Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02025:Tbc1d2'

184128

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Tbc1d2

Ensembl Gene

ENSMUSG00000039813

Gene Name

TBC1 domain family, member 2

Synonyms

PARIS-1, LOC381605, PARIS1, A630005A06Rik

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.167) question?

Stock #

IGL02025

Quality Score

Status

Chromosome

Chromosomal Location

46604390-46650209 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 46620713 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Tryptophan at position 366 (R366W)

Ref Sequence

ENSEMBL: ENSMUSP00000081670 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000084621]

AlphaFold

B1AVH7

Predicted Effect

probably damaging
Transcript: ENSMUST00000084621
AA Change: R366W

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000081670
Gene: ENSMUSG00000039813
AA Change: R366W

Domain	Start	End	E-Value	Type
PH	44	143	1.94e-11	SMART
low complexity region	147	159	N/A	INTRINSIC
low complexity region	165	180	N/A	INTRINSIC
low complexity region	189	206	N/A	INTRINSIC
coiled coil region	302	333	N/A	INTRINSIC
coiled coil region	362	394	N/A	INTRINSIC
low complexity region	398	410	N/A	INTRINSIC
Blast:TBC	454	491	3e-14	BLAST
low complexity region	526	539	N/A	INTRINSIC
Blast:TBC	557	591	3e-10	BLAST
TBC	616	834	1.63e-60	SMART
coiled coil region	869	906	N/A	INTRINSIC

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 33 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Afap1l1	T	C	18: 61,866,770 (GRCm39)		probably benign	Het
Akap6	A	G	12: 53,187,118 (GRCm39)	T1511A	probably benign	Het
Casp8	A	C	1: 58,863,306 (GRCm39)	I69L	possibly damaging	Het
Cdh23	T	C	10: 60,220,922 (GRCm39)	E1274G	probably damaging	Het
Cfap47	A	T	X: 78,554,036 (GRCm39)	S230R	probably benign	Het
Csgalnact1	C	A	8: 68,854,144 (GRCm39)	G219V	probably damaging	Het
Depdc5	A	G	5: 33,103,976 (GRCm39)		probably null	Het
Dock5	A	G	14: 68,000,736 (GRCm39)	S1656P	probably damaging	Het
Dock6	A	G	9: 21,720,885 (GRCm39)	S1707P	probably damaging	Het
Eddm3b	T	A	14: 51,354,228 (GRCm39)	V72D	probably damaging	Het
Etl4	A	G	2: 20,811,337 (GRCm39)	D1508G	probably damaging	Het
Gm20489	A	C	X: 100,307,290 (GRCm39)	V21G	probably damaging	Het
Il16	T	C	7: 83,302,056 (GRCm39)	N22S	probably damaging	Het
Ksr1	T	C	11: 78,912,276 (GRCm39)		probably null	Het
Lrrc32	C	T	7: 98,148,767 (GRCm39)	R516C	probably benign	Het
Naa25	T	C	5: 121,577,928 (GRCm39)	V945A	probably damaging	Het
Neb	T	C	2: 52,197,751 (GRCm39)	T501A	probably benign	Het
Npnt	A	C	3: 132,596,523 (GRCm39)		probably null	Het
Nr1h5	G	A	3: 102,856,942 (GRCm39)		probably benign	Het
Opalin	T	C	19: 41,060,674 (GRCm39)		probably benign	Het
Or10ak9	G	A	4: 118,726,362 (GRCm39)	C127Y	probably damaging	Het
Or2w6	A	G	13: 21,843,433 (GRCm39)	V20A	possibly damaging	Het
Or9s13	A	G	1: 92,548,269 (GRCm39)	I214V	probably benign	Het
Pls3	A	T	X: 74,840,101 (GRCm39)	L341H	probably damaging	Het
Pnp2	T	A	14: 51,197,010 (GRCm39)	L32H	probably damaging	Het
Prpf40b	T	C	15: 99,212,469 (GRCm39)	F571S	probably damaging	Het
Prss16	A	G	13: 22,187,191 (GRCm39)	S460P	probably damaging	Het
Sh3bp4	T	C	1: 89,073,008 (GRCm39)	S619P	probably benign	Het
Sirpb1b	C	T	3: 15,613,863 (GRCm39)	R73Q	probably damaging	Het
Slc22a8	G	A	19: 8,571,539 (GRCm39)	G90E	possibly damaging	Het
Tns2	T	A	15: 102,020,484 (GRCm39)	Y783*	probably null	Het
Zfp318	C	T	17: 46,707,736 (GRCm39)	R265*	probably null	Het
Zfp7	C	T	15: 76,772,464 (GRCm39)	S55F	probably damaging	Het

Other mutations in Tbc1d2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00714:Tbc1d2	APN	4	46,649,745 (GRCm39)	missense	probably benign	0.04
IGL01748:Tbc1d2	APN	4	46,616,306 (GRCm39)	missense	probably damaging	0.99
IGL01863:Tbc1d2	APN	4	46,607,064 (GRCm39)	missense	possibly damaging	0.66
IGL02014:Tbc1d2	APN	4	46,649,778 (GRCm39)	missense	possibly damaging	0.83
IGL02551:Tbc1d2	APN	4	46,649,916 (GRCm39)	missense	probably benign
IGL02571:Tbc1d2	APN	4	46,628,370 (GRCm39)	missense	probably benign	0.00
IGL03149:Tbc1d2	APN	4	46,637,619 (GRCm39)	missense	probably benign	0.31
R0347:Tbc1d2	UTSW	4	46,620,574 (GRCm39)	missense	possibly damaging	0.82
R0374:Tbc1d2	UTSW	4	46,649,913 (GRCm39)	missense	possibly damaging	0.95
R0522:Tbc1d2	UTSW	4	46,649,806 (GRCm39)	missense	probably damaging	1.00
R0883:Tbc1d2	UTSW	4	46,609,003 (GRCm39)	nonsense	probably null
R1227:Tbc1d2	UTSW	4	46,620,629 (GRCm39)	missense	probably benign	0.00
R1464:Tbc1d2	UTSW	4	46,606,491 (GRCm39)	missense	possibly damaging	0.51
R1464:Tbc1d2	UTSW	4	46,606,491 (GRCm39)	missense	possibly damaging	0.51
R1658:Tbc1d2	UTSW	4	46,614,207 (GRCm39)	missense	probably damaging	1.00
R1959:Tbc1d2	UTSW	4	46,606,419 (GRCm39)	missense	probably benign	0.44
R2108:Tbc1d2	UTSW	4	46,637,652 (GRCm39)	missense	possibly damaging	0.62
R3864:Tbc1d2	UTSW	4	46,620,484 (GRCm39)	missense	probably benign	0.01
R4475:Tbc1d2	UTSW	4	46,609,080 (GRCm39)	missense	possibly damaging	0.92
R5112:Tbc1d2	UTSW	4	46,606,503 (GRCm39)	missense	probably damaging	1.00
R5127:Tbc1d2	UTSW	4	46,633,639 (GRCm39)	intron	probably benign
R5215:Tbc1d2	UTSW	4	46,614,006 (GRCm39)	missense	probably benign	0.42
R5475:Tbc1d2	UTSW	4	46,629,912 (GRCm39)	missense	probably benign	0.01
R5550:Tbc1d2	UTSW	4	46,646,138 (GRCm39)	missense	probably benign	0.00
R5558:Tbc1d2	UTSW	4	46,629,912 (GRCm39)	missense	probably benign	0.01
R5564:Tbc1d2	UTSW	4	46,629,912 (GRCm39)	missense	probably benign	0.01
R5599:Tbc1d2	UTSW	4	46,629,912 (GRCm39)	missense	probably benign	0.01
R5600:Tbc1d2	UTSW	4	46,629,912 (GRCm39)	missense	probably benign	0.01
R5699:Tbc1d2	UTSW	4	46,616,298 (GRCm39)	missense	probably benign	0.31
R5866:Tbc1d2	UTSW	4	46,637,715 (GRCm39)	missense	possibly damaging	0.80
R5909:Tbc1d2	UTSW	4	46,629,912 (GRCm39)	missense	probably benign	0.01
R5911:Tbc1d2	UTSW	4	46,629,912 (GRCm39)	missense	probably benign	0.01
R5980:Tbc1d2	UTSW	4	46,629,912 (GRCm39)	missense	probably benign	0.01
R6194:Tbc1d2	UTSW	4	46,629,912 (GRCm39)	missense	probably benign	0.01
R6195:Tbc1d2	UTSW	4	46,629,912 (GRCm39)	missense	probably benign	0.01
R6209:Tbc1d2	UTSW	4	46,614,068 (GRCm39)	missense	probably damaging	1.00
R6211:Tbc1d2	UTSW	4	46,629,912 (GRCm39)	missense	probably benign	0.01
R6232:Tbc1d2	UTSW	4	46,629,912 (GRCm39)	missense	probably benign	0.01
R6242:Tbc1d2	UTSW	4	46,629,912 (GRCm39)	missense	probably benign	0.01
R6261:Tbc1d2	UTSW	4	46,637,692 (GRCm39)	missense	possibly damaging	0.47
R6273:Tbc1d2	UTSW	4	46,629,912 (GRCm39)	missense	probably benign	0.01
R6274:Tbc1d2	UTSW	4	46,629,912 (GRCm39)	missense	probably benign	0.01
R6285:Tbc1d2	UTSW	4	46,615,045 (GRCm39)	missense	possibly damaging	0.49
R6333:Tbc1d2	UTSW	4	46,620,736 (GRCm39)	missense	possibly damaging	0.64
R6369:Tbc1d2	UTSW	4	46,614,420 (GRCm39)	missense	probably benign	0.41
R6912:Tbc1d2	UTSW	4	46,649,712 (GRCm39)	missense	probably damaging	1.00
R7428:Tbc1d2	UTSW	4	46,649,965 (GRCm39)	missense	probably benign	0.02
R7775:Tbc1d2	UTSW	4	46,637,746 (GRCm39)	splice site	probably null
R7824:Tbc1d2	UTSW	4	46,637,746 (GRCm39)	splice site	probably null
R8069:Tbc1d2	UTSW	4	46,649,737 (GRCm39)	missense	possibly damaging	0.81
R8135:Tbc1d2	UTSW	4	46,609,071 (GRCm39)	missense	probably benign	0.31
R8203:Tbc1d2	UTSW	4	46,606,476 (GRCm39)	missense	probably damaging	1.00
R8271:Tbc1d2	UTSW	4	46,649,791 (GRCm39)	missense	possibly damaging	0.88
R8690:Tbc1d2	UTSW	4	46,615,106 (GRCm39)	missense	possibly damaging	0.95
R9025:Tbc1d2	UTSW	4	46,607,062 (GRCm39)	missense	probably damaging	1.00
R9236:Tbc1d2	UTSW	4	46,609,029 (GRCm39)	missense	probably benign	0.08
R9622:Tbc1d2	UTSW	4	46,609,065 (GRCm39)	missense	probably damaging	1.00
R9776:Tbc1d2	UTSW	4	46,650,007 (GRCm39)	missense	probably benign	0.00
X0023:Tbc1d2	UTSW	4	46,615,037 (GRCm39)	missense	probably benign	0.00
X0063:Tbc1d2	UTSW	4	46,606,492 (GRCm39)	missense	probably damaging	1.00
Z1177:Tbc1d2	UTSW	4	46,650,016 (GRCm39)	missense	probably benign

Posted On

2014-05-07