Mutagenetix > Incidental Mutation

Incidental Mutation 'R1660:Gpc5'

186695

Institutional Source

Beutler Lab

Gene Symbol

Gpc5

Ensembl Gene

ENSMUSG00000022112

Gene Name

glypican 5

Synonyms

A230034F01Rik

MMRRC Submission

039696-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1660 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

115329647-116762591 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 115636691 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Arginine at position 458 (K458R)

Ref Sequence

ENSEMBL: ENSMUSP00000135857 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022707] [ENSMUST00000175665] [ENSMUST00000176912]

AlphaFold

Q8CAL5

Predicted Effect

probably benign
Transcript: ENSMUST00000022707
AA Change: K385R

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000022707
Gene: ENSMUSG00000022112
AA Change: K385R

Domain	Start	End	E-Value	Type
Pfam:Glypican	9	572	1.8e-182	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000175665
AA Change: K458R

PolyPhen 2 Score 0.121 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000135857
Gene: ENSMUSG00000022112
AA Change: K458R

Domain	Start	End	E-Value	Type
Pfam:Glypican	82	480	1.3e-142	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000176582

Predicted Effect

probably benign
Transcript: ENSMUST00000176912
AA Change: K458R

PolyPhen 2 Score 0.030 (Sensitivity: 0.95; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000135085
Gene: ENSMUSG00000022112
AA Change: K458R

Domain	Start	End	E-Value	Type
Pfam:Glypican	85	642	1.6e-174	PFAM

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.4%
20x: 92.9%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Cell surface heparan sulfate proteoglycans are composed of a membrane-associated protein core substituted with a variable number of heparan sulfate chains. Members of the glypican-related integral membrane proteoglycan family (GRIPS) contain a core protein anchored to the cytoplasmic membrane via a glycosyl phosphatidylinositol linkage. These proteins may play a role in the control of cell division and growth regulation. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A1cf	C	A	19: 31,870,507 (GRCm39)	S3*	probably null	Het
Adgrv1	C	T	13: 81,624,750 (GRCm39)	V3740I	probably benign	Het
Aida	T	C	1: 183,079,127 (GRCm39)	F22S	probably damaging	Het
Ankrd65	A	T	4: 155,876,528 (GRCm39)	D220V	probably damaging	Het
Antxr2	A	T	5: 98,123,209 (GRCm39)	C279*	probably null	Het
Ap3b1	T	C	13: 94,545,320 (GRCm39)	V191A	probably damaging	Het
Arhgef28	T	C	13: 98,117,884 (GRCm39)	K595E	probably benign	Het
Atp12a	A	G	14: 56,608,305 (GRCm39)	T98A	probably benign	Het
Cdcp1	A	T	9: 123,014,427 (GRCm39)	S116T	probably benign	Het
Chrm1	T	C	19: 8,656,582 (GRCm39)	F429S	possibly damaging	Het
Ckap5	C	A	2: 91,393,303 (GRCm39)	Q395K	possibly damaging	Het
Cntn4	T	A	6: 106,656,258 (GRCm39)	I853K	probably benign	Het
Cyp2g1	G	A	7: 26,509,107 (GRCm39)		probably null	Het
Dhx57	C	T	17: 80,553,157 (GRCm39)	V1257I	possibly damaging	Het
Disp1	A	T	1: 182,869,306 (GRCm39)	V1038D	probably damaging	Het
Dmxl2	A	T	9: 54,358,314 (GRCm39)	S462T	possibly damaging	Het
Dnaaf10	A	T	11: 17,177,183 (GRCm39)	E180D	probably benign	Het
Exoc3l	A	G	8: 106,019,692 (GRCm39)		probably null	Het
Fam210a	T	C	18: 68,409,167 (GRCm39)	T48A	probably benign	Het
Fbxw5	G	A	2: 25,393,286 (GRCm39)		probably null	Het
Fkbp9	T	C	6: 56,850,434 (GRCm39)	C437R	probably damaging	Het
Grik2	C	A	10: 49,120,439 (GRCm39)	G56*	probably null	Het
Igsf10	T	C	3: 59,238,706 (GRCm39)	T492A	probably damaging	Het
Kif1c	C	T	11: 70,619,223 (GRCm39)	L953F	probably damaging	Het
Lrrc51	T	C	7: 101,562,645 (GRCm39)	Y145C	probably damaging	Het
Lsmem1	GTACATACATACATACATACATACATACA	GTACATACATACATACATACATACATACATACA	12: 40,235,260 (GRCm39)		probably null	Het
Mapkbp1	A	T	2: 119,849,029 (GRCm39)	I682F	possibly damaging	Het
Mttp	A	T	3: 137,808,954 (GRCm39)	V718D	probably damaging	Het
Myt1l	T	A	12: 29,945,272 (GRCm39)	D1012E	unknown	Het
Nbn	G	A	4: 15,971,771 (GRCm39)	G301D	probably benign	Het
Ncstn	T	A	1: 171,894,339 (GRCm39)	S677C	possibly damaging	Het
Nod1	C	A	6: 54,921,218 (GRCm39)		probably null	Het
Nos1ap	A	G	1: 170,342,206 (GRCm39)	V52A	possibly damaging	Het
Or51f2	T	G	7: 102,526,863 (GRCm39)	Y179D	probably damaging	Het
Or52z14	T	A	7: 103,252,882 (GRCm39)	L7*	probably null	Het
Or5b98	T	A	19: 12,931,055 (GRCm39)	I34N	probably damaging	Het
Or5h23	T	A	16: 58,906,706 (GRCm39)	I47F	probably benign	Het
Phf13	T	C	4: 152,076,962 (GRCm39)	I77V	probably benign	Het
Pias2	A	G	18: 77,207,825 (GRCm39)	K230E	probably damaging	Het
Poli	A	G	18: 70,642,535 (GRCm39)	L469P	probably damaging	Het
Prag1	A	T	8: 36,607,177 (GRCm39)	T973S	possibly damaging	Het
Prpf40b	C	A	15: 99,203,442 (GRCm39)	H101Q	probably damaging	Het
Prss50	T	C	9: 110,691,557 (GRCm39)	V287A	possibly damaging	Het
Rbm25	C	T	12: 83,714,924 (GRCm39)		probably benign	Het
Rcor2	T	C	19: 7,246,337 (GRCm39)	V4A	probably damaging	Het
Rnf180	T	C	13: 105,407,499 (GRCm39)	T17A	probably benign	Het
Robo3	A	T	9: 37,340,440 (GRCm39)	V179E	probably damaging	Het
Sacs	T	A	14: 61,446,458 (GRCm39)	S2835T	probably damaging	Het
Serpinb3c	T	A	1: 107,199,432 (GRCm39)	H363L	probably damaging	Het
Setd1a	T	C	7: 127,395,841 (GRCm39)		probably benign	Het
Skp2	A	C	15: 9,125,201 (GRCm39)	V126G	probably benign	Het
Snph	G	A	2: 151,436,398 (GRCm39)	Q108*	probably null	Het
Snrpa1	T	A	7: 65,719,246 (GRCm39)	V144E	probably damaging	Het
Tifab	T	C	13: 56,324,248 (GRCm39)	E65G	probably damaging	Het
Tmem201	A	T	4: 149,804,032 (GRCm39)	Y468N	probably damaging	Het
Tpcn1	T	C	5: 120,687,580 (GRCm39)	N388S	possibly damaging	Het
Tssk4	A	G	14: 55,888,029 (GRCm39)	Q75R	probably null	Het
Tuba4a	T	C	1: 75,192,547 (GRCm39)	N356D	probably benign	Het
Ugt2b5	T	A	5: 87,287,477 (GRCm39)	D230V	probably benign	Het
Ush2a	T	C	1: 188,648,261 (GRCm39)	V4622A	probably benign	Het
Vmn2r11	T	G	5: 109,201,724 (GRCm39)	Y260S	possibly damaging	Het
Vmn2r89	C	A	14: 51,693,693 (GRCm39)	H348N	possibly damaging	Het
Vmn2r96	A	T	17: 18,817,988 (GRCm39)	M714L	probably benign	Het
Zbtb18	T	C	1: 177,275,329 (GRCm39)	S221P	probably benign	Het
Zfp418	A	G	7: 7,184,789 (GRCm39)	T251A	probably benign	Het
Zmynd15	A	G	11: 70,354,328 (GRCm39)	Y267C	probably damaging	Het

Other mutations in Gpc5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00419:Gpc5	APN	14	115,607,436 (GRCm39)	missense	probably damaging	1.00
IGL01298:Gpc5	APN	14	115,636,600 (GRCm39)	missense	probably benign	0.14
IGL01359:Gpc5	APN	14	115,607,162 (GRCm39)	missense	possibly damaging	0.74
IGL02354:Gpc5	APN	14	115,370,699 (GRCm39)	nonsense	probably null
IGL02361:Gpc5	APN	14	115,370,699 (GRCm39)	nonsense	probably null
IGL02982:Gpc5	APN	14	115,607,400 (GRCm39)	missense	probably damaging	1.00
IGL03120:Gpc5	APN	14	115,607,556 (GRCm39)	missense	possibly damaging	0.64
R0322:Gpc5	UTSW	14	115,636,563 (GRCm39)	missense	probably benign	0.05
R0396:Gpc5	UTSW	14	115,665,620 (GRCm39)	missense	possibly damaging	0.91
R0555:Gpc5	UTSW	14	115,789,740 (GRCm39)	missense	probably damaging	0.98
R0629:Gpc5	UTSW	14	115,789,651 (GRCm39)	missense	possibly damaging	0.94
R1536:Gpc5	UTSW	14	115,636,662 (GRCm39)	missense	probably benign	0.09
R1676:Gpc5	UTSW	14	115,607,510 (GRCm39)	missense	probably damaging	1.00
R2328:Gpc5	UTSW	14	116,025,591 (GRCm39)	missense	probably damaging	0.99
R3522:Gpc5	UTSW	14	116,761,747 (GRCm39)	missense	probably benign	0.00
R3776:Gpc5	UTSW	14	115,607,472 (GRCm39)	missense	probably benign	0.05
R3885:Gpc5	UTSW	14	115,607,472 (GRCm39)	missense	probably benign	0.05
R3889:Gpc5	UTSW	14	115,607,472 (GRCm39)	missense	probably benign	0.05
R3893:Gpc5	UTSW	14	115,607,472 (GRCm39)	missense	probably benign	0.05
R4041:Gpc5	UTSW	14	115,370,628 (GRCm39)	missense	probably damaging	1.00
R4517:Gpc5	UTSW	14	115,789,651 (GRCm39)	missense	possibly damaging	0.94
R5068:Gpc5	UTSW	14	115,654,676 (GRCm39)	makesense	probably null
R5639:Gpc5	UTSW	14	115,330,179 (GRCm39)	missense	probably benign	0.13
R5730:Gpc5	UTSW	14	116,025,726 (GRCm39)	missense	possibly damaging	0.73
R5944:Gpc5	UTSW	14	115,607,250 (GRCm39)	missense	probably benign	0.24
R6351:Gpc5	UTSW	14	115,636,612 (GRCm39)	missense	probably benign	0.01
R6557:Gpc5	UTSW	14	115,329,966 (GRCm39)	unclassified	probably benign
R6657:Gpc5	UTSW	14	115,607,610 (GRCm39)	missense	probably benign	0.01
R6714:Gpc5	UTSW	14	115,789,715 (GRCm39)	nonsense	probably null
R6751:Gpc5	UTSW	14	115,607,363 (GRCm39)	missense	probably benign	0.00
R7057:Gpc5	UTSW	14	115,370,654 (GRCm39)	missense	possibly damaging	0.64
R7142:Gpc5	UTSW	14	115,654,615 (GRCm39)	missense	probably benign	0.01
R7225:Gpc5	UTSW	14	115,789,710 (GRCm39)	missense	probably damaging	1.00
R7544:Gpc5	UTSW	14	115,665,585 (GRCm39)	missense	probably damaging	1.00
R7658:Gpc5	UTSW	14	115,665,620 (GRCm39)	missense	possibly damaging	0.91
R7695:Gpc5	UTSW	14	115,330,026 (GRCm39)	missense	unknown
R7785:Gpc5	UTSW	14	115,654,632 (GRCm39)	missense	probably benign	0.00
R8116:Gpc5	UTSW	14	115,636,637 (GRCm39)	missense	probably damaging	0.98
R8303:Gpc5	UTSW	14	115,665,667 (GRCm39)	missense	probably benign	0.01
R8983:Gpc5	UTSW	14	115,330,118 (GRCm39)	missense	unknown
RF001:Gpc5	UTSW	14	115,654,590 (GRCm39)	missense	probably benign	0.41
RF022:Gpc5	UTSW	14	115,789,688 (GRCm39)	missense	probably damaging	1.00
Z1176:Gpc5	UTSW	14	115,607,376 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ACAGACTCACTGTCCTTTCTCAGAAGA -3'
(R):5'- tccagcccATGAGCCACTACATATT -3'

Sequencing Primer
(F):5'- TTTCATGGCCTCAGGAAAGC -3'
(R):5'- TGGGCCTGTTTAATGAACACA -3'

Posted On

2014-05-09