Mutagenetix > Incidental Mutations

Incidental Mutation 'R1462:Sytl3'

186350

Institutional Source

Beutler Lab

Gene Symbol

Sytl3

Ensembl Gene

ENSMUSG00000041831

Gene Name

synaptotagmin-like 3

Synonyms

Slp3-b, Slp3-a, Slp3

MMRRC Submission

039516-MU

Accession Numbers

Is this an essential gene?

Possibly essential (E-score: 0.594) question?

Stock #

R1462 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

6659093-6738044 bp(+) (GRCm38)

Type of Mutation

splice site

DNA Base Change (assembly)

A to G at 6706031 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000124496 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000097430] [ENSMUST00000115763] [ENSMUST00000159394] [ENSMUST00000159880] [ENSMUST00000160483] [ENSMUST00000161118] [ENSMUST00000162635]

AlphaFold

Q99N48

Predicted Effect

probably benign
Transcript: ENSMUST00000097430

SMART Domains

Protein: ENSMUSP00000095041
Gene: ENSMUSG00000041831

Domain	Start	End	E-Value	Type
Pfam:FYVE_2	8	124	6e-25	PFAM
low complexity region	162	170	N/A	INTRINSIC
C2	321	426	9.17e-15	SMART
C2	478	601	1.92e-8	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000115763

SMART Domains

Protein: ENSMUSP00000111429
Gene: ENSMUSG00000041831

Domain	Start	End	E-Value	Type
Pfam:FYVE_2	8	124	4.3e-27	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000159394

SMART Domains

Protein: ENSMUSP00000124146
Gene: ENSMUSG00000041831

Domain	Start	End	E-Value	Type
Pfam:FYVE_2	8	124	3.6e-17	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000159880

SMART Domains

Protein: ENSMUSP00000125469
Gene: ENSMUSG00000041831

Domain	Start	End	E-Value	Type
C2	116	221	9.17e-15	SMART
C2	273	396	1.92e-8	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000160483

SMART Domains

Protein: ENSMUSP00000123996
Gene: ENSMUSG00000041831

Domain	Start	End	E-Value	Type
C2	126	231	9.17e-15	SMART
C2	283	406	1.92e-8	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000160771

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000161118

Predicted Effect

probably benign
Transcript: ENSMUST00000162635

SMART Domains

Protein: ENSMUSP00000124496
Gene: ENSMUSG00000041831

Domain	Start	End	E-Value	Type
Pfam:FYVE_2	8	124	4.3e-27	PFAM
low complexity region	158	176	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000231743

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000232362

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.0%
20x: 92.0%

Validation Efficiency

99% (83/84)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to a family of peripheral membrane proteins that play a role in vesicular trafficking. This protein binds phospholipids in the presence of calcium ions. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2016]

Allele List at MGI

Other mutations in this stock

Total: 83 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930433I11Rik	C	A	7: 40,992,946	S104*	probably null	Het
A430093F15Rik	A	T	19: 10,785,481		probably benign	Het
Abca13	T	A	11: 9,483,924		probably benign	Het
Abca9	T	C	11: 110,160,516	D118G	probably benign	Het
AC239677.1	T	A	5: 25,951,625	I119F	possibly damaging	Het
Adamts16	A	G	13: 70,836,134	F137L	probably benign	Het
Adamts3	T	C	5: 89,861,349	I152V	probably benign	Het
Adcy4	T	A	14: 55,778,308	E441D	possibly damaging	Het
Adgra1	T	A	7: 139,875,829	Y458N	probably damaging	Het
Atpaf1	C	T	4: 115,784,953		probably benign	Het
Bhlhe22	C	G	3: 18,055,782	S332C	probably damaging	Het
Card19	T	A	13: 49,205,284	Q71L	probably benign	Het
Ccdc12	T	C	9: 110,656,594	L11P	probably damaging	Het
Ccdc129	A	G	6: 55,975,664	H864R	probably damaging	Het
Cdadc1	A	G	14: 59,575,858	Y367H	probably damaging	Het
Cdc5l	G	T	17: 45,408,362	Q542K	possibly damaging	Het
Cep170	T	C	1: 176,756,645	K723E	possibly damaging	Het
Cep70	A	G	9: 99,263,720	I147V	probably benign	Het
Cfap58	A	T	19: 47,962,430	H410L	probably damaging	Het
Chat	T	C	14: 32,420,778	K418R	probably damaging	Het
Cic	T	G	7: 25,271,607	D254E	probably damaging	Het
Ckap4	T	C	10: 84,527,567	E544G	probably damaging	Het
Crnkl1	C	T	2: 145,921,819	A500T	probably damaging	Het
Cyp2c38	T	C	19: 39,392,188	N418D	probably damaging	Het
Daam1	A	T	12: 71,944,142	I177L	unknown	Het
Dnah1	T	C	14: 31,268,781		probably benign	Het
Ercc5	A	G	1: 44,180,624	T1019A	probably damaging	Het
F13b	T	A	1: 139,507,636	V173E	probably damaging	Het
Fam126a	A	G	5: 23,985,732		probably benign	Het
Fam135b	A	G	15: 71,621,996		probably benign	Het
Fam20a	A	C	11: 109,677,317	F316V	probably damaging	Het
Flrt2	T	C	12: 95,779,338	V150A	probably damaging	Het
Fnta	A	C	8: 25,999,571		probably null	Het
Ghsr	A	G	3: 27,371,876	D27G	probably benign	Het
Glis3	G	T	19: 28,262,518		probably benign	Het
Gm5155	T	G	7: 17,915,591		noncoding transcript	Het
Gtpbp1	A	G	15: 79,707,885	N96D	probably damaging	Het
H1fnt	A	T	15: 98,256,573	W232R	unknown	Het
Ibtk	A	T	9: 85,724,145	I443N	probably damaging	Het
Ifi207	T	C	1: 173,724,947	H968R	probably damaging	Het
Ifit2	A	G	19: 34,573,186	D42G	probably null	Het
Il17rc	A	T	6: 113,478,989	D265V	probably damaging	Het
Ints10	G	A	8: 68,807,644		probably benign	Het
Itfg2	T	C	6: 128,424,728	D29G	probably damaging	Het
Kcng3	A	T	17: 83,631,063	C186S	probably damaging	Het
Lrrc1	A	G	9: 77,442,265	F295L	probably benign	Het
Mrps28	T	A	3: 8,900,124	H85L	possibly damaging	Het
Mtpn	T	A	6: 35,522,758	K37M	possibly damaging	Het
Mug1	C	T	6: 121,882,629	H1196Y	probably benign	Het
Mup4	T	C	4: 59,960,084	H60R	possibly damaging	Het
Musk	A	G	4: 58,286,204		probably benign	Het
Mybl2	T	C	2: 163,072,708	S249P	probably benign	Het
Naip6	A	G	13: 100,300,240	Y592H	possibly damaging	Het
Nrp1	A	G	8: 128,502,798	N919S	probably benign	Het
Nudt9	C	T	5: 104,065,038	Q326*	probably null	Het
Olfr1136	A	T	2: 87,693,376	C169S	probably damaging	Het
Olfr813	A	G	10: 129,857,231	T238A	probably damaging	Het
Olfr827	T	A	10: 130,210,723	I136F	probably benign	Het
Olfr829	T	A	9: 18,857,111	M162K	probably benign	Het
Pcsk4	T	C	10: 80,325,981	E142G	probably damaging	Het
Pde3a	C	A	6: 141,459,834	P471T	probably benign	Het
Pign	A	T	1: 105,585,002	V652E	possibly damaging	Het
Prkcb	T	A	7: 122,582,449	M420K	probably damaging	Het
Prr14	T	A	7: 127,473,988		probably null	Het
Rchy1	T	A	5: 91,957,882	Q69L	probably damaging	Het
Sccpdh	A	C	1: 179,681,560		probably benign	Het
Sec23ip	T	G	7: 128,766,138	S625A	probably benign	Het
Smpdl3b	A	G	4: 132,746,614	S47P	probably damaging	Het
Stil	G	A	4: 115,023,964	M568I	probably benign	Het
Syt3	T	A	7: 44,396,010	V558E	probably damaging	Het
Szt2	A	G	4: 118,373,967	V2533A	unknown	Het
Tenm4	A	G	7: 96,704,153	Y384C	probably damaging	Het
Tfam	T	C	10: 71,235,550	E94G	probably damaging	Het
Tmbim7	A	G	5: 3,664,304	T14A	probably damaging	Het
Tmtc2	A	T	10: 105,573,705	Y15*	probably null	Het
Uhrf1	C	T	17: 56,318,035	A526V	probably damaging	Het
Vmn2r67	T	C	7: 85,155,838	D22G	probably benign	Het
Vmn2r96	A	G	17: 18,597,398	I412M	possibly damaging	Het
Vmn2r-ps69	T	A	7: 85,310,352		noncoding transcript	Het
Wdr17	A	T	8: 54,670,328	I479K	probably damaging	Het
Wt1	T	C	2: 105,166,831	V371A	probably damaging	Het
Zfp536	G	T	7: 37,479,310	S226Y	probably damaging	Het
Zfp827	T	C	8: 79,076,479	V560A	probably benign	Het

Other mutations in Sytl3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01626:Sytl3	APN	17	6735440	missense	probably damaging	1.00
IGL02888:Sytl3	APN	17	6733084	missense	probably benign
IGL02893:Sytl3	APN	17	6732974	missense	probably damaging	1.00
R1469:Sytl3	UTSW	17	6687324	missense	probably benign	0.17
R1469:Sytl3	UTSW	17	6687324	missense	probably benign	0.17
R1735:Sytl3	UTSW	17	6715481	missense	probably benign	0.10
R1765:Sytl3	UTSW	17	6699683	missense	probably damaging	0.98
R1834:Sytl3	UTSW	17	6728327	missense	probably benign	0.05
R1933:Sytl3	UTSW	17	6733046	missense	probably damaging	1.00
R1952:Sytl3	UTSW	17	6728333	missense	probably damaging	1.00
R1992:Sytl3	UTSW	17	6733049	missense	possibly damaging	0.79
R2279:Sytl3	UTSW	17	6708874	intron	probably benign
R2411:Sytl3	UTSW	17	6736493	missense	probably damaging	1.00
R4019:Sytl3	UTSW	17	6736493	missense	probably damaging	1.00
R4853:Sytl3	UTSW	17	6737765	missense	probably damaging	0.97
R4857:Sytl3	UTSW	17	6736581	missense	probably damaging	1.00
R5169:Sytl3	UTSW	17	6715546	nonsense	probably null
R5485:Sytl3	UTSW	17	6715480	missense	probably benign	0.03
R6035:Sytl3	UTSW	17	6728265	missense	probably damaging	1.00
R6035:Sytl3	UTSW	17	6728265	missense	probably damaging	1.00
R7540:Sytl3	UTSW	17	6681947	intron	probably benign
R7792:Sytl3	UTSW	17	6736578	missense	probably benign	0.45
R7836:Sytl3	UTSW	17	6715375	splice site	probably null
R8508:Sytl3	UTSW	17	6728291	missense	probably damaging	0.99
R8836:Sytl3	UTSW	17	6706011	missense	possibly damaging	0.68
R9173:Sytl3	UTSW	17	6733072	missense	probably damaging	0.96

Predicted Primers

Posted On

2014-05-09