Mutagenetix > Incidental Mutation

Incidental Mutation 'R1666:Lmtk3'

187192

Institutional Source

Beutler Lab

Gene Symbol

Lmtk3

Ensembl Gene

ENSMUSG00000062044

Gene Name

lemur tyrosine kinase 3

Synonyms

AATYK3, Aatyk3

MMRRC Submission

039702-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.554) question?

Stock #

R1666 (G1)

Quality Score

222

Status

Not validated

Chromosome

Chromosomal Location

45433162-45453568 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 45443588 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Valine at position 757 (D757V)

Ref Sequence

ENSEMBL: ENSMUSP00000148041 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000072580] [ENSMUST00000120005] [ENSMUST00000209617] [ENSMUST00000209701]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000072580
AA Change: D731V

PolyPhen 2 Score 0.032 (Sensitivity: 0.95; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000072388
Gene: ENSMUSG00000062044
AA Change: D731V

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
transmembrane domain	39	61	N/A	INTRINSIC
Pfam:Pkinase	133	408	8.3e-37	PFAM
Pfam:Pkinase_Tyr	133	408	4.9e-64	PFAM
low complexity region	415	444	N/A	INTRINSIC
low complexity region	484	506	N/A	INTRINSIC
low complexity region	599	609	N/A	INTRINSIC
low complexity region	639	669	N/A	INTRINSIC
low complexity region	735	791	N/A	INTRINSIC
low complexity region	797	843	N/A	INTRINSIC
low complexity region	1081	1105	N/A	INTRINSIC
low complexity region	1116	1132	N/A	INTRINSIC
low complexity region	1196	1223	N/A	INTRINSIC
low complexity region	1225	1263	N/A	INTRINSIC
low complexity region	1345	1362	N/A	INTRINSIC
low complexity region	1384	1393	N/A	INTRINSIC
low complexity region	1407	1421	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000118564
AA Change: D757V

PolyPhen 2 Score 0.032 (Sensitivity: 0.95; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000113323
Gene: ENSMUSG00000062044
AA Change: D757V

Domain	Start	End	E-Value	Type
transmembrane domain	27	49	N/A	INTRINSIC
transmembrane domain	61	83	N/A	INTRINSIC
Pfam:Pkinase_Tyr	159	434	4.2e-64	PFAM
Pfam:Pkinase	159	436	1.3e-33	PFAM
low complexity region	441	470	N/A	INTRINSIC
low complexity region	510	532	N/A	INTRINSIC
low complexity region	625	635	N/A	INTRINSIC
low complexity region	665	695	N/A	INTRINSIC
low complexity region	761	817	N/A	INTRINSIC
low complexity region	823	869	N/A	INTRINSIC
low complexity region	1107	1131	N/A	INTRINSIC
low complexity region	1142	1158	N/A	INTRINSIC
low complexity region	1222	1249	N/A	INTRINSIC
low complexity region	1251	1289	N/A	INTRINSIC
low complexity region	1371	1388	N/A	INTRINSIC
low complexity region	1410	1419	N/A	INTRINSIC
low complexity region	1433	1447	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000120005
AA Change: D731V

PolyPhen 2 Score 0.032 (Sensitivity: 0.95; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000112592
Gene: ENSMUSG00000062044
AA Change: D731V

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
transmembrane domain	39	61	N/A	INTRINSIC
Pfam:Pkinase	133	408	8.3e-37	PFAM
Pfam:Pkinase_Tyr	133	408	4.9e-64	PFAM
low complexity region	415	444	N/A	INTRINSIC
low complexity region	484	506	N/A	INTRINSIC
low complexity region	599	609	N/A	INTRINSIC
low complexity region	639	669	N/A	INTRINSIC
low complexity region	735	791	N/A	INTRINSIC
low complexity region	797	843	N/A	INTRINSIC
low complexity region	1081	1105	N/A	INTRINSIC
low complexity region	1116	1132	N/A	INTRINSIC
low complexity region	1196	1223	N/A	INTRINSIC
low complexity region	1225	1263	N/A	INTRINSIC
low complexity region	1345	1362	N/A	INTRINSIC
low complexity region	1384	1393	N/A	INTRINSIC
low complexity region	1407	1421	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000209351

Predicted Effect

probably benign
Transcript: ENSMUST00000209617
AA Change: D757V

PolyPhen 2 Score 0.032 (Sensitivity: 0.95; Specificity: 0.82)

Predicted Effect

probably benign
Transcript: ENSMUST00000209701

Predicted Effect

probably benign
Transcript: ENSMUST00000211127

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.7%
20x: 93.6%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit pronounced behavioral abnormalities, including locomotor hyperactivity, reduced anxiety, and decreased depression-like behavior, an increased striatal dopamine turnover rate, and enhanced behavioral response to methylphenidate. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 79 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acvrl1	G	A	15: 101,035,458 (GRCm39)	R328H	probably damaging	Het
Afp	T	C	5: 90,652,927 (GRCm39)	S466P	probably damaging	Het
Arhgap45	A	G	10: 79,864,584 (GRCm39)	S879G	possibly damaging	Het
Asic1	A	G	15: 99,597,006 (GRCm39)	D556G	probably damaging	Het
Atp2a3	T	A	11: 72,869,633 (GRCm39)		probably null	Het
Brinp2	C	A	1: 158,074,128 (GRCm39)	E664D	probably damaging	Het
Cap2	C	A	13: 46,768,799 (GRCm39)	H147N	probably damaging	Het
Cd209f	G	A	8: 4,154,862 (GRCm39)	Q79*	probably null	Het
Chrna7	T	C	7: 62,861,890 (GRCm39)	Y54C	possibly damaging	Het
Clec1a	T	C	6: 129,413,967 (GRCm39)	D40G	probably benign	Het
Col11a1	A	G	3: 113,855,184 (GRCm39)	E148G	unknown	Het
Comp	A	T	8: 70,831,607 (GRCm39)		probably null	Het
Cpz	A	G	5: 35,665,460 (GRCm39)		probably null	Het
Cyfip1	T	A	7: 55,521,646 (GRCm39)	N13K	probably damaging	Het
Cyp2c50	A	T	19: 40,079,499 (GRCm39)	M198L	probably benign	Het
Deup1	A	T	9: 15,486,487 (GRCm39)	Y398N	possibly damaging	Het
Elapor1	A	G	3: 108,377,313 (GRCm39)	S434P	probably benign	Het
Epb41l4a	A	G	18: 34,054,962 (GRCm39)	L42P	probably damaging	Het
Exo1	T	C	1: 175,736,052 (GRCm39)	I812T	possibly damaging	Het
Fbxl17	A	T	17: 63,692,060 (GRCm39)		probably null	Het
Fxn	A	G	19: 24,239,377 (GRCm39)	Y172H	probably damaging	Het
Gabra6	A	G	11: 42,208,461 (GRCm39)	S124P	probably damaging	Het
Gje1	C	A	10: 14,592,551 (GRCm39)	W77L	possibly damaging	Het
Glra1	A	G	11: 55,465,225 (GRCm39)	S23P	probably damaging	Het
Gm6811	T	C	17: 21,314,529 (GRCm39)		noncoding transcript	Het
Greb1l	T	A	18: 10,501,080 (GRCm39)		probably null	Het
Greb1l	T	C	18: 10,529,708 (GRCm39)		probably null	Het
Grm6	A	T	11: 50,750,711 (GRCm39)	I625F	probably damaging	Het
Guca1a	A	G	17: 47,711,167 (GRCm39)	F60L	probably damaging	Het
Hectd1	T	A	12: 51,800,607 (GRCm39)	E2070D	possibly damaging	Het
Itga5	G	A	15: 103,256,329 (GRCm39)	T910I	probably benign	Het
Kctd10	A	G	5: 114,507,051 (GRCm39)	V142A	probably benign	Het
Kif1c	C	T	11: 70,619,223 (GRCm39)	L953F	probably damaging	Het
Lpcat1	T	C	13: 73,658,242 (GRCm39)		probably null	Het
Lrrc30	A	T	17: 67,939,200 (GRCm39)	C127S	probably benign	Het
Mc4r	A	G	18: 66,992,480 (GRCm39)	L211P	probably damaging	Het
Mgat5b	T	A	11: 116,874,474 (GRCm39)	N635K	probably benign	Het
Mms19	A	T	19: 41,940,995 (GRCm39)	M443K	possibly damaging	Het
Mroh5	T	C	15: 73,659,754 (GRCm39)	N359S	probably benign	Het
Nlrc4	G	A	17: 74,752,901 (GRCm39)	T494M	probably damaging	Het
Ntf3	T	C	6: 126,079,401 (GRCm39)	D35G	possibly damaging	Het
Or5g25	A	T	2: 85,478,157 (GRCm39)	C169*	probably null	Het
Osbpl5	T	C	7: 143,262,776 (GRCm39)	H192R	probably damaging	Het
Parp4	A	T	14: 56,861,620 (GRCm39)	K984N	possibly damaging	Het
Pdgfra	G	A	5: 75,349,681 (GRCm39)	G892D	possibly damaging	Het
Pik3c2g	A	T	6: 139,612,634 (GRCm39)		probably benign	Het
Ppcdc	T	A	9: 57,321,998 (GRCm39)	M181L	possibly damaging	Het
Pramel7	G	A	2: 87,322,747 (GRCm39)	P6S	probably damaging	Het
Prkcz	G	T	4: 155,374,208 (GRCm39)	F69L	probably damaging	Het
Prkd1	G	A	12: 50,441,709 (GRCm39)	H277Y	probably damaging	Het
Ptgs2	A	G	1: 149,977,021 (GRCm39)	Y44C	probably damaging	Het
Rbck1	T	A	2: 152,158,819 (GRCm39)	S488C	probably damaging	Het
Rbl1	T	C	2: 157,001,654 (GRCm39)	Y878C	probably damaging	Het
Rbm6	G	A	9: 107,669,055 (GRCm39)	T619I	probably benign	Het
Rp1	A	G	1: 4,420,086 (GRCm39)	I342T	probably damaging	Het
Rpn2	C	T	2: 157,136,075 (GRCm39)	T161M	possibly damaging	Het
Rufy4	G	A	1: 74,186,837 (GRCm39)	V542I	probably benign	Het
Sema5b	C	T	16: 35,478,852 (GRCm39)	P559S	probably benign	Het
Serpinb3d	A	G	1: 107,008,481 (GRCm39)	V128A	probably benign	Het
Slc35f3	T	A	8: 127,115,960 (GRCm39)	S296T	probably damaging	Het
Slco1a8	T	A	6: 141,927,775 (GRCm39)		probably null	Het
Smarca2	A	G	19: 26,624,434 (GRCm39)	I365V	possibly damaging	Het
Spdya	T	A	17: 71,885,235 (GRCm39)	C230S	probably damaging	Het
Sv2b	G	A	7: 74,856,089 (GRCm39)	A67V	probably benign	Het
Tapbpl	A	G	6: 125,207,164 (GRCm39)	V175A	probably benign	Het
Tmt1a3	A	G	15: 100,233,099 (GRCm39)	I97V	probably benign	Het
Ttn	T	C	2: 76,642,095 (GRCm39)	T13373A	probably damaging	Het
Tubb5	A	T	17: 36,147,530 (GRCm39)	N52K	probably benign	Het
Tyr	T	A	7: 87,142,149 (GRCm39)	Y137F	probably damaging	Het
Unc45b	T	A	11: 82,808,565 (GRCm39)	I217N	probably benign	Het
Vmn1r202	A	T	13: 22,685,540 (GRCm39)	D292E	possibly damaging	Het
Vmn1r22	A	G	6: 57,877,704 (GRCm39)	M91T	probably benign	Het
Washc2	T	A	6: 116,200,215 (GRCm39)		probably null	Het
Zfp566	A	T	7: 29,777,901 (GRCm39)	H93Q	probably benign	Het
Zfp740	A	G	15: 102,116,753 (GRCm39)	D56G	probably damaging	Het
Zfp804b	A	C	5: 6,821,323 (GRCm39)	L580R	possibly damaging	Het
Zmiz2	T	G	11: 6,346,836 (GRCm39)	S148R	probably benign	Het
Zmym6	T	A	4: 127,016,652 (GRCm39)	I719N	probably damaging	Het
Zyx	T	A	6: 42,332,966 (GRCm39)	V372E	possibly damaging	Het

Other mutations in Lmtk3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01365:Lmtk3	APN	7	45,440,331 (GRCm39)	missense	probably damaging	1.00
IGL01996:Lmtk3	APN	7	45,442,871 (GRCm39)	splice site	probably null
IGL02146:Lmtk3	APN	7	45,444,371 (GRCm39)	unclassified	probably benign
IGL02192:Lmtk3	APN	7	45,443,933 (GRCm39)	unclassified	probably benign
IGL02598:Lmtk3	APN	7	45,442,564 (GRCm39)	missense	probably damaging	1.00
BB006:Lmtk3	UTSW	7	45,444,572 (GRCm39)	missense	unknown
BB016:Lmtk3	UTSW	7	45,444,572 (GRCm39)	missense	unknown
R0469:Lmtk3	UTSW	7	45,443,536 (GRCm39)	missense	possibly damaging	0.95
R0510:Lmtk3	UTSW	7	45,443,536 (GRCm39)	missense	possibly damaging	0.95
R0603:Lmtk3	UTSW	7	45,444,980 (GRCm39)	unclassified	probably benign
R0781:Lmtk3	UTSW	7	45,444,427 (GRCm39)	unclassified	probably benign
R1110:Lmtk3	UTSW	7	45,444,427 (GRCm39)	unclassified	probably benign
R1270:Lmtk3	UTSW	7	45,443,252 (GRCm39)	missense	probably damaging	0.96
R1535:Lmtk3	UTSW	7	45,443,994 (GRCm39)	unclassified	probably benign
R1807:Lmtk3	UTSW	7	45,442,702 (GRCm39)	missense	probably benign	0.02
R1883:Lmtk3	UTSW	7	45,436,273 (GRCm39)	missense	probably damaging	1.00
R2060:Lmtk3	UTSW	7	45,450,335 (GRCm39)	critical splice acceptor site	probably null
R2107:Lmtk3	UTSW	7	45,443,393 (GRCm39)	missense	possibly damaging	0.56
R2214:Lmtk3	UTSW	7	45,444,277 (GRCm39)	unclassified	probably benign
R2369:Lmtk3	UTSW	7	45,444,512 (GRCm39)	unclassified	probably benign
R4084:Lmtk3	UTSW	7	45,442,716 (GRCm39)	missense	probably damaging	0.97
R4246:Lmtk3	UTSW	7	45,443,486 (GRCm39)	missense	possibly damaging	0.75
R4247:Lmtk3	UTSW	7	45,443,486 (GRCm39)	missense	possibly damaging	0.75
R4249:Lmtk3	UTSW	7	45,443,486 (GRCm39)	missense	possibly damaging	0.75
R4250:Lmtk3	UTSW	7	45,443,486 (GRCm39)	missense	possibly damaging	0.75
R4587:Lmtk3	UTSW	7	45,443,504 (GRCm39)	missense	possibly damaging	0.92
R5026:Lmtk3	UTSW	7	45,443,836 (GRCm39)	unclassified	probably benign
R5275:Lmtk3	UTSW	7	45,440,722 (GRCm39)	missense	probably damaging	1.00
R5295:Lmtk3	UTSW	7	45,440,722 (GRCm39)	missense	probably damaging	1.00
R5624:Lmtk3	UTSW	7	45,436,286 (GRCm39)	missense	probably damaging	0.96
R5688:Lmtk3	UTSW	7	45,440,834 (GRCm39)	missense	probably damaging	1.00
R6478:Lmtk3	UTSW	7	45,448,013 (GRCm39)	missense	unknown
R6737:Lmtk3	UTSW	7	45,443,051 (GRCm39)	missense	probably damaging	0.99
R6800:Lmtk3	UTSW	7	45,443,233 (GRCm39)	missense	possibly damaging	0.91
R6856:Lmtk3	UTSW	7	45,443,721 (GRCm39)	unclassified	probably benign
R7319:Lmtk3	UTSW	7	45,443,740 (GRCm39)	missense	unknown
R7335:Lmtk3	UTSW	7	45,444,581 (GRCm39)	missense	unknown
R7353:Lmtk3	UTSW	7	45,437,424 (GRCm39)	missense	possibly damaging	0.46
R7621:Lmtk3	UTSW	7	45,442,841 (GRCm39)	missense	probably damaging	1.00
R7699:Lmtk3	UTSW	7	45,441,998 (GRCm39)	missense	probably damaging	1.00
R7700:Lmtk3	UTSW	7	45,441,998 (GRCm39)	missense	probably damaging	1.00
R7836:Lmtk3	UTSW	7	45,436,327 (GRCm39)	missense	possibly damaging	0.89
R7929:Lmtk3	UTSW	7	45,444,572 (GRCm39)	missense	unknown
R7951:Lmtk3	UTSW	7	45,435,030 (GRCm39)	missense	probably benign	0.01
R7976:Lmtk3	UTSW	7	45,444,890 (GRCm39)	missense	unknown
R8128:Lmtk3	UTSW	7	45,443,598 (GRCm39)	missense
R8678:Lmtk3	UTSW	7	45,435,975 (GRCm39)	nonsense	probably null
R8732:Lmtk3	UTSW	7	45,447,712 (GRCm39)	missense	unknown
R9335:Lmtk3	UTSW	7	45,442,165 (GRCm39)	missense	probably damaging	1.00
R9356:Lmtk3	UTSW	7	45,443,312 (GRCm39)	missense	probably damaging	0.96
R9432:Lmtk3	UTSW	7	45,441,994 (GRCm39)	missense	probably damaging	1.00
R9645:Lmtk3	UTSW	7	45,450,431 (GRCm39)	missense	unknown
X0052:Lmtk3	UTSW	7	45,442,922 (GRCm39)	missense	probably benign	0.03
X0067:Lmtk3	UTSW	7	45,444,104 (GRCm39)	unclassified	probably benign

Predicted Primers

PCR Primer
(F):5'- AGGACAGCAGCAGCCTTGGA -3'
(R):5'- GCTCGGTGCTCACCTGAACTACAAA -3'

Sequencing Primer
(F):5'- TGTCCCTTGTGCAGCCG -3'
(R):5'- TCACCTGAACTACAAAGGTTGG -3'

Posted On

2014-05-09