Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02008:Wdr3'

183257

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Wdr3

Ensembl Gene

ENSMUSG00000033285

Gene Name

WD repeat domain 3

Synonyms

D030020G18Rik

Accession Numbers

Essential gene?

Probably essential (E-score: 0.955) question?

Stock #

IGL02008

Quality Score

Status

Chromosome

Chromosomal Location

100045496-100069723 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 100058298 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 436 (S436P)

Ref Sequence

ENSEMBL: ENSMUSP00000060613 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000052120]

AlphaFold

Q8BHB4

Predicted Effect

probably damaging
Transcript: ENSMUST00000052120
AA Change: S436P

PolyPhen 2 Score 0.970 (Sensitivity: 0.77; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000060613
Gene: ENSMUSG00000033285
AA Change: S436P

Domain	Start	End	E-Value	Type
Blast:WD40	12	51	3e-16	BLAST
WD40	54	93	3.14e-6	SMART
WD40	96	135	1.04e-6	SMART
WD40	138	177	1.15e-4	SMART
WD40	180	219	4.24e-3	SMART
low complexity region	225	239	N/A	INTRINSIC
Blast:WD40	267	307	3e-18	BLAST
low complexity region	316	331	N/A	INTRINSIC
WD40	403	441	8.49e-3	SMART
WD40	444	481	1.71e1	SMART
WD40	484	523	2.1e-7	SMART
WD40	538	576	1.2e-2	SMART
WD40	579	618	2.45e-8	SMART
WD40	621	660	5.47e-6	SMART
WD40	663	702	1.03e-10	SMART
low complexity region	711	724	N/A	INTRINSIC
Pfam:Utp12	803	906	6.4e-25	PFAM
low complexity region	927	936	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146989

SMART Domains

Protein: ENSMUSP00000134945
Gene: ENSMUSG00000033285

Domain	Start	End	E-Value	Type
Blast:WD40	12	51	1e-18	BLAST

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a nuclear protein containing 10 WD repeats. WD repeats are approximately 30- to 40-amino acid domains containing several conserved residues, which usually include a trp-asp at the C-terminal end. Proteins belonging to the WD repeat family are involved in a variety of cellular processes, including cell cycle progression, signal transduction, apoptosis, and gene regulation. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca4	A	G	3: 121,969,750 (GRCm39)	T2252A	probably benign	Het
Abcc2	C	T	19: 43,810,189 (GRCm39)		probably benign	Het
Abcf1	T	C	17: 36,272,954 (GRCm39)	E231G	probably benign	Het
Astn2	T	C	4: 65,977,390 (GRCm39)	Y379C	probably damaging	Het
Atp8b1	G	T	18: 64,671,766 (GRCm39)		probably benign	Het
Atr	T	A	9: 95,763,473 (GRCm39)		probably benign	Het
Bdp1	A	G	13: 100,160,335 (GRCm39)	S2349P	possibly damaging	Het
Bmp2	T	C	2: 133,402,886 (GRCm39)	S146P	probably damaging	Het
Cacna1c	T	C	6: 118,692,885 (GRCm39)	S218G	probably null	Het
Cand2	T	C	6: 115,780,599 (GRCm39)	V1161A	probably damaging	Het
Clec16a	T	C	16: 10,398,824 (GRCm39)	V330A	probably damaging	Het
Cpsf1	A	T	15: 76,487,291 (GRCm39)	V161D	probably damaging	Het
Ctsh	A	G	9: 89,943,600 (GRCm39)	Y75C	probably damaging	Het
Cyp26c1	C	A	19: 37,677,371 (GRCm39)	L267M	probably damaging	Het
Cyp26c1	T	A	19: 37,677,372 (GRCm39)	L267Q	probably damaging	Het
Cyp2c50	G	A	19: 40,079,543 (GRCm39)	W212*	probably null	Het
Dnah5	T	A	15: 28,343,698 (GRCm39)	M2366K	probably damaging	Het
Ermp1	A	G	19: 29,590,320 (GRCm39)	M794T	probably damaging	Het
F11	G	T	8: 45,703,132 (GRCm39)	S186Y	probably damaging	Het
Fam184b	A	T	5: 45,690,165 (GRCm39)	F815I	possibly damaging	Het
Fezf2	T	C	14: 12,343,705 (GRCm38)	I347V	probably benign	Het
Fip1l1	C	T	5: 74,706,084 (GRCm39)	T114I	possibly damaging	Het
Gbp7	A	C	3: 142,252,211 (GRCm39)	D598A	probably benign	Het
Gm1110	T	A	9: 26,794,526 (GRCm39)	D500V	probably benign	Het
Gm3248	T	A	14: 5,943,928 (GRCm38)	M99L	probably benign	Het
Gpi-ps	A	T	8: 5,689,896 (GRCm39)		noncoding transcript	Het
Hspa9	G	A	18: 35,081,028 (GRCm39)	R218*	probably null	Het
Ikbip	G	A	10: 90,929,119 (GRCm39)		probably null	Het
Kcnb2	C	T	1: 15,781,033 (GRCm39)	T635M	probably benign	Het
Krtap29-1	T	A	11: 99,869,105 (GRCm39)	I259F	possibly damaging	Het
Lnpep	T	C	17: 17,791,219 (GRCm39)	T442A	probably benign	Het
Mgat1	T	A	11: 49,151,562 (GRCm39)	I15N	probably damaging	Het
Nlrp9c	A	T	7: 26,084,576 (GRCm39)	S334R	probably benign	Het
Notch2	A	T	3: 98,054,612 (GRCm39)	D2425V	probably damaging	Het
Ntn1	C	T	11: 68,104,089 (GRCm39)	V520M	probably damaging	Het
Or10d1b	A	G	9: 39,613,549 (GRCm39)	V172A	probably damaging	Het
Or4p18	T	A	2: 88,232,421 (GRCm39)	T286S	possibly damaging	Het
Or5d39	A	T	2: 87,979,922 (GRCm39)	V147E	probably damaging	Het
Or6c3b	T	A	10: 129,527,887 (GRCm39)	T8S	probably benign	Het
Or8g55	A	T	9: 39,784,781 (GRCm39)	D70V	probably damaging	Het
Or8k39	A	C	2: 86,563,521 (GRCm39)	I145R	possibly damaging	Het
Osr2	A	G	15: 35,302,138 (GRCm39)	H246R	probably damaging	Het
Papolg	T	C	11: 23,829,898 (GRCm39)	R224G	probably damaging	Het
Pax6	T	A	2: 105,522,623 (GRCm39)		probably null	Het
Pcyox1	A	G	6: 86,369,250 (GRCm39)	V192A	probably benign	Het
Phf1	C	T	17: 27,154,260 (GRCm39)	A159V	possibly damaging	Het
Ppfia4	G	A	1: 134,260,129 (GRCm39)	R45W	probably damaging	Het
Psmb9	T	A	17: 34,402,653 (GRCm39)	K109M	probably damaging	Het
Ptprt	T	A	2: 161,769,593 (GRCm39)	Y424F	probably benign	Het
Ptrh2	A	G	11: 86,580,592 (GRCm39)	I70V	probably benign	Het
Rnf213	G	A	11: 119,309,135 (GRCm39)		probably benign	Het
Rom1	T	A	19: 8,905,368 (GRCm39)	I271F	probably benign	Het
Satb2	T	A	1: 56,835,952 (GRCm39)	D731V	possibly damaging	Het
Serpinb7	G	T	1: 107,375,859 (GRCm39)	G159V	possibly damaging	Het
Slit1	T	C	19: 41,634,579 (GRCm39)	I393V	probably damaging	Het
Spata20	T	A	11: 94,374,289 (GRCm39)	D327V	probably damaging	Het
Spata31e3	G	A	13: 50,400,721 (GRCm39)	P535L	probably benign	Het
Spmap2l	A	T	5: 77,208,605 (GRCm39)	I378L	probably benign	Het
Tbc1d32	G	T	10: 56,027,871 (GRCm39)	Q744K	possibly damaging	Het
Tmem108	G	T	9: 103,366,439 (GRCm39)	N517K	possibly damaging	Het
Trp63	T	A	16: 25,681,211 (GRCm39)	N160K	probably damaging	Het
Ttll5	T	C	12: 85,980,385 (GRCm39)	S119P	probably damaging	Het
Ubqln3	T	A	7: 103,791,523 (GRCm39)	Q189L	probably damaging	Het
Vwa5a	G	A	9: 38,649,072 (GRCm39)	R638H	probably benign	Het
Zfp975	A	T	7: 42,312,215 (GRCm39)	C133S	probably damaging	Het
Zfp976	A	T	7: 42,263,656 (GRCm39)		probably benign	Het
Zmiz1	A	G	14: 25,657,303 (GRCm39)	M860V	probably damaging	Het
Zscan4d	T	C	7: 10,896,296 (GRCm39)	E358G	probably benign	Het

Other mutations in Wdr3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00420:Wdr3	APN	3	100,055,424 (GRCm39)	missense	probably damaging	1.00
IGL00706:Wdr3	APN	3	100,055,416 (GRCm39)	unclassified	probably benign
IGL01391:Wdr3	APN	3	100,054,105 (GRCm39)	unclassified	probably benign
IGL02136:Wdr3	APN	3	100,046,041 (GRCm39)	nonsense	probably null
IGL02215:Wdr3	APN	3	100,054,016 (GRCm39)	critical splice donor site	probably null
IGL02505:Wdr3	APN	3	100,059,290 (GRCm39)	missense	probably benign
IGL03412:Wdr3	APN	3	100,059,293 (GRCm39)	missense	probably benign	0.00
R0241:Wdr3	UTSW	3	100,052,973 (GRCm39)	missense	probably damaging	1.00
R0241:Wdr3	UTSW	3	100,052,973 (GRCm39)	missense	probably damaging	1.00
R0369:Wdr3	UTSW	3	100,063,734 (GRCm39)	nonsense	probably null
R0865:Wdr3	UTSW	3	100,060,112 (GRCm39)	unclassified	probably benign
R0966:Wdr3	UTSW	3	100,068,385 (GRCm39)	missense	probably damaging	0.99
R1168:Wdr3	UTSW	3	100,049,535 (GRCm39)	missense	probably benign	0.11
R1612:Wdr3	UTSW	3	100,058,515 (GRCm39)	splice site	probably benign
R1768:Wdr3	UTSW	3	100,061,186 (GRCm39)	missense	probably benign
R2060:Wdr3	UTSW	3	100,067,213 (GRCm39)	splice site	probably null
R3793:Wdr3	UTSW	3	100,059,281 (GRCm39)	missense	probably benign	0.02
R3888:Wdr3	UTSW	3	100,061,222 (GRCm39)	missense	probably benign
R4410:Wdr3	UTSW	3	100,047,543 (GRCm39)	missense	probably benign
R4596:Wdr3	UTSW	3	100,060,183 (GRCm39)	missense	possibly damaging	0.95
R4609:Wdr3	UTSW	3	100,047,516 (GRCm39)	missense	probably damaging	1.00
R4817:Wdr3	UTSW	3	100,053,861 (GRCm39)	missense	possibly damaging	0.71
R5016:Wdr3	UTSW	3	100,048,936 (GRCm39)	intron	probably benign
R5024:Wdr3	UTSW	3	100,062,252 (GRCm39)	missense	probably benign
R5411:Wdr3	UTSW	3	100,050,300 (GRCm39)	missense	probably damaging	1.00
R5430:Wdr3	UTSW	3	100,064,643 (GRCm39)	missense	possibly damaging	0.88
R5902:Wdr3	UTSW	3	100,051,807 (GRCm39)	unclassified	probably benign
R6177:Wdr3	UTSW	3	100,068,468 (GRCm39)	missense	probably damaging	0.97
R6445:Wdr3	UTSW	3	100,063,719 (GRCm39)	missense	possibly damaging	0.65
R6516:Wdr3	UTSW	3	100,052,992 (GRCm39)	missense	probably damaging	1.00
R6624:Wdr3	UTSW	3	100,051,642 (GRCm39)	missense	probably damaging	1.00
R6747:Wdr3	UTSW	3	100,046,040 (GRCm39)	missense	probably damaging	1.00
R6813:Wdr3	UTSW	3	100,046,041 (GRCm39)	nonsense	probably null
R6899:Wdr3	UTSW	3	100,057,217 (GRCm39)	missense	possibly damaging	0.90
R7024:Wdr3	UTSW	3	100,062,313 (GRCm39)	missense	probably benign	0.00
R7509:Wdr3	UTSW	3	100,058,503 (GRCm39)	missense	probably benign	0.03
R8008:Wdr3	UTSW	3	100,062,252 (GRCm39)	missense	probably benign
R8062:Wdr3	UTSW	3	100,049,810 (GRCm39)	missense	probably benign
R8241:Wdr3	UTSW	3	100,057,259 (GRCm39)	missense	probably damaging	1.00
R8840:Wdr3	UTSW	3	100,057,253 (GRCm39)	missense	probably damaging	0.99
R8944:Wdr3	UTSW	3	100,057,259 (GRCm39)	missense	probably damaging	1.00
R9235:Wdr3	UTSW	3	100,054,023 (GRCm39)	missense	probably benign	0.18
R9314:Wdr3	UTSW	3	100,050,288 (GRCm39)	missense	probably benign	0.00
R9544:Wdr3	UTSW	3	100,050,752 (GRCm39)	nonsense	probably null
X0012:Wdr3	UTSW	3	100,052,946 (GRCm39)	splice site	probably null
Z1088:Wdr3	UTSW	3	100,051,660 (GRCm39)	missense	probably benign	0.00

Posted On

2014-05-07