Incidental Mutation 'IGL02010:Rtf1'
ID 183348
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Rtf1
Ensembl Gene ENSMUSG00000027304
Gene Name RTF1, Paf1/RNA polymerase II complex component
Synonyms Gtl7, 2900005O08Rik, 6530416A09Rik
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # IGL02010
Quality Score
Status
Chromosome 2
Chromosomal Location 119505549-119565888 bp(+) (GRCm39)
Type of Mutation critical splice donor site (1 bp from exon)
DNA Base Change (assembly) G to A at 119531747 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000028767 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000028767]
AlphaFold A2AQ19
Predicted Effect probably null
Transcript: ENSMUST00000028767
SMART Domains Protein: ENSMUSP00000028767
Gene: ENSMUSG00000027304

DomainStartEndE-ValueType
signal peptide 1 29 N/A INTRINSIC
low complexity region 97 108 N/A INTRINSIC
low complexity region 115 128 N/A INTRINSIC
low complexity region 138 182 N/A INTRINSIC
coiled coil region 228 309 N/A INTRINSIC
low complexity region 318 350 N/A INTRINSIC
Plus3 358 466 2.23e-56 SMART
coiled coil region 529 565 N/A INTRINSIC
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This locus may represent a gene involved in regulation of transcription elongation and chromatin remodeling, based on studies of similar proteins in other organisms. The encoded protein may bind single-stranded DNA. [provided by RefSeq, Sep 2010]
Allele List at MGI
Other mutations in this stock
Total: 56 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca6 T C 11: 110,110,442 (GRCm39) D569G probably benign Het
Abhd17b C T 19: 21,661,485 (GRCm39) T224I probably benign Het
Atf6b T A 17: 34,873,626 (GRCm39) S695R probably benign Het
Cdh6 A C 15: 13,034,276 (GRCm39) probably benign Het
Cep290 G T 10: 100,344,569 (GRCm39) C462F probably benign Het
Cep290 T C 10: 100,397,207 (GRCm39) S2156P probably benign Het
Cfap20dc A T 14: 8,578,384 (GRCm38) H119Q possibly damaging Het
Cit T C 5: 116,014,006 (GRCm39) F240L probably damaging Het
Col1a2 T A 6: 4,512,416 (GRCm39) probably null Het
Ctcf T A 8: 106,391,597 (GRCm39) H297Q probably damaging Het
Dhx29 T C 13: 113,103,168 (GRCm39) probably null Het
Dhx37 T G 5: 125,495,777 (GRCm39) T835P possibly damaging Het
Enc1 C T 13: 97,381,588 (GRCm39) L33F possibly damaging Het
Epyc T A 10: 97,485,563 (GRCm39) M1K probably null Het
F10 T C 8: 13,098,292 (GRCm39) I165T probably damaging Het
Fam124a T C 14: 62,824,728 (GRCm39) L74P probably damaging Het
Fam234b A G 6: 135,186,405 (GRCm39) S138G probably benign Het
Fam81a T C 9: 70,006,419 (GRCm39) K198E probably benign Het
Fbn2 T C 18: 58,170,794 (GRCm39) Y2199C probably damaging Het
Fign A C 2: 63,810,744 (GRCm39) S175R probably damaging Het
Grik1 T C 16: 87,848,396 (GRCm39) N124S possibly damaging Het
Hdac9 G T 12: 34,481,944 (GRCm39) L175M probably damaging Het
Hephl1 A C 9: 15,001,852 (GRCm39) Y163* probably null Het
Hes1 G A 16: 29,886,128 (GRCm39) G244D probably damaging Het
Hexb A G 13: 97,313,353 (GRCm39) L501P probably benign Het
Igkv5-43 T C 6: 69,752,936 (GRCm39) I49V probably benign Het
Ipo5 T C 14: 121,170,789 (GRCm39) S491P probably benign Het
Jakmip2 C T 18: 43,692,158 (GRCm39) probably null Het
Lrfn5 A G 12: 61,886,469 (GRCm39) T86A probably damaging Het
Lrp1b T C 2: 41,358,954 (GRCm39) T640A probably damaging Het
M6pr G T 6: 122,292,085 (GRCm39) R139L possibly damaging Het
Myl9 A T 2: 156,620,579 (GRCm39) N39Y probably damaging Het
Nlrp3 A G 11: 59,440,361 (GRCm39) D646G probably benign Het
Nlrp5 A T 7: 23,116,797 (GRCm39) M174L probably benign Het
Nnmt T A 9: 48,503,331 (GRCm39) I232F probably damaging Het
Nrg1 T C 8: 32,408,171 (GRCm39) T21A probably benign Het
Or5t15 C T 2: 86,681,541 (GRCm39) C167Y possibly damaging Het
Or6c65 A G 10: 129,604,136 (GRCm39) Y257C probably benign Het
Pcare T A 17: 72,056,459 (GRCm39) T1073S probably benign Het
Pcdh7 T G 5: 58,286,597 (GRCm39) N1224K probably benign Het
Pde4a T C 9: 21,114,850 (GRCm39) probably null Het
Pfkfb3 T C 2: 11,488,805 (GRCm39) T320A probably benign Het
Plekhm2 T C 4: 141,364,730 (GRCm39) probably benign Het
Rabgap1l C T 1: 160,299,641 (GRCm39) R584H probably damaging Het
Rnf157 T A 11: 116,287,052 (GRCm39) N57I probably damaging Het
Sap130 C A 18: 31,782,655 (GRCm39) R189S probably damaging Het
Slc34a1 T G 13: 24,003,025 (GRCm39) V225G probably benign Het
Smg1 T C 7: 117,785,369 (GRCm39) probably benign Het
Tecta G A 9: 42,248,489 (GRCm39) T1971I probably damaging Het
Tlcd5 A T 9: 43,022,859 (GRCm39) V165E probably damaging Het
Tmem263 T A 10: 84,950,274 (GRCm39) S22T probably benign Het
Tnrc18 A T 5: 142,773,049 (GRCm39) F410L unknown Het
Ttc27 T G 17: 75,087,906 (GRCm39) probably benign Het
Vmn1r45 A T 6: 89,910,668 (GRCm39) C101S probably damaging Het
Wdr17 T C 8: 55,112,738 (GRCm39) K781E probably damaging Het
Xkr6 C T 14: 64,056,653 (GRCm39) T188M probably benign Het
Other mutations in Rtf1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01548:Rtf1 APN 2 119,542,589 (GRCm39) missense probably benign 0.37
IGL02336:Rtf1 APN 2 119,559,226 (GRCm39) splice site probably benign
IGL03004:Rtf1 APN 2 119,531,754 (GRCm39) splice site probably benign
R0127:Rtf1 UTSW 2 119,557,224 (GRCm39) missense probably damaging 1.00
R0244:Rtf1 UTSW 2 119,563,358 (GRCm39) missense probably damaging 1.00
R1014:Rtf1 UTSW 2 119,550,727 (GRCm39) missense possibly damaging 0.83
R1387:Rtf1 UTSW 2 119,536,126 (GRCm39) critical splice donor site probably null
R1760:Rtf1 UTSW 2 119,558,889 (GRCm39) missense probably benign 0.01
R2114:Rtf1 UTSW 2 119,535,999 (GRCm39) missense probably benign 0.02
R2115:Rtf1 UTSW 2 119,535,999 (GRCm39) missense probably benign 0.02
R2117:Rtf1 UTSW 2 119,535,999 (GRCm39) missense probably benign 0.02
R2342:Rtf1 UTSW 2 119,542,598 (GRCm39) missense probably benign
R4552:Rtf1 UTSW 2 119,561,210 (GRCm39) missense probably benign 0.00
R4801:Rtf1 UTSW 2 119,505,709 (GRCm39) missense possibly damaging 0.94
R4802:Rtf1 UTSW 2 119,505,709 (GRCm39) missense possibly damaging 0.94
R4843:Rtf1 UTSW 2 119,536,017 (GRCm39) missense possibly damaging 0.68
R5539:Rtf1 UTSW 2 119,560,405 (GRCm39) missense possibly damaging 0.84
R6250:Rtf1 UTSW 2 119,505,658 (GRCm39) missense unknown
R6960:Rtf1 UTSW 2 119,541,559 (GRCm39) missense probably damaging 0.97
R7282:Rtf1 UTSW 2 119,505,580 (GRCm39) missense unknown
R8120:Rtf1 UTSW 2 119,531,602 (GRCm39) missense probably damaging 0.99
R8236:Rtf1 UTSW 2 119,531,695 (GRCm39) missense probably damaging 0.98
R8961:Rtf1 UTSW 2 119,557,377 (GRCm39) missense probably benign
R9718:Rtf1 UTSW 2 119,535,986 (GRCm39) missense possibly damaging 0.66
X0026:Rtf1 UTSW 2 119,557,269 (GRCm39) missense probably benign 0.10
Posted On 2014-05-07