Incidental Mutation 'IGL02017:Fam3c'
ID183789
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Fam3c
Ensembl Gene ENSMUSG00000029672
Gene Namefamily with sequence similarity 3, member C
SynonymsFam3c, D6Wsu176e
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.171) question?
Stock #IGL02017
Quality Score
Status
Chromosome6
Chromosomal Location22306520-22356243 bp(-) (GRCm38)
Type of Mutationstart codon destroyed
DNA Base Change (assembly) A to G at 22343277 bp
ZygosityHeterozygous
Amino Acid Change Methionine to Threonine at position 1 (M1T)
Ref Sequence ENSEMBL: ENSMUSP00000128855 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000081288] [ENSMUST00000163371] [ENSMUST00000163963] [ENSMUST00000165576] [ENSMUST00000168965]
Predicted Effect probably benign
Transcript: ENSMUST00000081288
SMART Domains Protein: ENSMUSP00000080040
Gene: ENSMUSG00000029672

DomainStartEndE-ValueType
PDB:2YOP|C 18 194 9e-45 PDB
Predicted Effect probably null
Transcript: ENSMUST00000163371
AA Change: M1T

PolyPhen 2 Score 0.663 (Sensitivity: 0.86; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000128855
Gene: ENSMUSG00000029672
AA Change: M1T

DomainStartEndE-ValueType
transmembrane domain 7 29 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000163963
AA Change: M21T

PolyPhen 2 Score 0.533 (Sensitivity: 0.88; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000127559
Gene: ENSMUSG00000029672
AA Change: M21T

DomainStartEndE-ValueType
transmembrane domain 21 43 N/A INTRINSIC
Pfam:ILEI 122 214 1.9e-31 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000165576
AA Change: M1T

PolyPhen 2 Score 0.533 (Sensitivity: 0.88; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000127709
Gene: ENSMUSG00000029672
AA Change: M1T

DomainStartEndE-ValueType
transmembrane domain 7 29 N/A INTRINSIC
PDB:2YOP|C 48 224 4e-44 PDB
Predicted Effect probably null
Transcript: ENSMUST00000168965
AA Change: M1T
SMART Domains Protein: ENSMUSP00000128135
Gene: ENSMUSG00000029672
AA Change: M1T

DomainStartEndE-ValueType
transmembrane domain 7 29 N/A INTRINSIC
PDB:2YOP|C 48 110 6e-10 PDB
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the family with sequence similarity 3 (FAM3) family and encodes a secreted protein with a GG domain. A change in expression of this protein has been noted in pancreatic cancer-derived cells. [provided by RefSeq, Mar 2010]
PHENOTYPE: Mice homozygous for a knock-out or gene trap allele exhibit normal skeletal phenotype. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 31 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam5 A T 8: 24,781,759 I544N probably benign Het
Ago2 T C 15: 73,126,517 T271A probably benign Het
Aox3 A C 1: 58,120,992 K111N probably damaging Het
Arhgap39 G A 15: 76,737,037 R455C probably damaging Het
Brcc3 A G X: 75,422,783 D67G possibly damaging Het
Crot T G 5: 8,970,046 probably benign Het
Dusp5 A G 19: 53,537,506 H193R probably damaging Het
Ect2 G A 3: 27,122,044 R644* probably null Het
Epn3 A G 11: 94,495,026 S190P probably benign Het
Fam69c A T 18: 84,736,825 D142V probably damaging Het
Kif4 A G X: 100,638,354 N197S probably benign Het
Krt2 T C 15: 101,816,504 N224D probably damaging Het
Lama1 A G 17: 67,764,725 H869R probably benign Het
Lrrc14 G T 15: 76,713,742 R224L probably damaging Het
Macf1 T C 4: 123,499,931 D864G probably damaging Het
Map3k11 C T 19: 5,697,623 S603F possibly damaging Het
Mxra7 A G 11: 116,811,921 probably null Het
Myo5b C A 18: 74,716,999 D1139E probably damaging Het
Nek9 T C 12: 85,329,923 Y228C probably damaging Het
Nxph1 T C 6: 9,247,743 I238T probably damaging Het
Olfr1502 T A 19: 13,862,231 V146E possibly damaging Het
Olfr199 A G 16: 59,215,947 L222P probably damaging Het
Olfr458 T C 6: 42,460,824 H65R probably benign Het
Pdpn A G 4: 143,270,570 probably benign Het
Plbd2 T C 5: 120,488,558 T329A probably damaging Het
Ptpn6 T C 6: 124,732,486 D8G probably damaging Het
Rad54l2 T C 9: 106,754,040 D16G possibly damaging Het
Slc43a3 A G 2: 84,938,241 E68G probably damaging Het
Snph G A 2: 151,600,982 R16C probably damaging Het
Ttn G A 2: 76,725,216 R28736* probably null Het
Vmn1r18 G A 6: 57,389,756 A271V probably benign Het
Other mutations in Fam3c
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00815:Fam3c APN 6 22318948 missense probably damaging 1.00
IGL01958:Fam3c APN 6 22318955 missense probably damaging 1.00
PIT4812001:Fam3c UTSW 6 22321370 missense probably damaging 1.00
R1829:Fam3c UTSW 6 22309437 missense probably damaging 1.00
R2024:Fam3c UTSW 6 22329593 missense probably benign 0.33
R2884:Fam3c UTSW 6 22329582 missense probably damaging 0.98
R5481:Fam3c UTSW 6 22321358 missense probably benign 0.30
R5662:Fam3c UTSW 6 22355062 intron probably benign
R5911:Fam3c UTSW 6 22328561 missense probably damaging 1.00
R5911:Fam3c UTSW 6 22339300 missense probably benign 0.00
R6575:Fam3c UTSW 6 22329608 missense probably damaging 1.00
R6687:Fam3c UTSW 6 22328670 missense probably benign 0.03
R6982:Fam3c UTSW 6 22322301 missense probably damaging 1.00
R7570:Fam3c UTSW 6 22326405 intron probably benign
R7777:Fam3c UTSW 6 22328574 missense probably benign 0.19
R7994:Fam3c UTSW 6 22308460 missense probably damaging 0.98
R8082:Fam3c UTSW 6 22343304 missense unknown
R8254:Fam3c UTSW 6 22328676 missense possibly damaging 0.88
Posted On2014-05-07