Incidental Mutation 'IGL02027:Vmn1r16'
ID 184193
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Vmn1r16
Ensembl Gene ENSMUSG00000115792
Gene Name vomeronasal 1 receptor 16
Synonyms V1rc29
Accession Numbers
Essential gene? Probably non essential (E-score: 0.111) question?
Stock # IGL02027
Quality Score
Status
Chromosome 6
Chromosomal Location 57297724-57300620 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 57300044 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Alanine at position 193 (T193A)
Ref Sequence ENSEMBL: ENSMUSP00000154566 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000177267] [ENSMUST00000227168] [ENSMUST00000227283] [ENSMUST00000228356]
AlphaFold K7N775
Predicted Effect possibly damaging
Transcript: ENSMUST00000177267
AA Change: T193A

PolyPhen 2 Score 0.487 (Sensitivity: 0.88; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000134873
Gene: ENSMUSG00000093523
AA Change: T193A

DomainStartEndE-ValueType
Pfam:V1R 28 293 3.4e-57 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000227168
AA Change: T193A

PolyPhen 2 Score 0.487 (Sensitivity: 0.88; Specificity: 0.90)
Predicted Effect possibly damaging
Transcript: ENSMUST00000227283
AA Change: T193A

PolyPhen 2 Score 0.487 (Sensitivity: 0.88; Specificity: 0.90)
Predicted Effect probably benign
Transcript: ENSMUST00000228356
AA Change: T193A

PolyPhen 2 Score 0.403 (Sensitivity: 0.89; Specificity: 0.89)
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 45 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adipor1 A G 1: 134,358,923 (GRCm39) T312A probably benign Het
Begain T G 12: 109,000,235 (GRCm39) K384Q possibly damaging Het
C2cd6 T C 1: 59,099,763 (GRCm39) I393V probably benign Het
Catsperz A G 19: 6,902,664 (GRCm39) V5A probably benign Het
Cbx1 T A 11: 96,692,315 (GRCm39) F67L probably damaging Het
Ccn2 A G 10: 24,472,307 (GRCm39) S117G probably damaging Het
Ccn3 T C 15: 54,611,330 (GRCm39) V155A probably damaging Het
Cerkl T C 2: 79,171,630 (GRCm39) probably benign Het
Cubn G T 2: 13,292,405 (GRCm39) D3259E probably damaging Het
Cyp2u1 A G 3: 131,091,600 (GRCm39) Y307H probably damaging Het
Dcaf6 A C 1: 165,251,910 (GRCm39) D71E probably damaging Het
Dclk3 A T 9: 111,296,911 (GRCm39) K152* probably null Het
Fcgbp G A 7: 27,774,629 (GRCm39) D68N probably damaging Het
Gm6576 A G 15: 27,025,952 (GRCm39) noncoding transcript Het
Has2 T C 15: 56,531,567 (GRCm39) T383A probably damaging Het
Htr1f T A 16: 64,746,684 (GRCm39) K203* probably null Het
Il36g A T 2: 24,082,797 (GRCm39) I191L probably benign Het
Iqgap3 T C 3: 87,994,649 (GRCm39) I116T possibly damaging Het
Itga1 C T 13: 115,126,591 (GRCm39) probably null Het
Kif5b T C 18: 6,209,089 (GRCm39) D891G possibly damaging Het
Krt74 T C 15: 101,665,229 (GRCm39) noncoding transcript Het
Lama3 A G 18: 12,649,570 (GRCm39) K1776E probably damaging Het
Lats1 T C 10: 7,588,712 (GRCm39) S1110P probably benign Het
Lipo3 T A 19: 33,557,919 (GRCm39) K158* probably null Het
Lrrc9 T A 12: 72,517,108 (GRCm39) probably benign Het
Met A G 6: 17,563,726 (GRCm39) probably benign Het
Mmp13 A G 9: 7,272,955 (GRCm39) Y105C probably damaging Het
Mtus1 T C 8: 41,446,638 (GRCm39) E1151G probably damaging Het
Nptx1 T C 11: 119,435,422 (GRCm39) D298G possibly damaging Het
Odad4 C T 11: 100,460,728 (GRCm39) T495M probably damaging Het
Pdlim1 T C 19: 40,231,910 (GRCm39) N156S probably benign Het
Pdzk1 A G 3: 96,761,989 (GRCm39) probably benign Het
Pex5 A G 6: 124,375,847 (GRCm39) S448P probably benign Het
Polr3e G T 7: 120,530,186 (GRCm39) R124L probably damaging Het
Ppp2r2c C T 5: 37,109,816 (GRCm39) R392C probably damaging Het
Prpf4b T C 13: 35,073,554 (GRCm39) I543T probably benign Het
Prr27 A G 5: 87,991,302 (GRCm39) S305G possibly damaging Het
Repin1 A G 6: 48,573,407 (GRCm39) H56R probably damaging Het
Ryr2 A T 13: 11,611,998 (GRCm39) L408H probably damaging Het
Sbf2 T A 7: 110,060,348 (GRCm39) Q205H probably damaging Het
Sgo2b G A 8: 64,379,863 (GRCm39) P990S probably benign Het
Slc33a1 G T 3: 63,855,562 (GRCm39) P361Q probably damaging Het
Tmem98 T C 11: 80,706,483 (GRCm39) probably benign Het
Vmn1r5 T A 6: 56,962,640 (GRCm39) I105K probably damaging Het
Zfp473 A T 7: 44,387,462 (GRCm39) probably benign Het
Other mutations in Vmn1r16
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01350:Vmn1r16 APN 6 57,299,716 (GRCm39) missense possibly damaging 0.74
IGL02804:Vmn1r16 APN 6 57,300,467 (GRCm39) missense probably benign 0.18
IGL03329:Vmn1r16 APN 6 57,300,603 (GRCm39) missense probably damaging 0.99
IGL03392:Vmn1r16 APN 6 57,299,879 (GRCm39) missense probably damaging 1.00
I1329:Vmn1r16 UTSW 6 57,300,519 (GRCm39) missense probably damaging 0.97
PIT4581001:Vmn1r16 UTSW 6 57,299,858 (GRCm39) missense probably benign 0.12
R0750:Vmn1r16 UTSW 6 57,299,812 (GRCm39) missense probably benign 0.00
R1137:Vmn1r16 UTSW 6 57,300,221 (GRCm39) missense probably damaging 1.00
R1239:Vmn1r16 UTSW 6 57,300,618 (GRCm39) start codon destroyed probably null 1.00
R1796:Vmn1r16 UTSW 6 57,300,256 (GRCm39) missense probably benign 0.03
R1858:Vmn1r16 UTSW 6 57,299,884 (GRCm39) missense probably damaging 1.00
R1895:Vmn1r16 UTSW 6 57,299,885 (GRCm39) missense probably benign 0.31
R1946:Vmn1r16 UTSW 6 57,299,885 (GRCm39) missense probably benign 0.31
R3832:Vmn1r16 UTSW 6 57,300,212 (GRCm39) missense probably benign 0.00
R4801:Vmn1r16 UTSW 6 57,300,175 (GRCm39) missense probably benign 0.03
R4802:Vmn1r16 UTSW 6 57,300,175 (GRCm39) missense probably benign 0.03
R6658:Vmn1r16 UTSW 6 57,300,091 (GRCm39) nonsense probably null
R6981:Vmn1r16 UTSW 6 57,300,473 (GRCm39) missense probably benign 0.30
R6991:Vmn1r16 UTSW 6 57,299,869 (GRCm39) nonsense probably null
R7915:Vmn1r16 UTSW 6 57,300,380 (GRCm39) missense probably damaging 1.00
R8214:Vmn1r16 UTSW 6 57,300,424 (GRCm39) missense noncoding transcript
R8459:Vmn1r16 UTSW 6 57,300,347 (GRCm39) missense probably benign 0.12
R8531:Vmn1r16 UTSW 6 57,299,900 (GRCm39) missense probably damaging 1.00
R8676:Vmn1r16 UTSW 6 57,299,814 (GRCm39) missense probably benign 0.01
R9096:Vmn1r16 UTSW 6 57,300,250 (GRCm39) missense probably benign 0.02
R9097:Vmn1r16 UTSW 6 57,300,250 (GRCm39) missense probably benign 0.02
X0061:Vmn1r16 UTSW 6 57,300,349 (GRCm39) missense probably damaging 1.00
Posted On 2014-05-07