17: 46,973,967 M542V probably benign Het
Unc80 T C 1: 66,608,500 probably benign Het
Vmn1r222 T A 13: 23,232,145 K299N probably benign Het
Wwp1 A T 4: 19,662,115 probably benign Het
Zbtb46 T A 2: 181,424,135 H74L possibly damaging Het
Zfp106 A G 2: 120,539,322 L73S probably benign Het
Zfp106 A T 2: 120,524,043 L1416I probably damaging Het
Zfp667 G A 7: 6,305,337 G335R probably benign Het
Other mutations in Arfgap3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00908:Arfgap3 APN 15 83322589 missense probably benign 0.04
IGL01306:Arfgap3 APN 15 83313509 missense possibly damaging 0.78
IGL03029:Arfgap3 APN 15 83322650 missense probably damaging 1.00
IGL03036:Arfgap3 APN 15 83306926 missense possibly damaging 0.91
IGL03328:Arfgap3 APN 15 83343081 missense probably damaging 1.00
ANU23:Arfgap3 UTSW 15 83313509 missense possibly damaging 0.78
R0103:Arfgap3 UTSW 15 83322721 splice site probably benign
R0103:Arfgap3 UTSW 15 83322721 splice site probably benign
R0125:Arfgap3 UTSW 15 83343139 missense probably benign 0.01
R0243:Arfgap3 UTSW 15 83330513 splice site probably benign
R0551:Arfgap3 UTSW 15 83343137 missense probably damaging 1.00
R0557:Arfgap3 UTSW 15 83303185 missense probably damaging 1.00
R0638:Arfgap3 UTSW 15 83308188 splice site probably null
R1115:Arfgap3 UTSW 15 83330540 missense probably benign 0.00
R1459:Arfgap3 UTSW 15 83306937 missense probably benign 0.15
R1576:Arfgap3 UTSW 15 83313563 missense possibly damaging 0.94
R1776:Arfgap3 UTSW 15 83343139 missense probably benign 0.01
R1826:Arfgap3 UTSW 15 83303102 critical splice donor site probably null
R2057:Arfgap3 UTSW 15 83310300 missense probably benign
R2084:Arfgap3 UTSW 15 83334566 missense probably damaging 0.96
R3407:Arfgap3 UTSW 15 83322607 missense probably benign 0.00
R4072:Arfgap3 UTSW 15 83303129 missense probably damaging 1.00
R4074:Arfgap3 UTSW 15 83303129 missense probably damaging 1.00
R4206:Arfgap3 UTSW 15 83322668 missense probably benign
R4449:Arfgap3 UTSW 15 83334558 missense probably damaging 1.00
R5004:Arfgap3 UTSW 15 83310296 missense possibly damaging 0.87
R5193:Arfgap3 UTSW 15 83332697 missense probably benign 0.01
R5364:Arfgap3 UTSW 15 83314361 missense probably damaging 1.00
R6142:Arfgap3 UTSW 15 83350127 missense probably damaging 1.00
R6813:Arfgap3 UTSW 15 83330593 missense probably benign 0.00
R7154:Arfgap3 UTSW 15 83336704 missense probably damaging 1.00
R7422:Arfgap3 UTSW 15 83306949 missense probably damaging 0.97
R7582:Arfgap3 UTSW 15 83303101 missense possibly damaging 0.77
R7714:Arfgap3 UTSW 15 83308151 missense probably benign 0.34
Posted On2014-05-07