Incidental Mutation 'R1657:Snap47'
ID 186478
Institutional Source Beutler Lab
Gene Symbol Snap47
Ensembl Gene ENSMUSG00000009894
Gene Name synaptosomal-associated protein, 47
Synonyms SNAP-47, 1110031B06Rik
MMRRC Submission 039693-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R1657 (G1)
Quality Score 225
Status Not validated
Chromosome 11
Chromosomal Location 59407134-59451186 bp(-) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) A to T at 59428770 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Serine to Threonine at position 181 (S181T)
Ref Sequence ENSEMBL: ENSMUSP00000010038 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000010038] [ENSMUST00000120940] [ENSMUST00000136436] [ENSMUST00000156146]
AlphaFold Q8R570
Predicted Effect probably benign
Transcript: ENSMUST00000010038
AA Change: S181T

PolyPhen 2 Score 0.079 (Sensitivity: 0.93; Specificity: 0.85)
SMART Domains Protein: ENSMUSP00000010038
Gene: ENSMUSG00000009894
AA Change: S181T

DomainStartEndE-ValueType
coiled coil region 125 173 N/A INTRINSIC
SCOP:d1fpza_ 181 234 3e-3 SMART
low complexity region 335 349 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000120940
AA Change: S181T

PolyPhen 2 Score 0.016 (Sensitivity: 0.95; Specificity: 0.79)
SMART Domains Protein: ENSMUSP00000113555
Gene: ENSMUSG00000009894
AA Change: S181T

DomainStartEndE-ValueType
coiled coil region 125 173 N/A INTRINSIC
SCOP:d1fpza_ 181 234 3e-3 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000136436
AA Change: S181T

PolyPhen 2 Score 0.019 (Sensitivity: 0.95; Specificity: 0.80)
SMART Domains Protein: ENSMUSP00000115762
Gene: ENSMUSG00000009894
AA Change: S181T

DomainStartEndE-ValueType
coiled coil region 125 173 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000156146
AA Change: S181T

PolyPhen 2 Score 0.009 (Sensitivity: 0.96; Specificity: 0.77)
SMART Domains Protein: ENSMUSP00000121880
Gene: ENSMUSG00000009894
AA Change: S181T

DomainStartEndE-ValueType
coiled coil region 125 173 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.4%
  • 10x: 96.5%
  • 20x: 93.2%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 55 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
0610009B22Rik T C 11: 51,685,678 (GRCm38) Q131R probably benign Het
3632451O06Rik G C 14: 49,773,560 (GRCm38) T230S probably damaging Het
Acaca T G 11: 84,264,084 (GRCm38) D988E probably benign Het
Als2 A G 1: 59,180,601 (GRCm38) V1185A probably damaging Het
Amdhd2 A G 17: 24,156,055 (GRCm38) V391A probably damaging Het
Caprin1 A T 2: 103,769,506 (GRCm38) V608E probably damaging Het
Celsr3 T A 9: 108,842,952 (GRCm38) C2512* probably null Het
Cfl1 A T 19: 5,493,555 (GRCm38) R187W probably damaging Het
Cgnl1 C T 9: 71,725,944 (GRCm38) V42I probably damaging Het
Chd2 A G 7: 73,480,430 (GRCm38) Y826H probably damaging Het
Col9a2 C A 4: 121,040,974 (GRCm38) P28T unknown Het
Cyp3a44 G A 5: 145,779,743 (GRCm38) P346S probably damaging Het
Dact2 A G 17: 14,197,990 (GRCm38) V151A probably benign Het
Dhx29 T C 13: 112,952,843 (GRCm38) I716T probably damaging Het
Esam T C 9: 37,537,621 (GRCm38) S342P probably damaging Het
Fam189a2 C A 19: 23,975,635 (GRCm38) C437F probably damaging Het
Fer1l4 A G 2: 156,035,598 (GRCm38) V1053A possibly damaging Het
Grk3 A G 5: 112,966,982 (GRCm38) F124S probably damaging Het
H2-DMa G A 17: 34,137,399 (GRCm38) probably null Het
Hsd3b5 T A 3: 98,619,720 (GRCm38) I137F possibly damaging Het
Itgav A T 2: 83,801,779 (GRCm38) I902F probably benign Het
Itsn1 G T 16: 91,909,223 (GRCm38) C179F probably damaging Het
Kcnh8 G A 17: 52,839,125 (GRCm38) R347H probably damaging Het
Kif9 T C 9: 110,489,966 (GRCm38) M166T possibly damaging Het
Kmt5c C T 7: 4,746,454 (GRCm38) Q324* probably null Het
Lcn9 G A 2: 25,824,710 (GRCm38) E154K probably benign Het
Mfge8 A T 7: 79,141,773 (GRCm38) L227Q probably benign Het
Mroh2b A T 15: 4,931,043 (GRCm38) R753* probably null Het
Mtif2 G A 11: 29,540,721 (GRCm38) R475Q probably benign Het
Nln C T 13: 104,036,947 (GRCm38) V584I possibly damaging Het
Nr2e3 T C 9: 59,948,767 (GRCm38) E129G probably benign Het
Ocstamp T C 2: 165,397,516 (GRCm38) D250G probably damaging Het
Olfr1065 A C 2: 86,445,218 (GRCm38) L255V probably damaging Het
Olfr403 A T 11: 74,195,896 (GRCm38) H131L probably damaging Het
Olfr503 T C 7: 108,545,377 (GRCm38) I284T possibly damaging Het
Pld1 A T 3: 28,071,187 (GRCm38) I417L probably benign Het
Polr1a A T 6: 71,941,535 (GRCm38) K692N probably damaging Het
Qsox2 A T 2: 26,220,747 (GRCm38) Y152* probably null Het
Rpap1 T C 2: 119,783,778 (GRCm38) D46G possibly damaging Het
Rpe65 A G 3: 159,614,448 (GRCm38) T246A probably damaging Het
Scn5a T C 9: 119,562,380 (GRCm38) D82G probably damaging Het
Sema3d A G 5: 12,584,974 (GRCm38) E669G possibly damaging Het
Serpinb6c T C 13: 33,880,226 (GRCm38) N282S probably benign Het
Snx9 A C 17: 5,918,436 (GRCm38) T336P possibly damaging Het
Sphkap G A 1: 83,277,515 (GRCm38) R838* probably null Het
Terb1 A T 8: 104,488,491 (GRCm38) D284E possibly damaging Het
Tmem266 C T 9: 55,418,008 (GRCm38) A153V probably damaging Het
Ttn T C 2: 76,742,804 (GRCm38) E25915G possibly damaging Het
Tubal3 A G 13: 3,933,011 (GRCm38) T264A possibly damaging Het
Vldlr G A 19: 27,245,670 (GRCm38) R747Q probably benign Het
Zc3h8 G T 2: 128,929,957 (GRCm38) probably benign Het
Zfp184 C T 13: 21,959,273 (GRCm38) T383M probably damaging Het
Zfp455 T C 13: 67,198,639 (GRCm38) F38S possibly damaging Het
Zfp746 A G 6: 48,082,174 (GRCm38) V167A possibly damaging Het
Zfp985 T A 4: 147,584,110 (GRCm38) N478K probably benign Het
Other mutations in Snap47
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01777:Snap47 APN 11 59,421,651 (GRCm38) critical splice acceptor site probably null
IGL02113:Snap47 APN 11 59,428,436 (GRCm38) missense probably damaging 0.99
IGL03290:Snap47 APN 11 59,428,598 (GRCm38) missense probably damaging 1.00
R0126:Snap47 UTSW 11 59,437,987 (GRCm38) missense probably damaging 0.99
R0582:Snap47 UTSW 11 59,428,433 (GRCm38) nonsense probably null
R0633:Snap47 UTSW 11 59,428,613 (GRCm38) missense probably benign 0.25
R0883:Snap47 UTSW 11 59,438,500 (GRCm38) utr 5 prime probably benign
R1855:Snap47 UTSW 11 59,428,333 (GRCm38) unclassified probably benign
R2761:Snap47 UTSW 11 59,438,059 (GRCm38) missense probably benign 0.01
R4079:Snap47 UTSW 11 59,428,551 (GRCm38) missense probably benign 0.38
R4805:Snap47 UTSW 11 59,428,517 (GRCm38) missense possibly damaging 0.91
R4960:Snap47 UTSW 11 59,428,543 (GRCm38) missense probably damaging 1.00
R5212:Snap47 UTSW 11 59,428,352 (GRCm38) missense probably damaging 0.99
R5793:Snap47 UTSW 11 59,438,192 (GRCm38) missense probably damaging 1.00
R7243:Snap47 UTSW 11 59,428,722 (GRCm38) missense probably benign 0.04
R7603:Snap47 UTSW 11 59,428,547 (GRCm38) missense probably damaging 1.00
R7870:Snap47 UTSW 11 59,438,078 (GRCm38) missense probably benign 0.11
R8001:Snap47 UTSW 11 59,438,354 (GRCm38) missense probably benign 0.20
R9156:Snap47 UTSW 11 59,428,464 (GRCm38) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AGTGAGCTTTCCCAGCTTGGAATG -3'
(R):5'- AGCAGTCTGCTGAGAACAGCAAC -3'

Sequencing Primer
(F):5'- GGAATGAGACTCTGCTCTCTCAG -3'
(R):5'- tcgggaggcagaggcag -3'
Posted On 2014-05-09