Mutagenetix > Incidental Mutation

Incidental Mutation 'R1681:Chd9'

188513

Institutional Source

Beutler Lab

Gene Symbol

Chd9

Ensembl Gene

ENSMUSG00000056608

Gene Name

chromodomain helicase DNA binding protein 9

Synonyms

1810014J18Rik, AD013, 9030205D12Rik, A330063D19Rik

MMRRC Submission

039717-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1681 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

90828352-91054516 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 90973135 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Phenylalanine at position 598 (I598F)

Ref Sequence

ENSEMBL: ENSMUSP00000147407 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000048665] [ENSMUST00000109614] [ENSMUST00000209203] [ENSMUST00000209423] [ENSMUST00000209746] [ENSMUST00000210947] [ENSMUST00000211403]

AlphaFold

no structure available at present

Predicted Effect

unknown
Transcript: ENSMUST00000048665
AA Change: I598F

SMART Domains

Protein: ENSMUSP00000046356
Gene: ENSMUSG00000056608
AA Change: I598F

Domain	Start	End	E-Value	Type
low complexity region	323	334	N/A	INTRINSIC
low complexity region	586	605	N/A	INTRINSIC
CHROMO	687	753	2.41e-10	SMART
CHROMO	770	828	4.35e-8	SMART
DEXDc	855	1056	3.8e-36	SMART
Blast:DEXDc	1149	1174	7e-6	BLAST
HELICc	1211	1295	2.86e-22	SMART
low complexity region	1462	1475	N/A	INTRINSIC
Blast:DEXDc	1506	1551	3e-16	BLAST
low complexity region	2048	2067	N/A	INTRINSIC
low complexity region	2127	2199	N/A	INTRINSIC
BRK	2456	2505	6.77e-25	SMART
BRK	2530	2574	1.5e-17	SMART
low complexity region	2594	2608	N/A	INTRINSIC
low complexity region	2609	2639	N/A	INTRINSIC
low complexity region	2642	2659	N/A	INTRINSIC
low complexity region	2690	2704	N/A	INTRINSIC
low complexity region	2746	2771	N/A	INTRINSIC
low complexity region	2802	2813	N/A	INTRINSIC
low complexity region	2843	2869	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000109614
AA Change: I598F

SMART Domains

Protein: ENSMUSP00000105243
Gene: ENSMUSG00000056608
AA Change: I598F

Domain	Start	End	E-Value	Type
low complexity region	323	334	N/A	INTRINSIC
low complexity region	586	605	N/A	INTRINSIC
CHROMO	687	753	2.41e-10	SMART
CHROMO	770	828	4.35e-8	SMART
DEXDc	855	1056	3.8e-36	SMART
Blast:DEXDc	1149	1174	7e-6	BLAST
HELICc	1211	1295	2.86e-22	SMART
low complexity region	1462	1475	N/A	INTRINSIC
Blast:DEXDc	1506	1551	3e-16	BLAST
low complexity region	2048	2067	N/A	INTRINSIC
low complexity region	2127	2199	N/A	INTRINSIC
BRK	2472	2521	6.77e-25	SMART
BRK	2546	2590	1.5e-17	SMART
low complexity region	2610	2624	N/A	INTRINSIC
low complexity region	2625	2655	N/A	INTRINSIC
low complexity region	2658	2675	N/A	INTRINSIC
low complexity region	2706	2720	N/A	INTRINSIC
low complexity region	2762	2787	N/A	INTRINSIC
low complexity region	2818	2829	N/A	INTRINSIC
low complexity region	2859	2885	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000209203
AA Change: I598F

PolyPhen 2 Score 0.979 (Sensitivity: 0.75; Specificity: 0.96)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000209341

Predicted Effect

unknown
Transcript: ENSMUST00000209423
AA Change: I598F

Predicted Effect

possibly damaging
Transcript: ENSMUST00000209746
AA Change: I17F

PolyPhen 2 Score 0.663 (Sensitivity: 0.86; Specificity: 0.91)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000210887

Predicted Effect

probably benign
Transcript: ENSMUST00000210947
AA Change: I125F

PolyPhen 2 Score 0.423 (Sensitivity: 0.89; Specificity: 0.90)

Predicted Effect

probably damaging
Transcript: ENSMUST00000211403
AA Change: I598F

PolyPhen 2 Score 0.963 (Sensitivity: 0.78; Specificity: 0.95)

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.6%
20x: 93.6%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 87 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acaca	T	A	11: 84,226,185 (GRCm38)	I247N	probably damaging	Het
Ankle1	G	T	8: 71,407,618 (GRCm38)	S260I	probably benign	Het
Aoc2	T	C	11: 101,325,192 (GRCm38)	S34P	probably benign	Het
Ap1m1	A	C	8: 72,256,122 (GRCm38)	I397L	possibly damaging	Het
Apba1	C	A	19: 23,936,561 (GRCm38)	D649E	probably damaging	Het
Aptx	C	T	4: 40,697,274 (GRCm38)	V25M	probably benign	Het
Arhgef18	G	A	8: 3,439,645 (GRCm38)	G326R	probably damaging	Het
Atm	A	C	9: 53,522,155 (GRCm38)	I265S	possibly damaging	Het
B3galt4	A	T	17: 33,951,213 (GRCm38)	V17E	probably benign	Het
Bcl7a	T	A	5: 123,356,023 (GRCm38)	M86K	possibly damaging	Het
Cela3a	T	A	4: 137,402,684 (GRCm38)		probably null	Het
Cep85	T	A	4: 134,148,728 (GRCm38)	K456*	probably null	Het
Ces1f	C	A	8: 93,275,414 (GRCm38)	A29S	probably benign	Het
Cntln	T	C	4: 84,947,635 (GRCm38)	L176S	probably damaging	Het
Cntn3	A	T	6: 102,170,668 (GRCm38)	N909K	probably damaging	Het
Cntnap5b	T	C	1: 100,076,107 (GRCm38)	S271P	probably damaging	Het
Col6a3	T	A	1: 90,773,502 (GRCm38)	H2564L	unknown	Het
Cyp2b19	C	A	7: 26,763,340 (GRCm38)		probably null	Het
Dapk1	G	T	13: 60,718,464 (GRCm38)		probably null	Het
Dnah7b	T	A	1: 46,324,712 (GRCm38)	Y3497*	probably null	Het
Duoxa2	T	C	2: 122,299,162 (GRCm38)		probably null	Het
Eny2	T	C	15: 44,432,478 (GRCm38)	W42R	probably damaging	Het
Epha3	A	G	16: 63,595,728 (GRCm38)	V635A	probably damaging	Het
Fam167b	G	C	4: 129,578,276 (GRCm38)	Q34E	probably benign	Het
Fam26f	A	G	10: 34,127,900 (GRCm38)	F4L	probably benign	Het
Fancm	T	C	12: 65,105,656 (GRCm38)	M962T	probably benign	Het
Gimap8	T	A	6: 48,656,411 (GRCm38)	I388N	probably benign	Het
Gpaa1	A	G	15: 76,331,453 (GRCm38)	T22A	probably benign	Het
Hoxc11	T	C	15: 102,955,156 (GRCm38)	S211P	possibly damaging	Het
Hsd17b12	T	C	2: 94,033,561 (GRCm38)	N312S	unknown	Het
Idh2	T	G	7: 80,099,158 (GRCm38)	E125A	probably damaging	Het
Igdcc4	A	G	9: 65,128,795 (GRCm38)	Y712C	probably damaging	Het
Kank1	T	C	19: 25,410,304 (GRCm38)	V447A	possibly damaging	Het
Kif1b	T	A	4: 149,195,501 (GRCm38)		probably null	Het
Klc4	A	T	17: 46,636,770 (GRCm38)	D335E	probably damaging	Het
Klhl33	T	A	14: 50,893,077 (GRCm38)	D320V	probably benign	Het
Krt73	A	T	15: 101,802,047 (GRCm38)	M84K	possibly damaging	Het
Kti12	T	A	4: 108,848,858 (GRCm38)	I323N	probably damaging	Het
Kynu	T	C	2: 43,679,825 (GRCm38)	L373P	probably damaging	Het
Lats1	T	C	10: 7,705,914 (GRCm38)	M821T	probably damaging	Het
Lnx1	A	T	5: 74,685,410 (GRCm38)	H126Q	probably benign	Het
Lonrf2	G	A	1: 38,813,276 (GRCm38)	P165S	probably benign	Het
Lrrc4b	T	A	7: 44,461,177 (GRCm38)	Y158N	probably damaging	Het
Lrrc74b	C	A	16: 17,559,753 (GRCm38)	R87L	probably damaging	Het
Meig1	T	C	2: 3,409,274 (GRCm38)	D63G	probably damaging	Het
Mrpl38	G	A	11: 116,138,429 (GRCm38)		probably benign	Het
Naip2	C	T	13: 100,161,860 (GRCm38)	G556D	probably benign	Het
Naip2	T	C	13: 100,161,854 (GRCm38)	E558G	probably benign	Het
Nlrp1a	T	A	11: 71,142,358 (GRCm38)	E3D	unknown	Het
Nphs2	T	A	1: 156,320,898 (GRCm38)	D110E	probably damaging	Het
Nxn	T	A	11: 76,272,464 (GRCm38)	K244N	probably benign	Het
Oas3	A	T	5: 120,769,908 (GRCm38)	F322L	probably benign	Het
Obscn	T	A	11: 59,103,325 (GRCm38)	Y1577F	probably damaging	Het
Olfr1122	G	A	2: 87,388,620 (GRCm38)	R305K	possibly damaging	Het
Olfr911-ps1	T	A	9: 38,524,117 (GRCm38)	N128K	probably benign	Het
Olfr914	G	A	9: 38,606,948 (GRCm38)	G161D	probably damaging	Het
Olfr917	A	G	9: 38,665,320 (GRCm38)	Y175H	probably benign	Het
Olfr924	T	C	9: 38,848,513 (GRCm38)	M133T	probably damaging	Het
Panx1	T	C	9: 15,007,783 (GRCm38)	D260G	probably benign	Het
Pcdhb15	T	C	18: 37,473,813 (GRCm38)	Y33H	probably damaging	Het
Pik3ap1	C	A	19: 41,308,529 (GRCm38)	V461F	probably damaging	Het
Plpp3	G	A	4: 105,208,805 (GRCm38)		probably null	Het
Prtn3	A	T	10: 79,880,541 (GRCm38)	T61S	probably benign	Het
Psen1	T	A	12: 83,724,620 (GRCm38)	Y225N	probably damaging	Het
Rab44	T	A	17: 29,140,124 (GRCm38)	S429T	possibly damaging	Het
Ralgapa1	T	C	12: 55,762,603 (GRCm38)	I462M	probably benign	Het
Rbfox3	T	C	11: 118,505,669 (GRCm38)	N105S	probably damaging	Het
Rbm7	A	C	9: 48,489,721 (GRCm38)	Y236D	possibly damaging	Het
Samhd1	T	C	2: 157,101,732 (GRCm38)	T621A	probably benign	Het
Samt3	C	A	X: 86,046,650 (GRCm38)	D49E	probably benign	Het
Sass6	T	C	3: 116,603,473 (GRCm38)	V26A	possibly damaging	Het
Scn11a	C	T	9: 119,804,412 (GRCm38)	M418I	possibly damaging	Het
Scrib	T	C	15: 76,064,567 (GRCm38)	E480G	probably damaging	Het
Sec24a	T	G	11: 51,695,189 (GRCm38)	T1071P	probably damaging	Het
Siglecg	A	C	7: 43,408,941 (GRCm38)	E84A	probably benign	Het
Slc6a17	C	T	3: 107,474,386 (GRCm38)	V419I	probably damaging	Het
Soga1	T	C	2: 157,030,530 (GRCm38)	T966A	possibly damaging	Het
Ssr2	T	C	3: 88,581,042 (GRCm38)	M75T	possibly damaging	Het
Tbc1d22b	A	G	17: 29,575,177 (GRCm38)	T275A	possibly damaging	Het
Tbx15	T	A	3: 99,351,824 (GRCm38)		probably null	Het
Tll1	A	C	8: 64,085,551 (GRCm38)	L353R	possibly damaging	Het
Tlr4	C	T	4: 66,841,105 (GRCm38)	P712S	probably damaging	Het
Tmem145	T	A	7: 25,314,734 (GRCm38)	F424L	possibly damaging	Het
Tnrc18	T	C	5: 142,773,817 (GRCm38)	K755E	unknown	Het
Trmt44	A	G	5: 35,569,977 (GRCm38)	I298T	probably benign	Het
Vmn1r69	A	G	7: 10,580,252 (GRCm38)	V184A	probably benign	Het
Zfp84	T	C	7: 29,777,400 (GRCm38)	C506R	probably damaging	Het

Other mutations in Chd9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00420:Chd9	APN	8	91,025,392 (GRCm38)	missense	possibly damaging	0.79
IGL00547:Chd9	APN	8	91,005,798 (GRCm38)	missense	probably damaging	1.00
IGL00589:Chd9	APN	8	91,015,846 (GRCm38)	missense	probably damaging	1.00
IGL00640:Chd9	APN	8	90,986,132 (GRCm38)	missense	probably damaging	0.99
IGL00663:Chd9	APN	8	90,983,490 (GRCm38)	missense	probably damaging	1.00
IGL00852:Chd9	APN	8	90,973,207 (GRCm38)	missense	probably benign	0.29
IGL00908:Chd9	APN	8	90,996,880 (GRCm38)	missense	probably damaging	1.00
IGL00911:Chd9	APN	8	91,051,692 (GRCm38)	missense	probably damaging	1.00
IGL01068:Chd9	APN	8	91,042,116 (GRCm38)	missense	probably benign	0.13
IGL01668:Chd9	APN	8	91,026,776 (GRCm38)	missense	possibly damaging	0.53
IGL01873:Chd9	APN	8	90,933,767 (GRCm38)	missense	probably benign	0.00
IGL01969:Chd9	APN	8	91,033,510 (GRCm38)	missense	possibly damaging	0.72
IGL02105:Chd9	APN	8	90,932,488 (GRCm38)	missense	probably damaging	1.00
IGL02153:Chd9	APN	8	90,956,494 (GRCm38)	nonsense	probably null
IGL02164:Chd9	APN	8	90,933,221 (GRCm38)	missense	possibly damaging	0.94
IGL02725:Chd9	APN	8	91,051,684 (GRCm38)	missense	possibly damaging	0.78
IGL02755:Chd9	APN	8	91,033,582 (GRCm38)	missense	probably benign	0.33
IGL02892:Chd9	APN	8	90,976,915 (GRCm38)	splice site	probably benign
IGL02897:Chd9	APN	8	90,933,868 (GRCm38)	splice site	probably benign
IGL03005:Chd9	APN	8	91,011,447 (GRCm38)	missense	probably damaging	0.98
IGL03062:Chd9	APN	8	91,015,267 (GRCm38)	splice site	probably benign
IGL03140:Chd9	APN	8	91,042,228 (GRCm38)	missense	possibly damaging	0.91
hovel	UTSW	8	91,015,204 (GRCm38)	missense	probably benign	0.19
shack	UTSW	8	90,932,798 (GRCm38)	missense	probably damaging	1.00
R0056:Chd9	UTSW	8	90,933,537 (GRCm38)	missense	possibly damaging	0.62
R0157:Chd9	UTSW	8	91,008,836 (GRCm38)	splice site	probably null
R0238:Chd9	UTSW	8	90,932,828 (GRCm38)	missense	probably damaging	1.00
R0238:Chd9	UTSW	8	90,932,828 (GRCm38)	missense	probably damaging	1.00
R0432:Chd9	UTSW	8	90,994,450 (GRCm38)	splice site	probably benign
R0454:Chd9	UTSW	8	90,973,231 (GRCm38)	missense	possibly damaging	0.83
R0573:Chd9	UTSW	8	90,998,595 (GRCm38)	missense	probably damaging	1.00
R0580:Chd9	UTSW	8	90,994,563 (GRCm38)	missense	possibly damaging	0.91
R0604:Chd9	UTSW	8	91,036,542 (GRCm38)	missense	possibly damaging	0.82
R0662:Chd9	UTSW	8	90,977,676 (GRCm38)	missense	probably damaging	0.99
R0825:Chd9	UTSW	8	91,051,197 (GRCm38)	missense	probably benign	0.06
R0945:Chd9	UTSW	8	90,933,002 (GRCm38)	missense	possibly damaging	0.60
R0964:Chd9	UTSW	8	91,015,204 (GRCm38)	missense	probably benign	0.19
R0967:Chd9	UTSW	8	90,989,479 (GRCm38)	missense	probably damaging	1.00
R1015:Chd9	UTSW	8	90,932,578 (GRCm38)	missense	probably damaging	0.99
R1066:Chd9	UTSW	8	90,986,136 (GRCm38)	nonsense	probably null
R1244:Chd9	UTSW	8	91,022,929 (GRCm38)	missense	probably damaging	0.99
R1505:Chd9	UTSW	8	91,006,495 (GRCm38)	splice site	probably null
R1570:Chd9	UTSW	8	91,036,542 (GRCm38)	missense	probably benign	0.03
R1591:Chd9	UTSW	8	90,983,538 (GRCm38)	missense	probably damaging	0.97
R1624:Chd9	UTSW	8	90,998,535 (GRCm38)	missense	probably benign	0.17
R1626:Chd9	UTSW	8	90,994,596 (GRCm38)	missense	probably benign	0.00
R1632:Chd9	UTSW	8	90,956,707 (GRCm38)	nonsense	probably null
R1649:Chd9	UTSW	8	90,932,601 (GRCm38)	missense	possibly damaging	0.88
R1664:Chd9	UTSW	8	91,022,790 (GRCm38)	splice site	probably null
R1668:Chd9	UTSW	8	91,041,186 (GRCm38)	missense	probably damaging	0.99
R1695:Chd9	UTSW	8	91,001,782 (GRCm38)	missense	probably damaging	1.00
R1714:Chd9	UTSW	8	91,034,225 (GRCm38)	utr 3 prime	probably benign
R1746:Chd9	UTSW	8	91,010,698 (GRCm38)	missense	probably benign	0.01
R1843:Chd9	UTSW	8	91,010,794 (GRCm38)	missense	probably benign	0.19
R1844:Chd9	UTSW	8	90,956,695 (GRCm38)	nonsense	probably null
R1941:Chd9	UTSW	8	90,977,069 (GRCm38)	critical splice donor site	probably null
R2022:Chd9	UTSW	8	91,035,054 (GRCm38)	missense	probably benign	0.17
R2027:Chd9	UTSW	8	90,907,991 (GRCm38)	unclassified	probably benign
R2098:Chd9	UTSW	8	91,033,987 (GRCm38)	missense	probably benign	0.01
R2099:Chd9	UTSW	8	91,033,987 (GRCm38)	missense	probably benign	0.01
R2100:Chd9	UTSW	8	91,033,987 (GRCm38)	missense	probably benign	0.01
R2101:Chd9	UTSW	8	91,033,987 (GRCm38)	missense	probably benign	0.01
R2224:Chd9	UTSW	8	91,011,285 (GRCm38)	missense	probably benign	0.04
R2276:Chd9	UTSW	8	91,033,987 (GRCm38)	missense	probably benign	0.01
R2278:Chd9	UTSW	8	91,033,987 (GRCm38)	missense	probably benign	0.01
R2316:Chd9	UTSW	8	91,051,128 (GRCm38)	missense	probably damaging	0.99
R2507:Chd9	UTSW	8	91,033,987 (GRCm38)	missense	probably benign	0.01
R2508:Chd9	UTSW	8	91,033,987 (GRCm38)	missense	probably benign	0.01
R2988:Chd9	UTSW	8	91,030,460 (GRCm38)	splice site	probably null
R3418:Chd9	UTSW	8	91,036,591 (GRCm38)	missense	probably damaging	1.00
R3817:Chd9	UTSW	8	90,984,265 (GRCm38)	splice site	probably benign
R3923:Chd9	UTSW	8	90,933,519 (GRCm38)	missense	probably benign	0.16
R4001:Chd9	UTSW	8	90,956,557 (GRCm38)	missense	probably damaging	1.00
R4003:Chd9	UTSW	8	90,956,557 (GRCm38)	missense	probably damaging	1.00
R4006:Chd9	UTSW	8	90,933,560 (GRCm38)	missense	probably benign	0.12
R4013:Chd9	UTSW	8	90,973,169 (GRCm38)	missense	possibly damaging	0.82
R4067:Chd9	UTSW	8	91,023,574 (GRCm38)	missense	possibly damaging	0.53
R4108:Chd9	UTSW	8	91,010,676 (GRCm38)	missense	probably benign	0.04
R4125:Chd9	UTSW	8	91,051,284 (GRCm38)	missense	probably damaging	0.99
R4126:Chd9	UTSW	8	91,051,284 (GRCm38)	missense	probably damaging	0.99
R4452:Chd9	UTSW	8	90,977,680 (GRCm38)	missense	probably damaging	0.99
R4463:Chd9	UTSW	8	90,978,999 (GRCm38)	missense	probably benign	0.01
R4478:Chd9	UTSW	8	91,034,031 (GRCm38)	utr 3 prime	probably benign
R4587:Chd9	UTSW	8	91,036,506 (GRCm38)	missense	possibly damaging	0.95
R4628:Chd9	UTSW	8	90,983,463 (GRCm38)	missense	probably benign	0.05
R4667:Chd9	UTSW	8	91,033,800 (GRCm38)	missense	possibly damaging	0.73
R4908:Chd9	UTSW	8	91,015,249 (GRCm38)	missense	possibly damaging	0.50
R4912:Chd9	UTSW	8	91,034,230 (GRCm38)	missense	possibly damaging	0.84
R4977:Chd9	UTSW	8	91,033,708 (GRCm38)	missense	possibly damaging	0.96
R5016:Chd9	UTSW	8	91,006,626 (GRCm38)	nonsense	probably null
R5083:Chd9	UTSW	8	90,984,374 (GRCm38)	missense	probably damaging	1.00
R5088:Chd9	UTSW	8	90,977,519 (GRCm38)	missense	possibly damaging	0.94
R5090:Chd9	UTSW	8	91,026,834 (GRCm38)	nonsense	probably null
R5307:Chd9	UTSW	8	90,997,149 (GRCm38)	missense	probably damaging	1.00
R5541:Chd9	UTSW	8	91,051,504 (GRCm38)	missense	probably benign	0.09
R5559:Chd9	UTSW	8	91,015,925 (GRCm38)	critical splice donor site	probably null
R5638:Chd9	UTSW	8	91,011,450 (GRCm38)	missense	possibly damaging	0.67
R5640:Chd9	UTSW	8	91,036,562 (GRCm38)	missense	probably damaging	1.00
R5793:Chd9	UTSW	8	91,001,756 (GRCm38)	missense	probably damaging	1.00
R5827:Chd9	UTSW	8	90,989,450 (GRCm38)	missense	probably damaging	1.00
R5834:Chd9	UTSW	8	90,997,164 (GRCm38)	missense	probably damaging	1.00
R5875:Chd9	UTSW	8	91,051,836 (GRCm38)	missense	probably damaging	0.99
R6002:Chd9	UTSW	8	90,978,887 (GRCm38)	missense	probably damaging	1.00
R6091:Chd9	UTSW	8	91,035,063 (GRCm38)	missense	probably damaging	1.00
R6185:Chd9	UTSW	8	91,049,137 (GRCm38)	missense	probably damaging	1.00
R6246:Chd9	UTSW	8	90,932,417 (GRCm38)	missense	probably damaging	1.00
R6292:Chd9	UTSW	8	90,932,922 (GRCm38)	missense	probably benign	0.05
R6305:Chd9	UTSW	8	91,030,546 (GRCm38)	missense	possibly damaging	0.93
R6348:Chd9	UTSW	8	91,011,275 (GRCm38)	missense	possibly damaging	0.95
R6438:Chd9	UTSW	8	90,998,521 (GRCm38)	missense	probably benign	0.02
R6470:Chd9	UTSW	8	90,932,798 (GRCm38)	missense	probably damaging	1.00
R6798:Chd9	UTSW	8	91,051,554 (GRCm38)	missense	possibly damaging	0.56
R6902:Chd9	UTSW	8	91,042,951 (GRCm38)	missense	probably damaging	1.00
R6908:Chd9	UTSW	8	90,956,416 (GRCm38)	missense	probably benign	0.02
R6929:Chd9	UTSW	8	91,042,945 (GRCm38)	missense	probably damaging	1.00
R6969:Chd9	UTSW	8	90,978,914 (GRCm38)	missense	probably benign	0.34
R7043:Chd9	UTSW	8	91,034,215 (GRCm38)	utr 3 prime	probably benign
R7094:Chd9	UTSW	8	90,989,561 (GRCm38)	missense	unknown
R7126:Chd9	UTSW	8	91,015,225 (GRCm38)	missense	unknown
R7182:Chd9	UTSW	8	91,006,622 (GRCm38)	missense	unknown
R7219:Chd9	UTSW	8	91,001,766 (GRCm38)	missense	unknown
R7260:Chd9	UTSW	8	90,994,543 (GRCm38)	missense	unknown
R7293:Chd9	UTSW	8	91,034,079 (GRCm38)	missense	unknown
R7303:Chd9	UTSW	8	91,051,904 (GRCm38)	missense	unknown
R7358:Chd9	UTSW	8	91,034,218 (GRCm38)	missense	unknown
R7358:Chd9	UTSW	8	90,983,487 (GRCm38)	missense	unknown
R7451:Chd9	UTSW	8	91,033,818 (GRCm38)	missense	probably benign	0.27
R7451:Chd9	UTSW	8	91,033,790 (GRCm38)	frame shift	probably null
R7456:Chd9	UTSW	8	90,932,525 (GRCm38)	nonsense	probably null
R7481:Chd9	UTSW	8	90,956,438 (GRCm38)	missense	unknown
R7532:Chd9	UTSW	8	90,994,565 (GRCm38)	missense	unknown
R7570:Chd9	UTSW	8	90,994,580 (GRCm38)	missense	unknown
R7611:Chd9	UTSW	8	91,036,389 (GRCm38)	missense	probably damaging	1.00
R7673:Chd9	UTSW	8	91,051,697 (GRCm38)	missense	probably damaging	0.96
R7723:Chd9	UTSW	8	91,015,209 (GRCm38)	missense	unknown
R7739:Chd9	UTSW	8	91,035,025 (GRCm38)	missense	probably damaging	1.00
R7759:Chd9	UTSW	8	90,977,550 (GRCm38)	critical splice donor site	probably null
R7916:Chd9	UTSW	8	91,035,056 (GRCm38)	nonsense	probably null
R7921:Chd9	UTSW	8	91,042,281 (GRCm38)	critical splice donor site	probably null
R7957:Chd9	UTSW	8	91,051,698 (GRCm38)	missense	probably damaging	0.99
R7972:Chd9	UTSW	8	91,005,767 (GRCm38)	missense	unknown
R8108:Chd9	UTSW	8	90,933,224 (GRCm38)	missense	unknown
R8115:Chd9	UTSW	8	91,036,332 (GRCm38)	missense	probably damaging	0.99
R8165:Chd9	UTSW	8	91,041,141 (GRCm38)	missense	probably damaging	1.00
R8171:Chd9	UTSW	8	91,025,387 (GRCm38)	missense	possibly damaging	0.92
R8186:Chd9	UTSW	8	90,998,605 (GRCm38)	missense	unknown
R8208:Chd9	UTSW	8	91,037,263 (GRCm38)	splice site	probably null
R8256:Chd9	UTSW	8	90,933,501 (GRCm38)	missense	unknown
R8281:Chd9	UTSW	8	91,036,597 (GRCm38)	missense	probably damaging	1.00
R8504:Chd9	UTSW	8	90,996,844 (GRCm38)	missense	unknown
R8836:Chd9	UTSW	8	91,041,184 (GRCm38)	missense	probably damaging	0.99
R8892:Chd9	UTSW	8	90,933,840 (GRCm38)	missense	unknown
R8985:Chd9	UTSW	8	90,994,473 (GRCm38)	missense	unknown
R9029:Chd9	UTSW	8	90,956,570 (GRCm38)	missense	unknown
R9030:Chd9	UTSW	8	90,956,570 (GRCm38)	missense	unknown
R9038:Chd9	UTSW	8	90,989,605 (GRCm38)	missense	unknown
R9081:Chd9	UTSW	8	90,977,516 (GRCm38)	nonsense	probably null
R9134:Chd9	UTSW	8	90,933,126 (GRCm38)	missense	unknown
R9205:Chd9	UTSW	8	91,030,642 (GRCm38)	missense	probably benign	0.01
R9309:Chd9	UTSW	8	91,006,691 (GRCm38)	missense	unknown
R9375:Chd9	UTSW	8	90,998,707 (GRCm38)	critical splice donor site	probably null
R9449:Chd9	UTSW	8	90,932,546 (GRCm38)	missense	unknown
R9547:Chd9	UTSW	8	90,956,558 (GRCm38)	missense	unknown
R9573:Chd9	UTSW	8	90,977,674 (GRCm38)	missense	unknown
R9576:Chd9	UTSW	8	90,932,666 (GRCm38)	missense	unknown
R9601:Chd9	UTSW	8	91,005,732 (GRCm38)	nonsense	probably null
R9613:Chd9	UTSW	8	90,956,522 (GRCm38)	nonsense	probably null
R9639:Chd9	UTSW	8	91,034,212 (GRCm38)	missense	probably null
R9718:Chd9	UTSW	8	90,986,173 (GRCm38)	missense	unknown
R9746:Chd9	UTSW	8	91,011,435 (GRCm38)	missense	unknown
R9762:Chd9	UTSW	8	90,986,113 (GRCm38)	missense	unknown
R9764:Chd9	UTSW	8	90,994,592 (GRCm38)	missense	unknown
R9790:Chd9	UTSW	8	91,033,789 (GRCm38)	missense	possibly damaging	0.82
R9791:Chd9	UTSW	8	91,033,789 (GRCm38)	missense	possibly damaging	0.82
RF007:Chd9	UTSW	8	91,033,950 (GRCm38)	missense	possibly damaging	0.66
X0065:Chd9	UTSW	8	91,036,572 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GAAGCAAGCAATAGGACTCGACTCC -3'
(R):5'- TCCATGAGGCAACATTATGCTCCC -3'

Sequencing Primer
(F):5'- GGCTGCAACCAATCTATTAGAAG -3'
(R):5'- TGCTCCCTAAATAATTTCTAACAGTG -3'

Posted On

2014-05-09