Incidental Mutation 'R1675:Gin1'
ID187965
Institutional Source Beutler Lab
Gene Symbol Gin1
Ensembl Gene ENSMUSG00000026333
Gene Namegypsy retrotransposon integrase 1
Synonyms4930429M06, Zh2c2
MMRRC Submission 039711-MU
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #R1675 (G1)
Quality Score225
Status Not validated
Chromosome1
Chromosomal Location97770172-97793709 bp(+) (GRCm38)
Type of Mutationnonsense
DNA Base Change (assembly) T to A at 97786055 bp
ZygosityHeterozygous
Amino Acid Change Leucine to Stop codon at position 360 (L360*)
Ref Sequence ENSEMBL: ENSMUSP00000108464 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000027571] [ENSMUST00000112844] [ENSMUST00000138142]
Predicted Effect probably null
Transcript: ENSMUST00000027571
AA Change: L271*
SMART Domains Protein: ENSMUSP00000027571
Gene: ENSMUSG00000026333
AA Change: L271*

DomainStartEndE-ValueType
low complexity region 63 73 N/A INTRINSIC
SCOP:d1exqa_ 112 208 2e-5 SMART
low complexity region 254 264 N/A INTRINSIC
Predicted Effect probably null
Transcript: ENSMUST00000112844
AA Change: L360*
SMART Domains Protein: ENSMUSP00000108464
Gene: ENSMUSG00000026333
AA Change: L360*

DomainStartEndE-ValueType
low complexity region 63 73 N/A INTRINSIC
PDB:4IKF|B 84 289 3e-8 PDB
SCOP:d1exqa_ 145 297 4e-16 SMART
low complexity region 343 353 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000138142
Predicted Effect probably benign
Transcript: ENSMUST00000189031
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 96.5%
  • 20x: 93.1%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 60 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca12 C T 1: 71,263,411 probably null Het
Adam6b T C 12: 113,491,044 Y494H probably benign Het
Adamtsl2 GC G 2: 27,082,485 probably null Het
Anapc2 G A 2: 25,272,639 V42M possibly damaging Het
Aph1a T A 3: 95,894,899 D64E possibly damaging Het
Arhgef11 C T 3: 87,731,211 A1111V possibly damaging Het
Atoh1 T C 6: 64,730,157 S279P probably benign Het
Atp10b A G 11: 43,225,648 T941A probably damaging Het
Barhl1 C T 2: 28,915,411 R90Q possibly damaging Het
Calr3 T C 8: 72,431,458 D91G probably damaging Het
Ccdc148 T C 2: 58,980,554 D317G probably damaging Het
Cnn3 C T 3: 121,457,169 Q19* probably null Het
Cul5 T C 9: 53,646,683 D207G probably benign Het
Cyp4x1 T C 4: 115,127,560 E41G possibly damaging Het
Dagla T A 19: 10,269,323 M138L probably benign Het
Dnah6 A T 6: 73,129,540 M1738K probably damaging Het
Eif4enif1 T A 11: 3,215,686 S88T probably benign Het
Eno3 T C 11: 70,658,666 probably null Het
Erbb3 C A 10: 128,571,204 S1029I probably damaging Het
Erbin C A 13: 103,841,178 V624L probably damaging Het
Fam170b C T 14: 32,835,402 Q65* probably null Het
Fam208b T C 13: 3,569,507 I2241M possibly damaging Het
Gldc A T 19: 30,143,453 D359E probably damaging Het
Gpr107 A T 2: 31,167,051 T52S possibly damaging Het
Hip1r A G 5: 123,994,820 Y227C probably damaging Het
Hmgxb3 A G 18: 61,135,559 L1004P probably damaging Het
Hspa1l A G 17: 34,977,443 N153D probably damaging Het
Itga8 C A 2: 12,200,163 V488L probably damaging Het
Kcnk10 G A 12: 98,496,288 A134V probably benign Het
Kif18a T A 2: 109,298,403 C406S probably benign Het
Klhl28 A T 12: 64,951,819 S300R probably damaging Het
Kmt2e C T 5: 23,482,453 Q434* probably null Het
Lilrb4a A G 10: 51,496,185 T222A probably benign Het
Lipn G A 19: 34,080,710 R277Q probably damaging Het
Lrrc61 G A 6: 48,568,774 R177Q possibly damaging Het
Lrrc74a G A 12: 86,741,026 E144K probably damaging Het
Mal T C 2: 127,635,044 Y77C probably benign Het
Map1a T A 2: 121,302,655 C1079* probably null Het
Mbd5 T A 2: 49,256,218 S147T possibly damaging Het
Nsd2 T A 5: 33,861,149 M509K probably benign Het
Olfr1342 C T 4: 118,689,948 R168H probably benign Het
Olfr262 C T 19: 12,240,831 V277I probably benign Het
Olfr414 T C 1: 174,431,097 V223A probably benign Het
Olfr51 T C 11: 51,007,637 F222L probably benign Het
Rcor2 C T 19: 7,270,181 L45F probably damaging Het
Rpl12 T A 2: 32,963,525 D107E probably benign Het
Rpl7l1 A T 17: 46,778,191 F205I probably damaging Het
Samd4b C T 7: 28,414,010 G177R probably damaging Het
Sema4a A T 3: 88,454,766 F18I possibly damaging Het
Slc37a1 A T 17: 31,338,074 T405S probably damaging Het
Snrnp40 C G 4: 130,378,043 probably null Het
Syt14 T C 1: 192,897,482 D781G probably damaging Het
Tprn T G 2: 25,264,409 D574E probably benign Het
Trim75 T A 8: 64,982,511 E429V probably damaging Het
Trit1 C T 4: 123,054,236 R450C possibly damaging Het
Ttn A T 2: 76,811,243 L5176Q possibly damaging Het
Unc13c A G 9: 73,639,050 probably null Het
Usp49 C A 17: 47,673,410 L447I probably damaging Het
Vmn1r20 T C 6: 57,431,952 C88R probably benign Het
Zfp94 T A 7: 24,302,834 K394N probably damaging Het
Other mutations in Gin1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01479:Gin1 APN 1 97792372 missense possibly damaging 0.95
IGL01508:Gin1 APN 1 97777437 missense probably benign
IGL01874:Gin1 APN 1 97783072 missense probably damaging 1.00
R0136:Gin1 UTSW 1 97783016 missense possibly damaging 0.86
R0299:Gin1 UTSW 1 97783016 missense possibly damaging 0.86
R1302:Gin1 UTSW 1 97775589 nonsense probably null
R1607:Gin1 UTSW 1 97786150 missense probably damaging 1.00
R1739:Gin1 UTSW 1 97786104 missense probably damaging 0.99
R1769:Gin1 UTSW 1 97792437 missense probably benign 0.02
R1817:Gin1 UTSW 1 97785226 splice site probably null
R1818:Gin1 UTSW 1 97785226 splice site probably null
R1819:Gin1 UTSW 1 97785226 splice site probably null
R1907:Gin1 UTSW 1 97775447 unclassified probably benign
R2325:Gin1 UTSW 1 97792561 missense probably damaging 1.00
R4206:Gin1 UTSW 1 97792420 missense possibly damaging 0.90
R4571:Gin1 UTSW 1 97785076 missense probably damaging 1.00
R4576:Gin1 UTSW 1 97792339 missense probably damaging 1.00
R4670:Gin1 UTSW 1 97784840 missense probably damaging 1.00
R4671:Gin1 UTSW 1 97784840 missense probably damaging 1.00
R5659:Gin1 UTSW 1 97775532 missense possibly damaging 0.95
R6360:Gin1 UTSW 1 97792539 missense possibly damaging 0.90
R7035:Gin1 UTSW 1 97792375 missense possibly damaging 0.92
R7229:Gin1 UTSW 1 97785151 missense probably benign 0.02
Predicted Primers PCR Primer
(F):5'- TGAGGAGTCCATGCTTCAGCTCAG -3'
(R):5'- AGGTAGCAGATACTTACCCTGCTCAC -3'

Sequencing Primer
(F):5'- ATGCTTCAGCTCAGGAGCAG -3'
(R):5'- TCTCTCACATAGGGCCTAAGGTG -3'
Posted On2014-05-09