Incidental Mutation 'IGL02026:Hlcs'
ID |
184184 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Hlcs
|
Ensembl Gene |
ENSMUSG00000040820 |
Gene Name |
holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase) |
Synonyms |
D16Jhu34, 410I21.SP6 |
Accession Numbers |
|
Essential gene? |
Essential
(E-score: 1.000)
|
Stock # |
IGL02026
|
Quality Score |
|
Status
|
|
Chromosome |
16 |
Chromosomal Location |
93929741-94114430 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to T
at 93935564 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Isoleucine to Asparagine
at position 576
(I576N)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000130981
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000099512]
[ENSMUST00000163193]
[ENSMUST00000227141]
[ENSMUST00000227698]
[ENSMUST00000228910]
|
AlphaFold |
Q920N2 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000099512
AA Change: I576N
PolyPhen 2
Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)
|
SMART Domains |
Protein: ENSMUSP00000097112 Gene: ENSMUSG00000040820 AA Change: I576N
Domain | Start | End | E-Value | Type |
low complexity region
|
38 |
55 |
N/A |
INTRINSIC |
low complexity region
|
377 |
391 |
N/A |
INTRINSIC |
Pfam:BPL_LplA_LipB
|
467 |
599 |
1.9e-21 |
PFAM |
Pfam:BPL_C
|
665 |
714 |
3.7e-12 |
PFAM |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000163193
AA Change: I576N
PolyPhen 2
Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)
|
SMART Domains |
Protein: ENSMUSP00000130981 Gene: ENSMUSG00000040820 AA Change: I576N
Domain | Start | End | E-Value | Type |
low complexity region
|
38 |
55 |
N/A |
INTRINSIC |
low complexity region
|
377 |
391 |
N/A |
INTRINSIC |
Pfam:BPL_LplA_LipB
|
467 |
599 |
3.6e-30 |
PFAM |
Pfam:BPL_C
|
665 |
714 |
4.9e-13 |
PFAM |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000227141
AA Change: I723N
PolyPhen 2
Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000227447
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000227618
|
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000227698
AA Change: I95N
PolyPhen 2
Score 0.678 (Sensitivity: 0.86; Specificity: 0.92)
|
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000228910
AA Change: I181N
PolyPhen 2
Score 0.865 (Sensitivity: 0.83; Specificity: 0.93)
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes an enzyme that catalyzes the binding of biotin to carboxylases and histones. The protein plays an important role in gluconeogenesis, fatty acid synthesis and branched chain amino acid catabolism. Defects in this gene are the cause of holocarboxylase synthetase deficiency. Multiple alternatively spliced variants, encoding the same protein, have been identified.[provided by RefSeq, Jun 2011]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 47 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Adamdec1 |
A |
T |
14: 68,809,251 (GRCm39) |
V237E |
possibly damaging |
Het |
Amh |
T |
C |
10: 80,641,242 (GRCm39) |
L54P |
probably damaging |
Het |
Aoc3 |
T |
C |
11: 101,228,421 (GRCm39) |
S743P |
probably benign |
Het |
Arhgap23 |
T |
A |
11: 97,342,407 (GRCm39) |
W19R |
probably damaging |
Het |
Atm |
C |
T |
9: 53,353,717 (GRCm39) |
|
probably null |
Het |
Ccdc47 |
T |
C |
11: 106,095,853 (GRCm39) |
E281G |
probably damaging |
Het |
Col7a1 |
A |
C |
9: 108,797,097 (GRCm39) |
K1650N |
probably damaging |
Het |
Cstdc5 |
C |
A |
16: 36,187,848 (GRCm39) |
V6F |
possibly damaging |
Het |
Evi2b |
T |
C |
11: 79,406,613 (GRCm39) |
S321G |
probably damaging |
Het |
Fancm |
T |
G |
12: 65,152,508 (GRCm39) |
V988G |
probably benign |
Het |
Gbp2 |
A |
G |
3: 142,339,241 (GRCm39) |
Y431C |
probably damaging |
Het |
Gclc |
T |
C |
9: 77,699,342 (GRCm39) |
V530A |
probably benign |
Het |
Gm5885 |
T |
C |
6: 133,508,291 (GRCm39) |
|
noncoding transcript |
Het |
Hnrnpul1 |
A |
T |
7: 25,444,587 (GRCm39) |
F240L |
probably damaging |
Het |
Itgb6 |
C |
A |
2: 60,458,410 (GRCm39) |
V448F |
possibly damaging |
Het |
Lama1 |
A |
G |
17: 68,116,287 (GRCm39) |
T2385A |
possibly damaging |
Het |
Lamc2 |
C |
T |
1: 153,020,482 (GRCm39) |
|
probably benign |
Het |
Lrrc32 |
C |
T |
7: 98,148,767 (GRCm39) |
R516C |
probably benign |
Het |
Lrrtm3 |
T |
C |
10: 63,924,231 (GRCm39) |
N312S |
probably damaging |
Het |
Ltbp4 |
G |
A |
7: 27,026,842 (GRCm39) |
R468* |
probably null |
Het |
Man1a |
T |
C |
10: 53,890,569 (GRCm39) |
E373G |
probably damaging |
Het |
Myo1h |
A |
T |
5: 114,461,505 (GRCm39) |
Q250L |
probably null |
Het |
Myo9a |
T |
C |
9: 59,813,245 (GRCm39) |
V2077A |
probably damaging |
Het |
Or14j3 |
A |
G |
17: 37,900,298 (GRCm39) |
|
probably benign |
Het |
Otud5 |
C |
T |
X: 7,738,232 (GRCm39) |
|
probably benign |
Het |
Pcsk1 |
A |
G |
13: 75,260,772 (GRCm39) |
S332G |
probably benign |
Het |
Pde8b |
A |
G |
13: 95,170,869 (GRCm39) |
V549A |
probably damaging |
Het |
Pgap1 |
A |
T |
1: 54,533,978 (GRCm39) |
M645K |
probably benign |
Het |
Pm20d1 |
A |
T |
1: 131,729,497 (GRCm39) |
R175* |
probably null |
Het |
Polr2b |
A |
G |
5: 77,480,099 (GRCm39) |
N585S |
probably benign |
Het |
Recql |
T |
A |
6: 142,312,394 (GRCm39) |
K41* |
probably null |
Het |
Sccpdh |
A |
T |
1: 179,505,634 (GRCm39) |
H138L |
possibly damaging |
Het |
Sec31a |
A |
T |
5: 100,517,485 (GRCm39) |
S951T |
probably benign |
Het |
Slc44a4 |
A |
T |
17: 35,140,832 (GRCm39) |
|
probably benign |
Het |
Tchhl1 |
G |
T |
3: 93,377,862 (GRCm39) |
A189S |
probably damaging |
Het |
Tdrd12 |
G |
A |
7: 35,203,658 (GRCm39) |
|
probably benign |
Het |
Tesl2 |
T |
G |
X: 23,824,233 (GRCm39) |
H314P |
probably damaging |
Het |
Trbv12-1 |
A |
G |
6: 41,090,928 (GRCm39) |
D100G |
probably damaging |
Het |
Ttll13 |
T |
A |
7: 79,910,127 (GRCm39) |
S757T |
probably benign |
Het |
Vipas39 |
T |
A |
12: 87,298,483 (GRCm39) |
|
probably benign |
Het |
Vmn1r64 |
G |
A |
7: 5,886,649 (GRCm39) |
P298L |
possibly damaging |
Het |
Vmn1r81 |
A |
G |
7: 11,994,432 (GRCm39) |
S59P |
probably damaging |
Het |
Vsx1 |
A |
T |
2: 150,530,447 (GRCm39) |
V145D |
probably benign |
Het |
Wdfy4 |
T |
A |
14: 32,815,257 (GRCm39) |
N1586I |
probably damaging |
Het |
Zan |
T |
A |
5: 137,403,726 (GRCm39) |
|
probably benign |
Het |
Zfp318 |
C |
T |
17: 46,707,736 (GRCm39) |
R265* |
probably null |
Het |
Zzef1 |
T |
A |
11: 72,772,164 (GRCm39) |
M1707K |
probably benign |
Het |
|
Other mutations in Hlcs |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01078:Hlcs
|
APN |
16 |
93,934,019 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL02341:Hlcs
|
APN |
16 |
94,031,969 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL03075:Hlcs
|
APN |
16 |
93,939,706 (GRCm39) |
missense |
probably damaging |
1.00 |
PIT4515001:Hlcs
|
UTSW |
16 |
94,068,275 (GRCm39) |
missense |
probably benign |
0.45 |
R0372:Hlcs
|
UTSW |
16 |
93,939,766 (GRCm39) |
missense |
possibly damaging |
0.69 |
R0664:Hlcs
|
UTSW |
16 |
94,032,170 (GRCm39) |
missense |
probably damaging |
1.00 |
R0731:Hlcs
|
UTSW |
16 |
93,932,711 (GRCm39) |
missense |
probably damaging |
1.00 |
R1465:Hlcs
|
UTSW |
16 |
94,069,151 (GRCm39) |
missense |
probably damaging |
0.99 |
R1465:Hlcs
|
UTSW |
16 |
94,069,151 (GRCm39) |
missense |
probably damaging |
0.99 |
R1761:Hlcs
|
UTSW |
16 |
94,068,866 (GRCm39) |
missense |
probably benign |
0.05 |
R2013:Hlcs
|
UTSW |
16 |
94,063,599 (GRCm39) |
missense |
probably benign |
0.17 |
R2014:Hlcs
|
UTSW |
16 |
94,063,599 (GRCm39) |
missense |
probably benign |
0.17 |
R2015:Hlcs
|
UTSW |
16 |
94,063,599 (GRCm39) |
missense |
probably benign |
0.17 |
R2204:Hlcs
|
UTSW |
16 |
94,032,011 (GRCm39) |
missense |
probably benign |
0.30 |
R2371:Hlcs
|
UTSW |
16 |
94,068,926 (GRCm39) |
missense |
probably damaging |
0.98 |
R3816:Hlcs
|
UTSW |
16 |
93,933,947 (GRCm39) |
missense |
probably benign |
0.11 |
R3822:Hlcs
|
UTSW |
16 |
94,068,840 (GRCm39) |
missense |
probably benign |
0.04 |
R4422:Hlcs
|
UTSW |
16 |
93,939,819 (GRCm39) |
missense |
possibly damaging |
0.56 |
R4657:Hlcs
|
UTSW |
16 |
94,063,557 (GRCm39) |
missense |
probably benign |
0.00 |
R4783:Hlcs
|
UTSW |
16 |
94,069,398 (GRCm39) |
missense |
possibly damaging |
0.82 |
R5347:Hlcs
|
UTSW |
16 |
94,068,383 (GRCm39) |
missense |
possibly damaging |
0.93 |
R5808:Hlcs
|
UTSW |
16 |
94,063,491 (GRCm39) |
missense |
probably benign |
0.00 |
R5940:Hlcs
|
UTSW |
16 |
93,935,571 (GRCm39) |
missense |
probably damaging |
0.99 |
R6341:Hlcs
|
UTSW |
16 |
94,032,022 (GRCm39) |
missense |
probably damaging |
1.00 |
R6943:Hlcs
|
UTSW |
16 |
93,942,261 (GRCm39) |
missense |
possibly damaging |
0.75 |
R7053:Hlcs
|
UTSW |
16 |
94,068,874 (GRCm39) |
missense |
possibly damaging |
0.91 |
R7157:Hlcs
|
UTSW |
16 |
94,069,023 (GRCm39) |
nonsense |
probably null |
|
R7166:Hlcs
|
UTSW |
16 |
94,063,585 (GRCm39) |
missense |
possibly damaging |
0.92 |
R7313:Hlcs
|
UTSW |
16 |
94,068,362 (GRCm39) |
missense |
probably damaging |
1.00 |
R7427:Hlcs
|
UTSW |
16 |
94,068,758 (GRCm39) |
missense |
probably benign |
0.00 |
R7428:Hlcs
|
UTSW |
16 |
94,068,758 (GRCm39) |
missense |
probably benign |
0.00 |
R7547:Hlcs
|
UTSW |
16 |
94,032,031 (GRCm39) |
nonsense |
probably null |
|
R7548:Hlcs
|
UTSW |
16 |
93,933,876 (GRCm39) |
nonsense |
probably null |
|
R8172:Hlcs
|
UTSW |
16 |
94,068,485 (GRCm39) |
missense |
probably damaging |
1.00 |
R8241:Hlcs
|
UTSW |
16 |
94,068,677 (GRCm39) |
missense |
probably damaging |
1.00 |
R8500:Hlcs
|
UTSW |
16 |
94,063,617 (GRCm39) |
missense |
possibly damaging |
0.89 |
R8940:Hlcs
|
UTSW |
16 |
94,032,085 (GRCm39) |
missense |
probably benign |
|
R9274:Hlcs
|
UTSW |
16 |
94,088,785 (GRCm39) |
missense |
possibly damaging |
0.85 |
R9360:Hlcs
|
UTSW |
16 |
93,932,672 (GRCm39) |
missense |
probably damaging |
1.00 |
R9361:Hlcs
|
UTSW |
16 |
93,939,799 (GRCm39) |
missense |
probably benign |
0.10 |
R9564:Hlcs
|
UTSW |
16 |
93,935,580 (GRCm39) |
missense |
probably benign |
0.01 |
X0065:Hlcs
|
UTSW |
16 |
93,934,032 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1176:Hlcs
|
UTSW |
16 |
94,063,518 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Posted On |
2014-05-07 |