Incidental Mutation 'R1662:Unc13d'
ID 186868
Institutional Source Beutler Lab
Gene Symbol Unc13d
Ensembl Gene ENSMUSG00000057948
Gene Name unc-13 homolog D
Synonyms Jinx, 2610108D09Rik, Munc13-4
MMRRC Submission 039698-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.132) question?
Stock # R1662 (G1)
Quality Score 154
Status Not validated
Chromosome 11
Chromosomal Location 115952921-115968787 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 115959499 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Lysine to Arginine at position 658 (K658R)
Ref Sequence ENSEMBL: ENSMUSP00000134260 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000075036] [ENSMUST00000075036] [ENSMUST00000106450] [ENSMUST00000106450] [ENSMUST00000106451] [ENSMUST00000106451] [ENSMUST00000173345] [ENSMUST00000174822] [ENSMUST00000174822]
AlphaFold B2RUP2
Predicted Effect probably null
Transcript: ENSMUST00000075036
AA Change: K658R

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000074549
Gene: ENSMUSG00000057948
AA Change: K658R

DomainStartEndE-ValueType
low complexity region 21 26 N/A INTRINSIC
C2 111 261 5.31e-11 SMART
PDB:3SWH|B 585 735 8e-6 PDB
low complexity region 738 751 N/A INTRINSIC
Pfam:Membr_traf_MHD 785 892 1.9e-25 PFAM
C2 923 1031 7.93e-10 SMART
Predicted Effect probably null
Transcript: ENSMUST00000075036
AA Change: K658R

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000074549
Gene: ENSMUSG00000057948
AA Change: K658R

DomainStartEndE-ValueType
low complexity region 21 26 N/A INTRINSIC
C2 111 261 5.31e-11 SMART
PDB:3SWH|B 585 735 8e-6 PDB
low complexity region 738 751 N/A INTRINSIC
Pfam:Membr_traf_MHD 785 892 1.9e-25 PFAM
C2 923 1031 7.93e-10 SMART
Predicted Effect probably null
Transcript: ENSMUST00000106450
AA Change: K660R

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000102058
Gene: ENSMUSG00000057948
AA Change: K660R

DomainStartEndE-ValueType
low complexity region 21 26 N/A INTRINSIC
C2 111 261 5.31e-11 SMART
PDB:3SWH|B 587 737 8e-6 PDB
low complexity region 740 753 N/A INTRINSIC
Pfam:Membr_traf_MHD 787 894 1.9e-25 PFAM
C2 925 1033 7.93e-10 SMART
Predicted Effect probably null
Transcript: ENSMUST00000106450
AA Change: K660R

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000102058
Gene: ENSMUSG00000057948
AA Change: K660R

DomainStartEndE-ValueType
low complexity region 21 26 N/A INTRINSIC
C2 111 261 5.31e-11 SMART
PDB:3SWH|B 587 737 8e-6 PDB
low complexity region 740 753 N/A INTRINSIC
Pfam:Membr_traf_MHD 787 894 1.9e-25 PFAM
C2 925 1033 7.93e-10 SMART
Predicted Effect probably null
Transcript: ENSMUST00000106451
AA Change: K660R

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000102059
Gene: ENSMUSG00000057948
AA Change: K660R

DomainStartEndE-ValueType
low complexity region 21 26 N/A INTRINSIC
C2 111 261 5.31e-11 SMART
PDB:3SWH|B 587 737 8e-6 PDB
low complexity region 740 753 N/A INTRINSIC
Pfam:Membr_traf_MHD 788 838 7.1e-10 PFAM
Pfam:Membr_traf_MHD 830 893 1.4e-15 PFAM
C2 925 1033 7.93e-10 SMART
Predicted Effect probably null
Transcript: ENSMUST00000106451
AA Change: K660R

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000102059
Gene: ENSMUSG00000057948
AA Change: K660R

DomainStartEndE-ValueType
low complexity region 21 26 N/A INTRINSIC
C2 111 261 5.31e-11 SMART
PDB:3SWH|B 587 737 8e-6 PDB
low complexity region 740 753 N/A INTRINSIC
Pfam:Membr_traf_MHD 788 838 7.1e-10 PFAM
Pfam:Membr_traf_MHD 830 893 1.4e-15 PFAM
C2 925 1033 7.93e-10 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000173345
AA Change: K660R

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000133679
Gene: ENSMUSG00000057948
AA Change: K660R

DomainStartEndE-ValueType
low complexity region 21 26 N/A INTRINSIC
C2 111 261 5.31e-11 SMART
PDB:3SWH|B 587 737 5e-6 PDB
low complexity region 740 753 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000173943
Predicted Effect probably null
Transcript: ENSMUST00000174822
AA Change: K658R

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000134260
Gene: ENSMUSG00000057948
AA Change: K658R

DomainStartEndE-ValueType
low complexity region 21 26 N/A INTRINSIC
C2 111 261 5.31e-11 SMART
PDB:3SWH|B 585 735 8e-6 PDB
low complexity region 738 751 N/A INTRINSIC
Pfam:Membr_traf_MHD 785 892 1.9e-25 PFAM
C2 923 1031 7.93e-10 SMART
Predicted Effect probably null
Transcript: ENSMUST00000174822
AA Change: K658R

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000134260
Gene: ENSMUSG00000057948
AA Change: K658R

DomainStartEndE-ValueType
low complexity region 21 26 N/A INTRINSIC
C2 111 261 5.31e-11 SMART
PDB:3SWH|B 585 735 8e-6 PDB
low complexity region 738 751 N/A INTRINSIC
Pfam:Membr_traf_MHD 785 892 1.9e-25 PFAM
C2 923 1031 7.93e-10 SMART
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.3%
  • 10x: 96.2%
  • 20x: 92.3%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that is a member of the UNC13 family, containing similar domain structure as other family members but lacking an N-terminal phorbol ester-binding C1 domain present in other Munc13 proteins. The protein appears to play a role in vesicle maturation during exocytosis and is involved in regulation of cytolytic granules secretion. Mutations in this gene are associated with familial hemophagocytic lymphohistiocytosis type 3, a genetically heterogeneous, rare autosomal recessive disorder. [provided by RefSeq, Jul 2008]
PHENOTYPE: Targeted deletion of this gene leads to defective hemostasis, abrogated thrombus formation and protection of homozygotes from ischemic stroke in the absence of intracranial bleeding. Homozygous ENU mutant mice are sensitive to infection by mouse cytomegalovirus. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 76 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
5730409E04Rik T A 4: 126,505,475 (GRCm39) M1K probably null Het
5730507C01Rik A C 12: 18,581,967 (GRCm39) R119S possibly damaging Het
Abca1 T A 4: 53,090,251 (GRCm39) probably null Het
Aff1 G A 5: 103,988,923 (GRCm39) G830D probably damaging Het
AI987944 T C 7: 41,023,873 (GRCm39) T369A possibly damaging Het
Aoah A G 13: 21,184,283 (GRCm39) probably null Het
Arhgap40 C G 2: 158,381,190 (GRCm39) C349W probably damaging Het
Atic T A 1: 71,615,286 (GRCm39) D438E probably benign Het
Barhl2 A T 5: 106,601,365 (GRCm39) M338K probably benign Het
Btd T C 14: 31,388,747 (GRCm39) V156A probably damaging Het
Catspere2 A G 1: 177,874,552 (GRCm39) K140E unknown Het
Ccdc82 T C 9: 13,262,397 (GRCm39) V319A probably damaging Het
Celsr1 G T 15: 85,915,263 (GRCm39) N903K probably damaging Het
Cenpf T A 1: 189,389,968 (GRCm39) N1288I probably damaging Het
Ciao1 G A 2: 127,086,857 (GRCm39) T252I probably benign Het
Cma2 T C 14: 56,210,573 (GRCm39) C87R probably damaging Het
Cops7a T A 6: 124,939,401 (GRCm39) R83W probably damaging Het
Cxcr6 A T 9: 123,639,613 (GRCm39) M205L possibly damaging Het
Dcc A G 18: 71,553,409 (GRCm39) L749P probably benign Het
Dync1i2 C T 2: 71,081,323 (GRCm39) T484I possibly damaging Het
Epas1 A T 17: 87,136,455 (GRCm39) K742N probably damaging Het
Evc2 A G 5: 37,506,094 (GRCm39) T138A probably benign Het
F5 T C 1: 164,035,457 (GRCm39) I1877T probably damaging Het
Fat1 T G 8: 45,406,201 (GRCm39) V984G probably benign Het
Fat4 T A 3: 39,034,928 (GRCm39) V2860D probably damaging Het
Foxn4 C T 5: 114,394,955 (GRCm39) R324Q probably benign Het
Gapdhs C T 7: 30,436,427 (GRCm39) R120H probably damaging Het
Gcnt3 T C 9: 69,941,659 (GRCm39) D303G probably benign Het
Gng11 A T 6: 4,008,066 (GRCm39) Y43F probably benign Het
Hectd4 A C 5: 121,455,308 (GRCm39) M651L probably benign Het
Ifngr2 T A 16: 91,357,484 (GRCm39) Y200N probably benign Het
Iqgap3 T C 3: 88,005,708 (GRCm39) V512A probably benign Het
Kdm2a A C 19: 4,378,240 (GRCm39) D187E probably damaging Het
Klhl8 A G 5: 104,019,911 (GRCm39) V370A probably damaging Het
Kmt2a G A 9: 44,747,967 (GRCm39) probably benign Het
Krt12 C A 11: 99,311,650 (GRCm39) V184F probably benign Het
Lrrc8c A T 5: 105,754,623 (GRCm39) I133F probably benign Het
Lsmem1 GTACATACATACATACATACATACATACA GTACATACATACATACATACATACATACATACA 12: 40,235,260 (GRCm39) probably null Het
Map1a C G 2: 121,136,889 (GRCm39) S2568R possibly damaging Het
Mbnl1 C A 3: 60,532,593 (GRCm39) Q301K probably damaging Het
Med12l A T 3: 59,001,038 (GRCm39) K724N probably damaging Het
Mroh2a A C 1: 88,169,340 (GRCm39) I672L probably benign Het
Mybph C T 1: 134,121,374 (GRCm39) P45S probably benign Het
Myo15a T A 11: 60,392,527 (GRCm39) S2157T probably damaging Het
Or14j2 G T 17: 37,886,164 (GRCm39) T50K probably damaging Het
Or1ab2 T C 8: 72,863,623 (GRCm39) V71A probably benign Het
Or2t35 T A 14: 14,407,880 (GRCm38) Y217* probably null Het
Or5h25 T C 16: 58,930,967 (GRCm39) E2G probably benign Het
Otogl A G 10: 107,634,218 (GRCm39) I1419T possibly damaging Het
Ovol1 A T 19: 5,601,667 (GRCm39) F118L probably damaging Het
Pak5 T C 2: 135,958,680 (GRCm39) D136G probably damaging Het
Pik3r2 T C 8: 71,223,250 (GRCm39) Y417C probably damaging Het
Ppp2r2a T C 14: 67,254,052 (GRCm39) N372S probably benign Het
Prss30 G T 17: 24,191,806 (GRCm39) N238K possibly damaging Het
Prss33 C A 17: 24,053,785 (GRCm39) probably null Het
Ptpn4 T C 1: 119,692,788 (GRCm39) E187G probably damaging Het
Ptprg A T 14: 12,207,357 (GRCm38) N100I probably damaging Het
Rbpms2 T C 9: 65,558,324 (GRCm39) V130A probably benign Het
Rdh7 A T 10: 127,724,481 (GRCm39) M1K probably null Het
Rtp3 A C 9: 110,815,751 (GRCm39) S205A probably benign Het
Ryr3 G T 2: 112,539,618 (GRCm39) D3207E probably damaging Het
Scn9a T A 2: 66,313,803 (GRCm39) T1972S probably benign Het
Scnn1b T C 7: 121,501,551 (GRCm39) V122A probably benign Het
Slc15a4 A G 5: 127,686,043 (GRCm39) L213S probably damaging Het
Slc27a5 T A 7: 12,725,173 (GRCm39) I425F probably damaging Het
Spata31d1b A G 13: 59,864,442 (GRCm39) D530G probably benign Het
Tcf25 T A 8: 124,108,289 (GRCm39) S115T probably benign Het
Tet2 A G 3: 133,172,613 (GRCm39) L1883P possibly damaging Het
Trim21 T A 7: 102,211,105 (GRCm39) R205* probably null Het
Ttc23 G T 7: 67,375,069 (GRCm39) probably null Het
Tut7 T C 13: 59,947,717 (GRCm39) E466G possibly damaging Het
Vmn1r43 A G 6: 89,846,572 (GRCm39) F305L possibly damaging Het
Vmn2r2 A T 3: 64,024,551 (GRCm39) C677S probably benign Het
Wnt5a T C 14: 28,240,300 (GRCm39) M150T probably benign Het
Ythdc1 G A 5: 86,975,981 (GRCm39) probably null Het
Zdbf2 A T 1: 63,343,408 (GRCm39) R596* probably null Het
Other mutations in Unc13d
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00711:Unc13d APN 11 115,965,229 (GRCm39) missense probably damaging 0.99
IGL00976:Unc13d APN 11 115,961,293 (GRCm39) missense probably damaging 1.00
IGL01630:Unc13d APN 11 115,964,692 (GRCm39) missense probably benign 0.00
IGL01761:Unc13d APN 11 115,964,695 (GRCm39) missense probably damaging 1.00
IGL01772:Unc13d APN 11 115,967,358 (GRCm39) missense possibly damaging 0.91
IGL01935:Unc13d APN 11 115,960,577 (GRCm39) missense probably benign
IGL02486:Unc13d APN 11 115,960,632 (GRCm39) splice site probably benign
IGL02503:Unc13d APN 11 115,959,628 (GRCm39) missense possibly damaging 0.82
IGL02519:Unc13d APN 11 115,961,359 (GRCm39) missense probably damaging 1.00
IGL02524:Unc13d APN 11 115,961,145 (GRCm39) missense probably damaging 1.00
IGL02634:Unc13d APN 11 115,961,382 (GRCm39) splice site probably benign
IGL02636:Unc13d APN 11 115,964,444 (GRCm39) missense probably damaging 1.00
IGL03243:Unc13d APN 11 115,958,670 (GRCm39) missense probably benign 0.34
jinx UTSW 11 115,964,249 (GRCm39) unclassified probably benign
R0033:Unc13d UTSW 11 115,959,991 (GRCm39) missense probably benign 0.00
R0084:Unc13d UTSW 11 115,954,657 (GRCm39) missense probably damaging 1.00
R0122:Unc13d UTSW 11 115,956,308 (GRCm39) missense probably benign 0.00
R0422:Unc13d UTSW 11 115,960,846 (GRCm39) critical splice donor site probably null
R0666:Unc13d UTSW 11 115,960,318 (GRCm39) splice site probably benign
R1019:Unc13d UTSW 11 115,958,900 (GRCm39) missense probably benign 0.03
R1333:Unc13d UTSW 11 115,964,381 (GRCm39) splice site probably benign
R1484:Unc13d UTSW 11 115,964,701 (GRCm39) missense possibly damaging 0.72
R1594:Unc13d UTSW 11 115,959,538 (GRCm39) missense probably benign 0.04
R1597:Unc13d UTSW 11 115,965,262 (GRCm39) missense probably benign 0.02
R1603:Unc13d UTSW 11 115,964,481 (GRCm39) missense possibly damaging 0.86
R1909:Unc13d UTSW 11 115,961,121 (GRCm39) missense probably damaging 0.99
R2015:Unc13d UTSW 11 115,959,581 (GRCm39) missense probably damaging 1.00
R2313:Unc13d UTSW 11 115,954,560 (GRCm39) missense probably damaging 1.00
R2435:Unc13d UTSW 11 115,959,514 (GRCm39) missense probably damaging 1.00
R4705:Unc13d UTSW 11 115,964,214 (GRCm39) missense possibly damaging 0.70
R4732:Unc13d UTSW 11 115,964,408 (GRCm39) missense possibly damaging 0.91
R4733:Unc13d UTSW 11 115,964,408 (GRCm39) missense possibly damaging 0.91
R4792:Unc13d UTSW 11 115,961,108 (GRCm39) missense probably damaging 1.00
R4843:Unc13d UTSW 11 115,965,085 (GRCm39) missense probably damaging 1.00
R5496:Unc13d UTSW 11 115,957,534 (GRCm39) missense probably damaging 1.00
R5571:Unc13d UTSW 11 115,954,480 (GRCm39) missense probably benign 0.00
R5589:Unc13d UTSW 11 115,960,579 (GRCm39) missense probably damaging 0.99
R5838:Unc13d UTSW 11 115,955,451 (GRCm39) missense possibly damaging 0.80
R6058:Unc13d UTSW 11 115,964,394 (GRCm39) critical splice donor site probably null
R6266:Unc13d UTSW 11 115,959,064 (GRCm39) missense probably damaging 1.00
R6807:Unc13d UTSW 11 115,957,577 (GRCm39) missense probably damaging 0.98
R7085:Unc13d UTSW 11 115,955,633 (GRCm39) missense probably benign 0.07
R7098:Unc13d UTSW 11 115,954,552 (GRCm39) missense probably damaging 1.00
R7269:Unc13d UTSW 11 115,959,056 (GRCm39) missense probably benign 0.01
R7291:Unc13d UTSW 11 115,964,876 (GRCm39) missense possibly damaging 0.79
R7453:Unc13d UTSW 11 115,958,697 (GRCm39) missense probably benign
R7486:Unc13d UTSW 11 115,965,259 (GRCm39) missense possibly damaging 0.68
R7618:Unc13d UTSW 11 115,957,547 (GRCm39) missense probably damaging 1.00
R7817:Unc13d UTSW 11 115,967,109 (GRCm39) missense probably damaging 1.00
R8290:Unc13d UTSW 11 115,958,973 (GRCm39) missense probably damaging 0.97
R8442:Unc13d UTSW 11 115,958,657 (GRCm39) missense probably damaging 0.99
R8817:Unc13d UTSW 11 115,958,998 (GRCm39) small insertion probably benign
R8818:Unc13d UTSW 11 115,958,998 (GRCm39) small insertion probably benign
R8820:Unc13d UTSW 11 115,958,998 (GRCm39) small insertion probably benign
R8821:Unc13d UTSW 11 115,958,998 (GRCm39) small insertion probably benign
R8858:Unc13d UTSW 11 115,953,618 (GRCm39) missense probably damaging 1.00
R9031:Unc13d UTSW 11 115,958,998 (GRCm39) small insertion probably benign
R9066:Unc13d UTSW 11 115,957,561 (GRCm39) missense probably benign 0.07
R9084:Unc13d UTSW 11 115,958,998 (GRCm39) small insertion probably benign
R9085:Unc13d UTSW 11 115,958,998 (GRCm39) small insertion probably benign
R9258:Unc13d UTSW 11 115,959,007 (GRCm39) small insertion probably benign
R9258:Unc13d UTSW 11 115,958,998 (GRCm39) small insertion probably benign
R9259:Unc13d UTSW 11 115,958,998 (GRCm39) small insertion probably benign
R9260:Unc13d UTSW 11 115,958,998 (GRCm39) small insertion probably benign
R9396:Unc13d UTSW 11 115,966,529 (GRCm39) critical splice donor site probably null
R9612:Unc13d UTSW 11 115,961,144 (GRCm39) nonsense probably null
R9648:Unc13d UTSW 11 115,958,998 (GRCm39) small insertion probably benign
R9649:Unc13d UTSW 11 115,958,998 (GRCm39) small insertion probably benign
R9650:Unc13d UTSW 11 115,958,998 (GRCm39) small insertion probably benign
X0027:Unc13d UTSW 11 115,960,582 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AGCTCTGGGTCTTACCATGTCAGC -3'
(R):5'- GTGGAAGCCTGTAATGTCTCCGAAC -3'

Sequencing Primer
(F):5'- TTTATAAGGCTACAGTAGACCAGG -3'
(R):5'- TCCTACAGGTTGGAGGGAC -3'
Posted On 2014-05-09