Incidental Mutation 'IGL02024:Ttc19'
ID |
184088 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Ttc19
|
Ensembl Gene |
ENSMUSG00000042298 |
Gene Name |
tetratricopeptide repeat domain 19 |
Synonyms |
2810460C24Rik, 2010204O13Rik |
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.199)
|
Stock # |
IGL02024
|
Quality Score |
|
Status
|
|
Chromosome |
11 |
Chromosomal Location |
62172256-62208611 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
G to T
at 62203939 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Arginine to Isoleucine
at position 300
(R300I)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000054367
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000018645]
[ENSMUST00000037575]
[ENSMUST00000050646]
[ENSMUST00000101066]
[ENSMUST00000101067]
[ENSMUST00000101075]
[ENSMUST00000155712]
[ENSMUST00000159315]
|
AlphaFold |
Q8CC21 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000018645
|
SMART Domains |
Protein: ENSMUSP00000018645 Gene: ENSMUSG00000018501
Domain | Start | End | E-Value | Type |
low complexity region
|
51 |
74 |
N/A |
INTRINSIC |
Pfam:GPS2_interact
|
150 |
239 |
1.4e-37 |
PFAM |
coiled coil region
|
302 |
329 |
N/A |
INTRINSIC |
low complexity region
|
349 |
366 |
N/A |
INTRINSIC |
SANT
|
437 |
485 |
2.76e-7 |
SMART |
coiled coil region
|
507 |
544 |
N/A |
INTRINSIC |
low complexity region
|
593 |
617 |
N/A |
INTRINSIC |
SANT
|
624 |
672 |
3.29e-14 |
SMART |
low complexity region
|
710 |
731 |
N/A |
INTRINSIC |
low complexity region
|
771 |
788 |
N/A |
INTRINSIC |
low complexity region
|
888 |
899 |
N/A |
INTRINSIC |
low complexity region
|
987 |
995 |
N/A |
INTRINSIC |
low complexity region
|
1002 |
1013 |
N/A |
INTRINSIC |
low complexity region
|
1036 |
1049 |
N/A |
INTRINSIC |
internal_repeat_2
|
1061 |
1298 |
1.62e-6 |
PROSPERO |
internal_repeat_2
|
1299 |
1515 |
1.62e-6 |
PROSPERO |
low complexity region
|
1516 |
1527 |
N/A |
INTRINSIC |
coiled coil region
|
1712 |
1749 |
N/A |
INTRINSIC |
low complexity region
|
1834 |
1848 |
N/A |
INTRINSIC |
low complexity region
|
1969 |
1980 |
N/A |
INTRINSIC |
low complexity region
|
2036 |
2055 |
N/A |
INTRINSIC |
PDB:3N00|B
|
2064 |
2084 |
4e-7 |
PDB |
low complexity region
|
2086 |
2101 |
N/A |
INTRINSIC |
low complexity region
|
2157 |
2168 |
N/A |
INTRINSIC |
PDB:2OVM|B
|
2267 |
2290 |
2e-8 |
PDB |
low complexity region
|
2311 |
2324 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000037575
|
SMART Domains |
Protein: ENSMUSP00000038900 Gene: ENSMUSG00000018501
Domain | Start | End | E-Value | Type |
low complexity region
|
28 |
41 |
N/A |
INTRINSIC |
low complexity region
|
461 |
472 |
N/A |
INTRINSIC |
coiled coil region
|
658 |
695 |
N/A |
INTRINSIC |
low complexity region
|
780 |
794 |
N/A |
INTRINSIC |
low complexity region
|
915 |
926 |
N/A |
INTRINSIC |
low complexity region
|
982 |
1001 |
N/A |
INTRINSIC |
PDB:3N00|B
|
1010 |
1030 |
2e-7 |
PDB |
low complexity region
|
1032 |
1047 |
N/A |
INTRINSIC |
low complexity region
|
1102 |
1113 |
N/A |
INTRINSIC |
PDB:2OVM|B
|
1212 |
1235 |
2e-8 |
PDB |
low complexity region
|
1256 |
1269 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000050646
AA Change: R300I
PolyPhen 2
Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)
|
SMART Domains |
Protein: ENSMUSP00000054367 Gene: ENSMUSG00000042298 AA Change: R300I
Domain | Start | End | E-Value | Type |
low complexity region
|
3 |
29 |
N/A |
INTRINSIC |
low complexity region
|
77 |
86 |
N/A |
INTRINSIC |
Blast:TPR
|
87 |
120 |
9e-6 |
BLAST |
Blast:TPR
|
128 |
160 |
1e-9 |
BLAST |
Pfam:TPR_12
|
216 |
301 |
1.1e-14 |
PFAM |
Pfam:TPR_10
|
226 |
267 |
2.4e-6 |
PFAM |
Pfam:TPR_10
|
307 |
339 |
5.4e-6 |
PFAM |
Pfam:TPR_2
|
308 |
339 |
8.2e-5 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000101066
|
SMART Domains |
Protein: ENSMUSP00000098627 Gene: ENSMUSG00000018501
Domain | Start | End | E-Value | Type |
low complexity region
|
51 |
74 |
N/A |
INTRINSIC |
coiled coil region
|
176 |
217 |
N/A |
INTRINSIC |
coiled coil region
|
302 |
329 |
N/A |
INTRINSIC |
low complexity region
|
349 |
366 |
N/A |
INTRINSIC |
SANT
|
437 |
485 |
2.76e-7 |
SMART |
coiled coil region
|
507 |
544 |
N/A |
INTRINSIC |
low complexity region
|
593 |
617 |
N/A |
INTRINSIC |
SANT
|
624 |
672 |
3.29e-14 |
SMART |
low complexity region
|
710 |
731 |
N/A |
INTRINSIC |
low complexity region
|
771 |
788 |
N/A |
INTRINSIC |
low complexity region
|
888 |
899 |
N/A |
INTRINSIC |
low complexity region
|
987 |
995 |
N/A |
INTRINSIC |
low complexity region
|
1002 |
1013 |
N/A |
INTRINSIC |
low complexity region
|
1036 |
1049 |
N/A |
INTRINSIC |
internal_repeat_2
|
1061 |
1298 |
1.62e-6 |
PROSPERO |
internal_repeat_2
|
1299 |
1515 |
1.62e-6 |
PROSPERO |
low complexity region
|
1516 |
1527 |
N/A |
INTRINSIC |
coiled coil region
|
1712 |
1749 |
N/A |
INTRINSIC |
low complexity region
|
1834 |
1848 |
N/A |
INTRINSIC |
low complexity region
|
1969 |
1980 |
N/A |
INTRINSIC |
low complexity region
|
2036 |
2055 |
N/A |
INTRINSIC |
PDB:3N00|B
|
2064 |
2084 |
4e-7 |
PDB |
low complexity region
|
2086 |
2101 |
N/A |
INTRINSIC |
low complexity region
|
2157 |
2168 |
N/A |
INTRINSIC |
PDB:2OVM|B
|
2267 |
2290 |
2e-8 |
PDB |
low complexity region
|
2311 |
2324 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000101067
|
SMART Domains |
Protein: ENSMUSP00000098628 Gene: ENSMUSG00000018501
Domain | Start | End | E-Value | Type |
low complexity region
|
51 |
74 |
N/A |
INTRINSIC |
coiled coil region
|
176 |
217 |
N/A |
INTRINSIC |
coiled coil region
|
302 |
329 |
N/A |
INTRINSIC |
low complexity region
|
349 |
366 |
N/A |
INTRINSIC |
SANT
|
437 |
485 |
2.76e-7 |
SMART |
coiled coil region
|
507 |
544 |
N/A |
INTRINSIC |
low complexity region
|
593 |
617 |
N/A |
INTRINSIC |
SANT
|
624 |
672 |
3.29e-14 |
SMART |
low complexity region
|
716 |
734 |
N/A |
INTRINSIC |
low complexity region
|
838 |
849 |
N/A |
INTRINSIC |
low complexity region
|
937 |
945 |
N/A |
INTRINSIC |
low complexity region
|
952 |
963 |
N/A |
INTRINSIC |
low complexity region
|
986 |
999 |
N/A |
INTRINSIC |
low complexity region
|
1448 |
1459 |
N/A |
INTRINSIC |
coiled coil region
|
1645 |
1682 |
N/A |
INTRINSIC |
low complexity region
|
1767 |
1781 |
N/A |
INTRINSIC |
low complexity region
|
1902 |
1913 |
N/A |
INTRINSIC |
low complexity region
|
1969 |
1988 |
N/A |
INTRINSIC |
PDB:3N00|B
|
1997 |
2017 |
4e-7 |
PDB |
low complexity region
|
2019 |
2034 |
N/A |
INTRINSIC |
low complexity region
|
2089 |
2100 |
N/A |
INTRINSIC |
PDB:2OVM|B
|
2199 |
2222 |
2e-8 |
PDB |
low complexity region
|
2243 |
2256 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000101075
AA Change: R287I
PolyPhen 2
Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)
|
SMART Domains |
Protein: ENSMUSP00000098636 Gene: ENSMUSG00000042298 AA Change: R287I
Domain | Start | End | E-Value | Type |
low complexity region
|
3 |
29 |
N/A |
INTRINSIC |
low complexity region
|
77 |
86 |
N/A |
INTRINSIC |
Blast:TPR
|
87 |
120 |
9e-6 |
BLAST |
Pfam:TPR_12
|
210 |
288 |
1.8e-14 |
PFAM |
Pfam:TPR_10
|
213 |
254 |
3.4e-6 |
PFAM |
Pfam:TPR_10
|
255 |
293 |
2e-3 |
PFAM |
Pfam:TPR_10
|
294 |
327 |
3.7e-5 |
PFAM |
Pfam:TPR_2
|
295 |
326 |
8e-5 |
PFAM |
Pfam:TPR_1
|
296 |
326 |
8.7e-5 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000154976
|
Predicted Effect |
unknown
Transcript: ENSMUST00000162385
AA Change: R179I
|
SMART Domains |
Protein: ENSMUSP00000125618 Gene: ENSMUSG00000042298 AA Change: R179I
Domain | Start | End | E-Value | Type |
Blast:TPR
|
8 |
40 |
4e-10 |
BLAST |
Pfam:TPR_12
|
97 |
181 |
6.3e-15 |
PFAM |
Pfam:TPR_10
|
106 |
147 |
2e-6 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000155712
|
SMART Domains |
Protein: ENSMUSP00000122654 Gene: ENSMUSG00000018501
Domain | Start | End | E-Value | Type |
low complexity region
|
26 |
47 |
N/A |
INTRINSIC |
low complexity region
|
87 |
104 |
N/A |
INTRINSIC |
low complexity region
|
204 |
215 |
N/A |
INTRINSIC |
low complexity region
|
303 |
311 |
N/A |
INTRINSIC |
low complexity region
|
318 |
329 |
N/A |
INTRINSIC |
low complexity region
|
352 |
365 |
N/A |
INTRINSIC |
low complexity region
|
785 |
796 |
N/A |
INTRINSIC |
coiled coil region
|
982 |
1019 |
N/A |
INTRINSIC |
low complexity region
|
1104 |
1118 |
N/A |
INTRINSIC |
low complexity region
|
1239 |
1250 |
N/A |
INTRINSIC |
low complexity region
|
1306 |
1325 |
N/A |
INTRINSIC |
PDB:3N00|B
|
1334 |
1354 |
3e-7 |
PDB |
low complexity region
|
1356 |
1371 |
N/A |
INTRINSIC |
low complexity region
|
1427 |
1438 |
N/A |
INTRINSIC |
PDB:2OVM|B
|
1537 |
1560 |
2e-8 |
PDB |
low complexity region
|
1581 |
1594 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000159315
|
SMART Domains |
Protein: ENSMUSP00000124175 Gene: ENSMUSG00000018501
Domain | Start | End | E-Value | Type |
PDB:2OVM|B
|
9 |
32 |
3e-9 |
PDB |
low complexity region
|
53 |
66 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000156740
|
SMART Domains |
Protein: ENSMUSP00000125458 Gene: ENSMUSG00000018501
Domain | Start | End | E-Value | Type |
low complexity region
|
18 |
31 |
N/A |
INTRINSIC |
low complexity region
|
451 |
462 |
N/A |
INTRINSIC |
coiled coil region
|
647 |
684 |
N/A |
INTRINSIC |
low complexity region
|
770 |
784 |
N/A |
INTRINSIC |
low complexity region
|
905 |
916 |
N/A |
INTRINSIC |
low complexity region
|
972 |
991 |
N/A |
INTRINSIC |
PDB:3N00|B
|
1000 |
1020 |
2e-7 |
PDB |
low complexity region
|
1022 |
1037 |
N/A |
INTRINSIC |
low complexity region
|
1092 |
1103 |
N/A |
INTRINSIC |
PDB:2OVM|B
|
1202 |
1225 |
2e-8 |
PDB |
low complexity region
|
1246 |
1259 |
N/A |
INTRINSIC |
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein with a tetratricopeptide repeat (TPR) domain containing several TPRs of about 34 aa each. These repeats are found in a variety of organisms including bacteria, fungi and plants, and are involved in a variety of functions including protein-protein interactions. This protein is embedded in the inner mitochondrial membrane and is involved in the formation of the mitochondrial respiratory chain III. It has also been suggested that this protein plays a role in cytokinesis. Mutations in this gene cause mitochondrial complex III deficiency. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Sep 2012]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 42 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Aass |
G |
A |
6: 23,113,705 (GRCm39) |
H246Y |
probably damaging |
Het |
Abat |
G |
A |
16: 8,429,000 (GRCm39) |
A322T |
probably damaging |
Het |
Bcat1 |
A |
G |
6: 144,978,564 (GRCm39) |
V152A |
probably damaging |
Het |
Btaf1 |
A |
G |
19: 36,969,826 (GRCm39) |
|
probably benign |
Het |
Elavl2 |
T |
C |
4: 91,141,776 (GRCm39) |
T291A |
probably benign |
Het |
Ezh1 |
G |
T |
11: 101,090,166 (GRCm39) |
H529Q |
probably damaging |
Het |
Fcgbp |
G |
A |
7: 27,805,799 (GRCm39) |
C2026Y |
probably damaging |
Het |
Fcgrt |
T |
A |
7: 44,744,682 (GRCm39) |
H258L |
probably damaging |
Het |
Galnt6 |
C |
T |
15: 100,601,374 (GRCm39) |
D302N |
probably benign |
Het |
Gldc |
T |
A |
19: 30,078,227 (GRCm39) |
R923S |
probably damaging |
Het |
Hspg2 |
G |
T |
4: 137,267,384 (GRCm39) |
A2033S |
probably damaging |
Het |
Htr2c |
T |
A |
X: 145,858,921 (GRCm39) |
M77K |
probably damaging |
Het |
Ifi208 |
A |
G |
1: 173,510,856 (GRCm39) |
Y337C |
probably damaging |
Het |
Ints11 |
G |
T |
4: 155,972,972 (GRCm39) |
W554L |
probably damaging |
Het |
Itgbl1 |
T |
A |
14: 124,094,904 (GRCm39) |
C186S |
probably damaging |
Het |
Lipf |
A |
G |
19: 33,953,995 (GRCm39) |
Y362C |
probably damaging |
Het |
Map2k7 |
T |
A |
8: 4,297,663 (GRCm39) |
S421R |
possibly damaging |
Het |
Mroh9 |
T |
G |
1: 162,890,071 (GRCm39) |
N222T |
possibly damaging |
Het |
Msl3 |
C |
A |
X: 167,453,247 (GRCm39) |
R89L |
probably benign |
Het |
Nrip1 |
T |
A |
16: 76,088,563 (GRCm39) |
D998V |
probably benign |
Het |
Nrk |
T |
A |
X: 137,896,678 (GRCm39) |
I1265N |
probably damaging |
Het |
Ntn5 |
A |
G |
7: 45,340,830 (GRCm39) |
|
probably benign |
Het |
Or11g27 |
A |
G |
14: 50,771,307 (GRCm39) |
N146S |
probably benign |
Het |
Or5w20 |
A |
T |
2: 87,727,243 (GRCm39) |
R233S |
possibly damaging |
Het |
Or6s1 |
T |
G |
14: 51,308,766 (GRCm39) |
E28A |
probably benign |
Het |
Plch2 |
T |
C |
4: 155,127,595 (GRCm39) |
|
probably benign |
Het |
Porcn |
C |
T |
X: 8,067,901 (GRCm39) |
V233I |
probably benign |
Het |
Ppp2r2a |
T |
C |
14: 67,276,361 (GRCm39) |
K48R |
probably benign |
Het |
Ppp4r3c1 |
G |
A |
X: 88,975,129 (GRCm39) |
T356I |
probably benign |
Het |
Rccd1 |
A |
T |
7: 79,968,755 (GRCm39) |
D268E |
probably benign |
Het |
Sacs |
C |
A |
14: 61,427,127 (GRCm39) |
S178R |
probably damaging |
Het |
Samd12 |
T |
A |
15: 53,521,862 (GRCm39) |
D116V |
probably damaging |
Het |
Slc12a8 |
A |
G |
16: 33,428,568 (GRCm39) |
E46G |
probably damaging |
Het |
Slc30a10 |
A |
T |
1: 185,187,438 (GRCm39) |
I60F |
possibly damaging |
Het |
Slc6a8 |
C |
T |
X: 72,722,583 (GRCm39) |
|
probably benign |
Het |
Sos2 |
A |
G |
12: 69,664,822 (GRCm39) |
|
probably benign |
Het |
Tbc1d31 |
T |
C |
15: 57,783,338 (GRCm39) |
V79A |
probably benign |
Het |
Tmem184c |
A |
T |
8: 78,331,443 (GRCm39) |
V102E |
probably benign |
Het |
Unc5d |
T |
A |
8: 29,142,855 (GRCm39) |
I866F |
probably benign |
Het |
Vmn1r7 |
A |
T |
6: 57,001,874 (GRCm39) |
C129S |
probably benign |
Het |
Vps41 |
T |
A |
13: 18,975,827 (GRCm39) |
|
probably benign |
Het |
Vwa8 |
C |
T |
14: 79,331,724 (GRCm39) |
A1275V |
possibly damaging |
Het |
|
Other mutations in Ttc19 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
R0091:Ttc19
|
UTSW |
11 |
62,199,910 (GRCm39) |
missense |
probably damaging |
1.00 |
R1929:Ttc19
|
UTSW |
11 |
62,172,650 (GRCm39) |
missense |
probably benign |
0.21 |
R2291:Ttc19
|
UTSW |
11 |
62,174,519 (GRCm39) |
missense |
probably damaging |
1.00 |
R4290:Ttc19
|
UTSW |
11 |
62,176,753 (GRCm39) |
splice site |
probably null |
|
R4681:Ttc19
|
UTSW |
11 |
62,199,917 (GRCm39) |
nonsense |
probably null |
|
R4824:Ttc19
|
UTSW |
11 |
62,199,922 (GRCm39) |
missense |
probably benign |
0.32 |
R5411:Ttc19
|
UTSW |
11 |
62,174,977 (GRCm39) |
missense |
probably benign |
0.06 |
R5790:Ttc19
|
UTSW |
11 |
62,172,340 (GRCm39) |
start codon destroyed |
probably null |
|
R6984:Ttc19
|
UTSW |
11 |
62,204,863 (GRCm39) |
missense |
probably damaging |
1.00 |
R9632:Ttc19
|
UTSW |
11 |
62,203,997 (GRCm39) |
missense |
probably benign |
0.00 |
R9710:Ttc19
|
UTSW |
11 |
62,203,997 (GRCm39) |
missense |
probably benign |
0.00 |
Z1176:Ttc19
|
UTSW |
11 |
62,204,916 (GRCm39) |
missense |
probably benign |
0.14 |
|
Posted On |
2014-05-07 |