Incidental Mutation 'IGL01996:Nudcd1'
ID 182889
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Nudcd1
Ensembl Gene ENSMUSG00000038736
Gene Name NudC domain containing 1
Synonyms 4921532K09Rik
Accession Numbers
Essential gene? Probably essential (E-score: 0.854) question?
Stock # IGL01996
Quality Score
Status
Chromosome 15
Chromosomal Location 44373163-44428307 bp(-) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) A to T at 44405961 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Phenylalanine to Tyrosine at position 101 (F101Y)
Ref Sequence ENSEMBL: ENSMUSP00000042746 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000038719] [ENSMUST00000226606] [ENSMUST00000227843]
AlphaFold Q6PIP5
Predicted Effect probably benign
Transcript: ENSMUST00000038719
AA Change: F101Y

PolyPhen 2 Score 0.408 (Sensitivity: 0.89; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000042746
Gene: ENSMUSG00000038736
AA Change: F101Y

DomainStartEndE-ValueType
Pfam:CS 275 349 1.4e-18 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000226606
Predicted Effect noncoding transcript
Transcript: ENSMUST00000227645
Predicted Effect probably benign
Transcript: ENSMUST00000227843
AA Change: F101Y

PolyPhen 2 Score 0.147 (Sensitivity: 0.92; Specificity: 0.87)
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 52 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
3110009E18Rik T C 1: 120,150,700 V29A possibly damaging Het
Adarb1 A G 10: 77,322,217 L132P probably damaging Het
Afg3l1 T G 8: 123,501,894 M733R probably damaging Het
Aox1 C T 1: 58,082,066 R899C probably benign Het
Arhgap44 T A 11: 65,005,496 probably benign Het
Asns T C 6: 7,682,378 D189G possibly damaging Het
Brap A G 5: 121,678,847 probably benign Het
Ccdc138 T A 10: 58,562,030 L564H probably damaging Het
Ccdc167 A G 17: 29,705,487 probably null Het
Ccdc178 A G 18: 22,097,756 Y353H probably damaging Het
Clca3b A T 3: 144,849,163 S41R probably benign Het
Dpep3 T C 8: 105,974,726 N397S probably damaging Het
Eif1 T C 11: 100,321,000 I83T probably benign Het
Enah A T 1: 181,956,505 W80R unknown Het
F2rl1 C T 13: 95,513,924 C150Y probably damaging Het
Fbxw24 T C 9: 109,605,372 R387G possibly damaging Het
Fsd1l A G 4: 53,647,760 T68A probably benign Het
Greb1 T C 12: 16,690,845 K1412R possibly damaging Het
Grin2b T C 6: 135,732,586 S1321G probably damaging Het
Hist1h4j G A 13: 21,735,138 G15S unknown Het
Itgb7 C T 15: 102,217,977 G508D probably damaging Het
Kcnq3 A G 15: 66,023,696 I333T probably damaging Het
Knl1 A G 2: 119,104,061 D2115G probably damaging Het
Lmtk3 G A 7: 45,793,447 probably null Het
Lrpprc A G 17: 84,773,270 Y176H probably benign Het
Mier1 T C 4: 103,127,276 S22P possibly damaging Het
Mme A T 3: 63,343,549 N337I probably benign Het
Mthfd1 A G 12: 76,303,905 Y687C probably damaging Het
Nrp2 T C 1: 62,749,260 M373T probably damaging Het
Nup133 T A 8: 123,946,595 I66L probably benign Het
Olfr1406 T C 1: 173,183,727 T236A probably benign Het
Olfr378 T A 11: 73,425,968 N5I probably damaging Het
Olfr736 T G 14: 50,393,659 M301R probably damaging Het
Osbpl5 A G 7: 143,707,344 probably null Het
Paqr8 T C 1: 20,935,404 F261L probably damaging Het
Plxna2 A G 1: 194,799,776 E1452G probably damaging Het
Polh T C 17: 46,173,001 D446G probably benign Het
Psg19 A T 7: 18,790,061 M353K possibly damaging Het
Sap25 T C 5: 137,641,818 probably null Het
Sap30l C T 11: 57,809,951 R144* probably null Het
Sema6b C T 17: 56,131,157 V144M probably damaging Het
Sfmbt2 T C 2: 10,440,026 Y228H probably benign Het
Shank2 A G 7: 144,411,493 D946G probably damaging Het
Slc11a1 T A 1: 74,376,806 L52Q possibly damaging Het
Sptlc3 T C 2: 139,581,504 probably benign Het
Tgfb1i1 T C 7: 128,249,292 probably benign Het
Tifa T C 3: 127,796,580 probably benign Het
Tomm40l C T 1: 171,219,655 V265M possibly damaging Het
Trim45 C A 3: 100,928,109 Y469* probably null Het
Ttc21a G T 9: 119,958,116 A730S probably damaging Het
Vmn1r18 A T 6: 57,390,016 D184E possibly damaging Het
Vmn2r120 A T 17: 57,525,222 I189N possibly damaging Het
Other mutations in Nudcd1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01024:Nudcd1 APN 15 44420826 missense probably benign 0.03
IGL01956:Nudcd1 APN 15 44400216 missense probably damaging 1.00
R0333:Nudcd1 UTSW 15 44401287 missense probably benign
R0960:Nudcd1 UTSW 15 44427651 unclassified probably benign
R3409:Nudcd1 UTSW 15 44420811 missense probably benign 0.17
R3410:Nudcd1 UTSW 15 44420811 missense probably benign 0.17
R4771:Nudcd1 UTSW 15 44405482 missense probably damaging 0.98
R4970:Nudcd1 UTSW 15 44376643 nonsense probably null
R5112:Nudcd1 UTSW 15 44376643 nonsense probably null
R5789:Nudcd1 UTSW 15 44388483 nonsense probably null
R6353:Nudcd1 UTSW 15 44420762 missense probably damaging 1.00
R7045:Nudcd1 UTSW 15 44405830 missense probably benign 0.00
R7483:Nudcd1 UTSW 15 44405857 missense possibly damaging 0.89
R7742:Nudcd1 UTSW 15 44405358 missense probably benign 0.06
R8949:Nudcd1 UTSW 15 44388575 missense probably benign 0.00
R9066:Nudcd1 UTSW 15 44380192 missense probably damaging 1.00
R9201:Nudcd1 UTSW 15 44400077 missense probably benign 0.00
R9438:Nudcd1 UTSW 15 44405925 missense probably benign 0.15
Z1177:Nudcd1 UTSW 15 44405432 missense probably benign 0.01
Posted On 2014-05-07