Mutagenetix > Incidental Mutation

Incidental Mutation 'R0505:Meis1'

186152

Institutional Source

Beutler Lab

Gene Symbol

Meis1

Ensembl Gene

ENSMUSG00000020160

Gene Name

Meis homeobox 1

Synonyms

C530044H18Rik

MMRRC Submission

038700-MU

Accession Numbers

Is this an essential gene?

Essential (E-score: 1.000) question?

Stock #

R0505 (G1)

Quality Score

Status

Validated

Chromosome

Chromosomal Location

18879817-19018985 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 19011360 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Leucine at position 171 (H171L)

Ref Sequence

ENSEMBL: ENSMUSP00000135726 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000068264] [ENSMUST00000102878] [ENSMUST00000144988] [ENSMUST00000177417] [ENSMUST00000185131]

AlphaFold

Q60954

Predicted Effect

probably damaging
Transcript: ENSMUST00000068264
AA Change: H171L

PolyPhen 2 Score 0.965 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000069277
Gene: ENSMUSG00000020160
AA Change: H171L

Domain	Start	End	E-Value	Type
low complexity region	225	241	N/A	INTRINSIC
HOX	272	337	1.05e-11	SMART
low complexity region	372	385	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000102878
AA Change: H171L

PolyPhen 2 Score 0.989 (Sensitivity: 0.72; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000099942
Gene: ENSMUSG00000020160
AA Change: H171L

Domain	Start	End	E-Value	Type
internal_repeat_1	12	59	8.66e-5	PROSPERO
Pfam:Meis_PKNOX_N	108	192	5.5e-48	PFAM
low complexity region	225	241	N/A	INTRINSIC
HOX	272	337	1.05e-11	SMART
internal_repeat_1	384	428	8.66e-5	PROSPERO

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000117191

SMART Domains

Protein: ENSMUSP00000113121
Gene: ENSMUSG00000084085

Domain	Start	End	E-Value	Type
low complexity region	48	64	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000118661

SMART Domains

Protein: ENSMUSP00000112809
Gene: ENSMUSG00000020160

Domain	Start	End	E-Value	Type
low complexity region	45	61	N/A	INTRINSIC
HOX	92	157	5.3e-14	SMART
low complexity region	192	205	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000125722

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137300

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000143706

Predicted Effect

probably damaging
Transcript: ENSMUST00000144988
AA Change: H171L

PolyPhen 2 Score 0.965 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000134969
Gene: ENSMUSG00000020160
AA Change: H171L

Domain	Start	End	E-Value	Type
low complexity region	225	241	N/A	INTRINSIC
HOX	272	337	1.05e-11	SMART
low complexity region	358	369	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000152073

Predicted Effect

unknown
Transcript: ENSMUST00000177357
AA Change: H143L

Predicted Effect

probably damaging
Transcript: ENSMUST00000177417
AA Change: H171L

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000135726
Gene: ENSMUSG00000020160
AA Change: H171L

Domain	Start	End	E-Value	Type
low complexity region	225	241	N/A	INTRINSIC
HOX	272	337	1.05e-11	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000185131
AA Change: H171L

PolyPhen 2 Score 0.965 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000139219
Gene: ENSMUSG00000020160
AA Change: H171L

Domain	Start	End	E-Value	Type
internal_repeat_1	12	59	8.66e-5	PROSPERO
low complexity region	225	241	N/A	INTRINSIC
HOX	272	337	1.05e-11	SMART
internal_repeat_1	384	428	8.66e-5	PROSPERO

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000193315

Meta Mutation Damage Score

0.8748

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.8%
20x: 94.1%

Validation Efficiency

98% (119/121)

MGI Phenotype

PHENOTYPE: Homozygous mutant mice die during gestation and exhibit eye, vasculature, and hematopoietic defects. Mice homozygous for a conditional allele activated in HSCs exhibit altered bone marrow cell development, altered HSC physiology and increased reactive oxygen species production. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 117 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca13	T	C	11: 9,291,058	Y974H	probably benign	Het
Abca2	G	T	2: 25,434,894	G300V	probably benign	Het
Abi1	A	G	2: 22,962,504		probably benign	Het
Actr10	T	A	12: 70,959,964	Y332N	probably damaging	Het
Adam25	G	T	8: 40,755,224	C509F	probably damaging	Het
Adck1	A	T	12: 88,371,691		probably benign	Het
Adgra3	A	G	5: 50,009,334		probably null	Het
Adgrl1	G	T	8: 83,934,650		probably benign	Het
Akr1c21	A	G	13: 4,576,307	Y110C	probably damaging	Het
Arhgef25	T	C	10: 127,183,697	I463V	probably null	Het
Atp6v1e2	C	T	17: 86,944,578	V131M	probably benign	Het
Bdnf	A	G	2: 109,675,343		probably null	Het
C7	A	T	15: 4,994,142		probably benign	Het
Cdc27	T	C	11: 104,528,288	T273A	probably benign	Het
Cdo1	T	A	18: 46,715,611	I187F	probably benign	Het
Cep104	A	T	4: 153,996,304	T742S	probably benign	Het
Ckm	A	T	7: 19,419,452	K223*	probably null	Het
Cmtr1	C	T	17: 29,676,285	P586L	probably benign	Het
Csmd1	C	T	8: 15,992,758	R2325Q	probably damaging	Het
Dcpp1	A	T	17: 23,882,594	I106L	possibly damaging	Het
Diaph3	A	C	14: 87,090,964		probably benign	Het
Dnah11	A	G	12: 118,106,510	V1520A	probably damaging	Het
Dnajc25	T	A	4: 59,020,438	M168K		Het
Dpp3	T	C	19: 4,914,654	N542D	probably damaging	Het
Ebf2	A	T	14: 67,371,736	K199*	probably null	Het
Efcab11	T	A	12: 99,719,035	Q160L	probably benign	Het
Eif2ak4	T	A	2: 118,431,036	S686T	probably benign	Het
Epha6	C	T	16: 60,205,732	S449N	possibly damaging	Het
Ercc4	T	C	16: 13,126,467	V329A	probably benign	Het
Faf1	T	C	4: 109,840,403	F309L	possibly damaging	Het
Fam102b	T	C	3: 108,980,204	E248G	probably benign	Het
G6pd2	C	A	5: 61,809,567	D228E	probably benign	Het
Ggt1	T	G	10: 75,585,957	V546G	probably damaging	Het
Gm14139	T	A	2: 150,193,080	C471*	probably null	Het
Gpatch4	G	T	3: 88,051,217	V3F	probably damaging	Het
Gprin3	A	G	6: 59,353,387	L645P	probably damaging	Het
Hyal2	A	G	9: 107,572,071	Y342C	probably benign	Het
Igf2bp2	A	G	16: 22,089,099	I16T	possibly damaging	Het
Inca1	T	C	11: 70,690,199	Y61C	probably damaging	Het
Ipo5	T	C	14: 120,942,733	W860R	possibly damaging	Het
Kcnj9	C	T	1: 172,323,024	A341T	probably benign	Het
Kdm5b	T	C	1: 134,602,571	V440A	probably damaging	Het
L3mbtl1	C	T	2: 162,947,335		probably benign	Het
Lin54	G	A	5: 100,452,293	T307I	probably damaging	Het
Lrrc18	C	A	14: 33,009,139	Q212K	probably benign	Het
Lrrc37a	A	G	11: 103,503,025	S525P	probably benign	Het
Lrrc71	T	A	3: 87,745,699	S137C	probably damaging	Het
Lrrk1	A	T	7: 66,290,908		probably null	Het
Man2b2	G	A	5: 36,816,198	S58L	probably benign	Het
Masp1	T	A	16: 23,458,138	H539L	probably benign	Het
Med1	G	A	11: 98,156,904	P1022L	probably damaging	Het
Mier1	T	A	4: 103,155,623		probably benign	Het
Mkl2	C	T	16: 13,412,526	T1025I	possibly damaging	Het
Mmp13	A	T	9: 7,272,929	R96S	probably damaging	Het
Mms19	G	A	19: 41,953,734	T38I	probably damaging	Het
Mrc1	G	A	2: 14,310,032	C976Y	probably damaging	Het
Naalad2	A	G	9: 18,385,895	Y32H	probably benign	Het
Ndufs1	A	G	1: 63,143,926		probably benign	Het
Nefm	C	T	14: 68,124,159	D219N	probably damaging	Het
Nwd1	C	T	8: 72,662,337	P172L	probably damaging	Het
Nwd2	T	A	5: 63,805,111	D679E	probably damaging	Het
Ogdh	T	A	11: 6,339,936		probably benign	Het
Olfm3	T	A	3: 115,122,681	S421T	possibly damaging	Het
Olfr1281	A	T	2: 111,329,328	N303I	probably benign	Het
Olfr1445	T	C	19: 12,884,079	L66P	probably damaging	Het
Olfr1445	A	G	19: 12,884,546	T222A	probably damaging	Het
Olfr559	T	A	7: 102,724,029	I154F	probably damaging	Het
Olfr628	T	C	7: 103,732,376	V150A	probably benign	Het
Olfr988	A	G	2: 85,353,749	M59T	possibly damaging	Het
Opn5	T	G	17: 42,592,953	T164P	possibly damaging	Het
Pde7b	C	T	10: 20,438,746	V166M	probably damaging	Het
Pik3ap1	T	C	19: 41,324,564	N370S	probably damaging	Het
Pkhd1l1	A	T	15: 44,589,418	D3913V	probably damaging	Het
Pld1	A	G	3: 28,120,822	I90V	possibly damaging	Het
Plxna2	A	G	1: 194,644,348	T197A	possibly damaging	Het
Plxna4	A	T	6: 32,202,119	M987K	probably benign	Het
Pmch	A	G	10: 88,091,359	N75D	probably benign	Het
Prom2	T	A	2: 127,532,867	Q583L	possibly damaging	Het
Pyroxd1	T	A	6: 142,353,562	M148K	possibly damaging	Het
R3hdm2	C	T	10: 127,457,700	L158F	probably damaging	Het
Rapgef6	A	T	11: 54,625,963	T349S	probably benign	Het
Rfx5	C	T	3: 94,956,355	T105I	probably damaging	Het
Rif1	C	A	2: 52,110,737	P1401Q	probably damaging	Het
Robo3	G	A	9: 37,416,759		probably benign	Het
Rpn1	T	A	6: 88,090,242	S195T	probably benign	Het
Rslcan18	C	A	13: 67,102,119	K17N	probably benign	Het
Rsph3b	A	T	17: 6,941,727	I48N	probably damaging	Het
Sbf2	A	T	7: 110,399,343	Y628N	probably damaging	Het
Sis	T	C	3: 72,960,296	T139A	probably benign	Het
Slc22a14	A	G	9: 119,172,034		probably benign	Het
Slitrk6	A	T	14: 110,749,932	L781H	probably damaging	Het
Smarcb1	T	C	10: 75,897,066	T372A	probably damaging	Het
Spidr	T	A	16: 16,037,667	H328L	probably damaging	Het
Sun5	T	A	2: 153,870,952	D16V	probably damaging	Het
Syde2	G	A	3: 146,014,380	E1053K	possibly damaging	Het
Syne2	T	C	12: 76,099,464	S6419P	probably damaging	Het
Tenm3	G	A	8: 48,341,160		probably benign	Het
Timm44	C	A	8: 4,260,532	E407*	probably null	Het
Tmem189	A	T	2: 167,644,987		probably benign	Het
Tnpo2	A	G	8: 85,047,362	T342A	probably benign	Het
Trio	A	G	15: 27,767,907	C1964R	probably benign	Het
Trip11	A	C	12: 101,885,672	L711R	probably damaging	Het
Trp53bp1	A	T	2: 121,269,969	H101Q	probably damaging	Het
Trpm6	A	G	19: 18,873,902		probably benign	Het
Ttn	A	T	2: 76,849,991		probably benign	Het
Ucp1	T	A	8: 83,295,307	M256K	possibly damaging	Het
Uhrf1bp1l	T	C	10: 89,791,443	S145P	probably damaging	Het
Unc5a	T	A	13: 55,004,954	S838T	probably damaging	Het
Uxs1	T	C	1: 43,764,886		probably null	Het
Vmn2r108	A	T	17: 20,462,834	C703S	possibly damaging	Het
Zc3hav1	C	T	6: 38,332,664	G408R	probably damaging	Het
Zfp609	G	A	9: 65,703,462	L740F	possibly damaging	Het
Zfp69	T	C	4: 120,931,095	E341G	probably damaging	Het
Zfp707	A	T	15: 75,975,256	H312L	probably damaging	Het
Zfp773	T	C	7: 7,133,024	D191G	probably benign	Het
Zgrf1	C	A	3: 127,573,238	D755E	probably benign	Het
Zscan5b	T	A	7: 6,239,075	I431N	probably damaging	Het

Other mutations in Meis1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01927:Meis1	APN	11	18881811	missense	probably benign	0.25
IGL02156:Meis1	APN	11	19011292	missense	probably benign	0.03
IGL02376:Meis1	APN	11	18881752	missense	probably benign	0.06
R0833:Meis1	UTSW	11	18881767	missense	possibly damaging	0.91
R1477:Meis1	UTSW	11	18881665	nonsense	probably null
R1512:Meis1	UTSW	11	18881682	missense	probably damaging	0.97
R1643:Meis1	UTSW	11	19016278	missense	probably benign	0.00
R1717:Meis1	UTSW	11	19010608	intron	probably benign
R2117:Meis1	UTSW	11	18881679	missense	probably damaging	1.00
R2342:Meis1	UTSW	11	18881647	missense	probably damaging	1.00
R2426:Meis1	UTSW	11	18988356	missense	possibly damaging	0.64
R3076:Meis1	UTSW	11	19011254	missense	probably benign	0.01
R3078:Meis1	UTSW	11	19011254	missense	probably benign	0.01
R4368:Meis1	UTSW	11	19010656	intron	probably benign
R4915:Meis1	UTSW	11	19009222	intron	probably benign
R4916:Meis1	UTSW	11	18881776	missense	possibly damaging	0.91
R4917:Meis1	UTSW	11	19009222	intron	probably benign
R4918:Meis1	UTSW	11	19009222	intron	probably benign
R4948:Meis1	UTSW	11	19016308	missense	probably benign	0.00
R5093:Meis1	UTSW	11	18881785	missense	probably benign	0.13
R5506:Meis1	UTSW	11	18941747	missense	possibly damaging	0.52
R5507:Meis1	UTSW	11	19016168	missense	probably benign	0.27
R5521:Meis1	UTSW	11	18988260	splice site	probably benign
R5673:Meis1	UTSW	11	19012812	missense	probably damaging	1.00
R5813:Meis1	UTSW	11	19016229	missense	probably benign	0.11
R6347:Meis1	UTSW	11	18905631	splice site	probably null
R6354:Meis1	UTSW	11	19016184	missense	possibly damaging	0.89
R6383:Meis1	UTSW	11	18941741	missense	probably benign
R6624:Meis1	UTSW	11	19016215	missense	probably benign
R7292:Meis1	UTSW	11	19011351	missense	probably damaging	1.00
R7413:Meis1	UTSW	11	18988357	missense	probably damaging	1.00
R7434:Meis1	UTSW	11	18885542	missense	unknown
R7571:Meis1	UTSW	11	18941702	missense	probably damaging	1.00
R8719:Meis1	UTSW	11	18885587	missense	probably benign
R9013:Meis1	UTSW	11	19016354	missense	probably benign	0.00
R9043:Meis1	UTSW	11	18881916	missense	possibly damaging	0.58
R9410:Meis1	UTSW	11	18883987	critical splice donor site	probably null
R9571:Meis1	UTSW	11	19011378	missense	probably damaging	1.00
Z1176:Meis1	UTSW	11	19014317	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- GGTGGTGACCCAGCAAGCAATATG -3'
(R):5'- GTTTACCTTAAGTGTCCCCACGCAG -3'

Sequencing Primer
(F):5'- AAGTCGCATACCTGGTCAGT -3'
(R):5'- ATGTTGTCGCCTGTGAATCAATC -3'

Posted On

2014-05-08