Incidental Mutation 'IGL02064:Pcdh19'
ID 185543
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Pcdh19
Ensembl Gene ENSMUSG00000051323
Gene Name protocadherin 19
Synonyms LOC279653, B530002L05Rik
Accession Numbers
Essential gene? Probably non essential (E-score: 0.055) question?
Stock # IGL02064
Quality Score
Status
Chromosome X
Chromosomal Location 132483609-132589736 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 132586719 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Methionine to Threonine at position 432 (M432T)
Ref Sequence ENSEMBL: ENSMUSP00000128313 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000060309] [ENSMUST00000149154] [ENSMUST00000167944]
AlphaFold Q80TF3
Predicted Effect probably benign
Transcript: ENSMUST00000060309
SMART Domains Protein: ENSMUSP00000049889
Gene: ENSMUSG00000051323

DomainStartEndE-ValueType
CA 18 104 2.34e-25 SMART
CA 133 213 4.18e-13 SMART
transmembrane domain 222 244 N/A INTRINSIC
low complexity region 269 279 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000149154
AA Change: M432T

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000116886
Gene: ENSMUSG00000051323
AA Change: M432T

DomainStartEndE-ValueType
signal peptide 1 21 N/A INTRINSIC
CA 50 127 2.36e-2 SMART
CA 151 236 1.44e-16 SMART
CA 260 344 3.66e-27 SMART
low complexity region 347 361 N/A INTRINSIC
CA 371 451 1.95e-22 SMART
CA 475 561 2.34e-25 SMART
CA 590 670 4.18e-13 SMART
transmembrane domain 679 701 N/A INTRINSIC
low complexity region 773 783 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000167944
AA Change: M432T

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000128313
Gene: ENSMUSG00000051323
AA Change: M432T

DomainStartEndE-ValueType
signal peptide 1 21 N/A INTRINSIC
CA 50 127 2.36e-2 SMART
CA 151 236 1.44e-16 SMART
CA 260 344 3.66e-27 SMART
low complexity region 347 361 N/A INTRINSIC
CA 371 451 1.95e-22 SMART
CA 475 561 2.34e-25 SMART
CA 590 670 4.18e-13 SMART
transmembrane domain 679 701 N/A INTRINSIC
low complexity region 726 736 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000181867
Predicted Effect noncoding transcript
Transcript: ENSMUST00000193485
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the delta-2 protocadherin subclass of the cadherin superfamily. The encoded protein is thought to be a calcium-dependent cell-adhesion protein that is primarily expressed in the brain. Defects in this gene are a cause of epilepsy female-restricted with mental retardation (EFMR). Three transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, May 2010]
PHENOTYPE: Female mice heterozygous for a null mutation display abnormal electrocorticograms and distinct clusters of null and wild-type cells in the brain. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 50 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aadacl2fm3 T C 3: 59,784,463 (GRCm39) L312P probably damaging Het
Acap2 A C 16: 30,946,146 (GRCm39) W284G probably damaging Het
Acsf3 T C 8: 123,506,986 (GRCm39) L93P possibly damaging Het
Agbl2 G T 2: 90,614,368 (GRCm39) probably benign Het
Arap3 C T 18: 38,124,754 (GRCm39) G242D probably damaging Het
Asxl3 G A 18: 22,657,401 (GRCm39) V1804I possibly damaging Het
Bnc1 C A 7: 81,623,251 (GRCm39) V659L probably benign Het
Brd8 C T 18: 34,735,780 (GRCm39) S899N probably damaging Het
Car9 A G 4: 43,507,363 (GRCm39) E103G probably benign Het
Chrm4 A G 2: 91,758,176 (GRCm39) T195A probably damaging Het
Cldn10 T C 14: 119,092,424 (GRCm39) I8T probably damaging Het
Col12a1 G A 9: 79,599,654 (GRCm39) S833F probably benign Het
Cryba2 T A 1: 74,929,720 (GRCm39) D139V possibly damaging Het
Emp1 T A 6: 135,354,210 (GRCm39) M1K probably null Het
Entrep3 C T 3: 89,095,903 (GRCm39) R545* probably null Het
Exosc4 C A 15: 76,213,836 (GRCm39) A220E probably damaging Het
Fryl A G 5: 73,282,112 (GRCm39) probably benign Het
Grid2 C T 6: 64,040,919 (GRCm39) T287I probably benign Het
Grifin C T 5: 140,550,494 (GRCm39) A7T probably damaging Het
Gzmg T C 14: 56,394,798 (GRCm39) K157E probably benign Het
Kcnq2 A T 2: 180,750,819 (GRCm39) I340N probably damaging Het
Klrb1 T A 6: 128,687,600 (GRCm39) H98L probably benign Het
Krt90 T C 15: 101,471,088 (GRCm39) H58R possibly damaging Het
Krtap5-2 C A 7: 141,729,468 (GRCm39) G71C unknown Het
Krtap7-1 A T 16: 89,305,011 (GRCm39) M47K probably benign Het
Lmntd1 T A 6: 145,373,002 (GRCm39) probably null Het
Ly6g2 A G 15: 75,093,505 (GRCm39) probably benign Het
Musk A G 4: 58,286,128 (GRCm39) N6S possibly damaging Het
Or2aj4 A G 16: 19,385,298 (GRCm39) C112R probably damaging Het
Or51a39 A G 7: 102,362,808 (GRCm39) F271L probably damaging Het
Or56a42-ps1 A T 7: 104,776,241 (GRCm39) F89Y possibly damaging Het
Or5p58 T G 7: 107,694,454 (GRCm39) T108P probably benign Het
Or8c15 T A 9: 38,120,874 (GRCm39) I122N probably damaging Het
Prdm1 A G 10: 44,317,338 (GRCm39) F495S probably damaging Het
Prkar2a T C 9: 108,610,403 (GRCm39) Y211H possibly damaging Het
Ralgapa1 C A 12: 55,754,862 (GRCm39) G1143V probably damaging Het
Rbbp7 A G X: 161,552,783 (GRCm39) probably null Het
Scel C A 14: 103,770,762 (GRCm39) H65Q probably damaging Het
Sec24d T C 3: 123,137,463 (GRCm39) probably benign Het
Sfswap C A 5: 129,637,860 (GRCm39) T839N probably benign Het
Slc15a1 T C 14: 121,699,911 (GRCm39) I636V possibly damaging Het
Slc15a1 G T 14: 121,699,886 (GRCm39) P644H probably benign Het
Slc6a21 T A 7: 44,935,883 (GRCm39) I38N possibly damaging Het
Sucla2 C T 14: 73,816,913 (GRCm39) Q218* probably null Het
Tbc1d14 A T 5: 36,665,019 (GRCm39) L237* probably null Het
Trpm7 C T 2: 126,639,863 (GRCm39) E1578K probably damaging Het
Ttc17 G A 2: 94,161,012 (GRCm39) T896I probably damaging Het
Virma A G 4: 11,513,163 (GRCm39) D339G possibly damaging Het
Vmn2r54 T A 7: 12,349,533 (GRCm39) Y683F probably benign Het
Xrra1 T A 7: 99,563,411 (GRCm39) L466Q probably damaging Het
Other mutations in Pcdh19
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02085:Pcdh19 APN X 132,582,007 (GRCm39) nonsense probably null
IGL02089:Pcdh19 APN X 132,489,245 (GRCm39) missense probably benign 0.45
R2895:Pcdh19 UTSW X 132,582,058 (GRCm39) frame shift probably null
R2895:Pcdh19 UTSW X 132,582,057 (GRCm39) frame shift probably null
R2896:Pcdh19 UTSW X 132,582,058 (GRCm39) frame shift probably null
Z1176:Pcdh19 UTSW X 132,582,841 (GRCm39) missense probably null 0.28
Z1177:Pcdh19 UTSW X 132,488,766 (GRCm39) missense probably benign 0.01
Posted On 2014-05-07