Incidental Mutation 'R1404:Nlrp6'
| ID |
188658 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Nlrp6
|
| Ensembl Gene |
ENSMUSG00000038745 |
| Gene Name |
NLR family, pyrin domain containing 6 |
| Synonyms |
Nalp6 |
| MMRRC Submission |
039466-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.062)
|
| Stock # |
R1404 (G1)
|
| Quality Score |
144 |
|
Status
|
Not validated
|
| Chromosome |
7 |
| Chromosomal Location |
140500815-140509105 bp(+) (GRCm39) |
| Type of Mutation |
small deletion (1 aa in frame mutation) |
| DNA Base Change (assembly) |
GAGAAGAAGAAGAAGAAGAAGA to GAGAAGAAGAAGAAGAAGA
at 140504026 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000139170
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000106045]
[ENSMUST00000183845]
[ENSMUST00000184560]
|
| AlphaFold |
Q91WS2 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000106045
|
| SMART Domains |
Protein: ENSMUSP00000101660
Gene: ENSMUSG00000038745
| Domain | Start | End | E-Value | Type |
|---|
|
PYRIN
|
15 |
96 |
5.44e-27 |
SMART |
|
low complexity region
|
158 |
169 |
N/A |
INTRINSIC |
|
Pfam:NACHT
|
194 |
363 |
8.6e-44 |
PFAM |
|
coiled coil region
|
590 |
617 |
N/A |
INTRINSIC |
|
low complexity region
|
675 |
697 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
715 |
763 |
9.43e-6 |
PROSPERO |
|
internal_repeat_1
|
828 |
876 |
9.43e-6 |
PROSPERO |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000183761
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000183845
|
| SMART Domains |
Protein: ENSMUSP00000139357
Gene: ENSMUSG00000038745
| Domain | Start | End | E-Value | Type |
|---|
|
PYRIN
|
15 |
96 |
5.44e-27 |
SMART |
|
low complexity region
|
158 |
169 |
N/A |
INTRINSIC |
|
Pfam:NACHT
|
194 |
363 |
5.5e-43 |
PFAM |
|
coiled coil region
|
590 |
617 |
N/A |
INTRINSIC |
|
low complexity region
|
680 |
694 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
702 |
750 |
1.26e-5 |
PROSPERO |
|
internal_repeat_1
|
815 |
863 |
1.26e-5 |
PROSPERO |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000184560
|
| SMART Domains |
Protein: ENSMUSP00000139170
Gene: ENSMUSG00000038745
| Domain | Start | End | E-Value | Type |
|---|
|
PYRIN
|
45 |
126 |
5.44e-27 |
SMART |
|
low complexity region
|
188 |
199 |
N/A |
INTRINSIC |
|
Pfam:NACHT
|
224 |
393 |
8.2e-43 |
PFAM |
|
coiled coil region
|
620 |
647 |
N/A |
INTRINSIC |
|
low complexity region
|
710 |
724 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
732 |
780 |
1.55e-5 |
PROSPERO |
|
internal_repeat_1
|
845 |
893 |
1.55e-5 |
PROSPERO |
|
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.3%
- 10x: 96.1%
- 20x: 92.0%
|
| Validation Efficiency |
100% (28/28) |
| MGI Phenotype |
FUNCTION: The protein encoded by this gene binds arginine-vasopressin and may be involved in the arginine-vasopressin-mediated regulation of renal salt-water balance. The encoded protein also mediates inflammatory responses in the colon to allow recovery from intestinal epithelial damage and protects against tumorigenesis and the development of colitis. Finally, this protein can increase activation of NF-kappa-B, activation of CASP1 through interaction with ASC, and cAMP accumulation. [provided by RefSeq, Feb 2013]
PHENOTYPE: Nullizygous mutations lead to altered colonic microbiota, increased susceptibility to induced colitis and/or inflammation-associated colon tumorigenesis. Homozygotes for a null allele show lower blood pressure and sex-specific changes in urine concentrating ability, cognition, and anxiety behavior. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 38 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abca1 |
G |
A |
4: 53,059,253 (GRCm39) |
|
probably benign |
Het |
| Actl6a |
T |
C |
3: 32,776,759 (GRCm39) |
|
probably benign |
Het |
| Aoc1l1 |
A |
T |
6: 48,952,767 (GRCm39) |
T231S |
probably benign |
Het |
| Aox1 |
T |
C |
1: 58,385,371 (GRCm39) |
|
probably benign |
Het |
| Arrdc3 |
A |
G |
13: 81,031,973 (GRCm39) |
T69A |
probably damaging |
Het |
| Bbs2 |
T |
C |
8: 94,808,627 (GRCm39) |
K360R |
probably null |
Het |
| Cdh8 |
A |
T |
8: 100,006,250 (GRCm39) |
N112K |
probably damaging |
Het |
| Ces5a |
A |
T |
8: 94,228,809 (GRCm39) |
F474I |
probably damaging |
Het |
| Dync1i1 |
G |
A |
6: 5,915,876 (GRCm39) |
D253N |
probably damaging |
Het |
| Fam151b |
T |
C |
13: 92,610,480 (GRCm39) |
D103G |
probably damaging |
Het |
| Fam227b |
A |
G |
2: 125,845,759 (GRCm39) |
L410P |
probably damaging |
Het |
| Ihh |
A |
T |
1: 74,990,372 (GRCm39) |
M1K |
probably null |
Het |
| Itga6 |
A |
G |
2: 71,669,060 (GRCm39) |
T617A |
probably benign |
Het |
| Itpr1 |
T |
A |
6: 108,363,609 (GRCm39) |
C744S |
probably benign |
Het |
| Kif5a |
T |
C |
10: 127,081,311 (GRCm39) |
I208V |
probably benign |
Het |
| Lama4 |
A |
G |
10: 38,937,387 (GRCm39) |
K659R |
probably benign |
Het |
| Lpin3 |
T |
A |
2: 160,734,310 (GRCm39) |
|
probably null |
Het |
| Macf1 |
T |
A |
4: 123,270,309 (GRCm39) |
E6612V |
probably damaging |
Het |
| Naip2 |
T |
C |
13: 100,298,362 (GRCm39) |
E558G |
probably benign |
Het |
| Ncdn |
T |
C |
4: 126,643,833 (GRCm39) |
K330E |
probably benign |
Het |
| Neb |
C |
T |
2: 52,073,287 (GRCm39) |
D1975N |
possibly damaging |
Het |
| Nell1 |
T |
A |
7: 50,503,621 (GRCm39) |
N675K |
possibly damaging |
Het |
| Or4f47 |
G |
A |
2: 111,972,968 (GRCm39) |
R226H |
probably benign |
Het |
| Rnf43 |
A |
G |
11: 87,625,003 (GRCm39) |
E737G |
possibly damaging |
Het |
| Sardh |
C |
A |
2: 27,129,473 (GRCm39) |
W275L |
probably damaging |
Het |
| Sel1l2 |
C |
T |
2: 140,071,979 (GRCm39) |
|
probably benign |
Het |
| Sipa1l2 |
G |
A |
8: 126,176,712 (GRCm39) |
H1185Y |
probably damaging |
Het |
| Skp2 |
G |
A |
15: 9,117,012 (GRCm39) |
Q298* |
probably null |
Het |
| Spag16 |
G |
A |
1: 69,934,439 (GRCm39) |
|
probably benign |
Het |
| Spink14 |
A |
G |
18: 44,161,896 (GRCm39) |
|
probably benign |
Het |
| Stk4 |
C |
T |
2: 163,942,448 (GRCm39) |
T360M |
probably benign |
Het |
| Stx12 |
T |
A |
4: 132,598,960 (GRCm39) |
I43L |
probably benign |
Het |
| Tmc1 |
T |
A |
19: 20,793,548 (GRCm39) |
I538F |
possibly damaging |
Het |
| Tollip |
T |
C |
7: 141,438,292 (GRCm39) |
M209V |
probably benign |
Het |
| Ttn |
A |
T |
2: 76,643,312 (GRCm39) |
S13202R |
probably damaging |
Het |
| Vmn2r60 |
T |
A |
7: 41,786,211 (GRCm39) |
V338D |
probably damaging |
Het |
| Vwa8 |
T |
C |
14: 79,263,471 (GRCm39) |
L767P |
probably damaging |
Het |
| Zfp202 |
C |
T |
9: 40,122,792 (GRCm39) |
T518I |
probably damaging |
Het |
|
| Other mutations in Nlrp6 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00561:Nlrp6
|
APN |
7 |
140,503,037 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01066:Nlrp6
|
APN |
7 |
140,501,709 (GRCm39) |
missense |
possibly damaging |
0.88 |
|
IGL01966:Nlrp6
|
APN |
7 |
140,505,103 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02625:Nlrp6
|
APN |
7 |
140,503,413 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02792:Nlrp6
|
APN |
7 |
140,502,348 (GRCm39) |
missense |
probably damaging |
0.97 |
|
IGL02813:Nlrp6
|
APN |
7 |
140,503,333 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
IGL03140:Nlrp6
|
APN |
7 |
140,507,400 (GRCm39) |
missense |
probably benign |
0.01 |
|
R0608:Nlrp6
|
UTSW |
7 |
140,503,399 (GRCm39) |
nonsense |
probably null |
|
|
R1404:Nlrp6
|
UTSW |
7 |
140,504,026 (GRCm39) |
small deletion |
probably benign |
|
|
R1472:Nlrp6
|
UTSW |
7 |
140,503,408 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1587:Nlrp6
|
UTSW |
7 |
140,502,959 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1843:Nlrp6
|
UTSW |
7 |
140,503,006 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1959:Nlrp6
|
UTSW |
7 |
140,504,026 (GRCm39) |
small deletion |
probably benign |
|
|
R2097:Nlrp6
|
UTSW |
7 |
140,503,117 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2118:Nlrp6
|
UTSW |
7 |
140,506,357 (GRCm39) |
missense |
probably benign |
0.11 |
|
R2119:Nlrp6
|
UTSW |
7 |
140,506,357 (GRCm39) |
missense |
probably benign |
0.11 |
|
R2120:Nlrp6
|
UTSW |
7 |
140,506,357 (GRCm39) |
missense |
probably benign |
0.11 |
|
R2121:Nlrp6
|
UTSW |
7 |
140,506,357 (GRCm39) |
missense |
probably benign |
0.11 |
|
R2290:Nlrp6
|
UTSW |
7 |
140,502,076 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3546:Nlrp6
|
UTSW |
7 |
140,506,682 (GRCm39) |
missense |
probably benign |
0.00 |
|
R3547:Nlrp6
|
UTSW |
7 |
140,506,682 (GRCm39) |
missense |
probably benign |
0.00 |
|
R3970:Nlrp6
|
UTSW |
7 |
140,501,568 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4483:Nlrp6
|
UTSW |
7 |
140,501,694 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4484:Nlrp6
|
UTSW |
7 |
140,501,694 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4869:Nlrp6
|
UTSW |
7 |
140,504,006 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4962:Nlrp6
|
UTSW |
7 |
140,503,497 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5436:Nlrp6
|
UTSW |
7 |
140,502,630 (GRCm39) |
nonsense |
probably null |
|
|
R5442:Nlrp6
|
UTSW |
7 |
140,502,103 (GRCm39) |
missense |
probably benign |
0.01 |
|
R5924:Nlrp6
|
UTSW |
7 |
140,503,403 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5936:Nlrp6
|
UTSW |
7 |
140,502,725 (GRCm39) |
nonsense |
probably null |
|
|
R6124:Nlrp6
|
UTSW |
7 |
140,503,160 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6455:Nlrp6
|
UTSW |
7 |
140,507,422 (GRCm39) |
missense |
possibly damaging |
0.65 |
|
R6480:Nlrp6
|
UTSW |
7 |
140,507,356 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R6873:Nlrp6
|
UTSW |
7 |
140,503,433 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7061:Nlrp6
|
UTSW |
7 |
140,502,780 (GRCm39) |
missense |
probably benign |
0.36 |
|
R7350:Nlrp6
|
UTSW |
7 |
140,501,191 (GRCm39) |
start gained |
probably benign |
|
|
R7532:Nlrp6
|
UTSW |
7 |
140,505,097 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7752:Nlrp6
|
UTSW |
7 |
140,507,353 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R7901:Nlrp6
|
UTSW |
7 |
140,507,353 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R8098:Nlrp6
|
UTSW |
7 |
140,503,168 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8381:Nlrp6
|
UTSW |
7 |
140,503,754 (GRCm39) |
missense |
possibly damaging |
0.47 |
|
R8513:Nlrp6
|
UTSW |
7 |
140,502,743 (GRCm39) |
missense |
possibly damaging |
0.83 |
|
R9114:Nlrp6
|
UTSW |
7 |
140,506,332 (GRCm39) |
missense |
probably damaging |
1.00 |
|
V7732:Nlrp6
|
UTSW |
7 |
140,506,561 (GRCm39) |
splice site |
probably benign |
|
|
Z1176:Nlrp6
|
UTSW |
7 |
140,502,634 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- TGCAGAAGCTCCTGAACTCTGACG -3'
(R):5'- ATGGGTAAAGCAGTCCTGAGGTCC -3'
Sequencing Primer
(F):5'- gaggaggaggaggaggaag -3'
(R):5'- AGTCCTGAGGTCCGCTCC -3'
|
| Posted On |
2014-05-09 |
Incidental Mutation