Mutagenetix > Incidental Mutation

Incidental Mutation 'R1655:Ralyl'

189006

Institutional Source

Beutler Lab

Gene Symbol

Ralyl

Ensembl Gene

ENSMUSG00000039717

Gene Name

RALY RNA binding protein-like

Synonyms

MMRRC Submission

039691-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.156) question?

Stock #

R1655 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

13471655-14182287 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 14107236 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Phenylalanine at position 55 (Y55F)

Ref Sequence

ENSEMBL: ENSMUSP00000104009 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000108372] [ENSMUST00000171075] [ENSMUST00000192209] [ENSMUST00000193117] [ENSMUST00000211860]

AlphaFold

Q8BTF8

Predicted Effect

probably damaging
Transcript: ENSMUST00000108372
AA Change: Y55F

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000104009
Gene: ENSMUSG00000039717
AA Change: Y55F

Domain	Start	End	E-Value	Type
low complexity region	53	69	N/A	INTRINSIC
coiled coil region	119	182	N/A	INTRINSIC
low complexity region	201	214	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000171075

SMART Domains

Protein: ENSMUSP00000125848
Gene: ENSMUSG00000039717

Domain	Start	End	E-Value	Type
low complexity region	53	69	N/A	INTRINSIC
coiled coil region	119	156	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000192209
AA Change: Y55F

PolyPhen 2 Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000142094
Gene: ENSMUSG00000039717
AA Change: Y55F

Domain	Start	End	E-Value	Type
low complexity region	53	69	N/A	INTRINSIC
coiled coil region	119	156	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000193117
AA Change: Y128F

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

Predicted Effect

probably damaging
Transcript: ENSMUST00000211860
AA Change: Y142F

PolyPhen 2 Score 0.980 (Sensitivity: 0.75; Specificity: 0.96)

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.0%
20x: 91.3%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A730061H03Rik	A	T	14: 55,560,333 (GRCm38)		probably benign	Het
Abca1	C	T	4: 53,050,964 (GRCm38)	A1582T	probably benign	Het
Acot8	A	T	2: 164,803,108 (GRCm38)	S52T	probably benign	Het
Atcay	C	T	10: 81,213,397 (GRCm38)	V124M	probably damaging	Het
Cep295	C	T	9: 15,340,883 (GRCm38)	E397K	probably damaging	Het
Cfap46	A	T	7: 139,642,520 (GRCm38)	Y1180*	probably null	Het
Clptm1	T	A	7: 19,645,867 (GRCm38)	H148L	probably benign	Het
Clstn3	A	G	6: 124,437,427 (GRCm38)	L743P	probably damaging	Het
Crtc3	A	T	7: 80,598,776 (GRCm38)	M313K	possibly damaging	Het
Csgalnact1	T	A	8: 68,373,689 (GRCm38)	I326F	possibly damaging	Het
Dennd6b	G	T	15: 89,196,340 (GRCm38)	T19K	unknown	Het
Disp1	A	T	1: 183,087,004 (GRCm38)	I1284N	probably benign	Het
Dnah2	A	G	11: 69,473,854 (GRCm38)	Y1992H	probably damaging	Het
Dnah6	C	T	6: 73,205,732 (GRCm38)	V205I	possibly damaging	Het
Dst	G	T	1: 34,282,576 (GRCm38)	G4391*	probably null	Het
Dytn	A	G	1: 63,661,198 (GRCm38)	S258P	probably damaging	Het
Emilin3	T	A	2: 160,910,866 (GRCm38)		probably null	Het
Ermn	C	T	2: 58,052,584 (GRCm38)	V45I	probably benign	Het
Fat4	T	C	3: 38,957,318 (GRCm38)	V2189A	probably damaging	Het
Fcgbpl1	A	T	7: 28,147,110 (GRCm38)	N1076Y	probably damaging	Het
Filip1l	T	C	16: 57,571,851 (GRCm38)	I934T	probably damaging	Het
Gbp9	T	A	5: 105,081,692 (GRCm38)	Q472L	possibly damaging	Het
Gimap5	G	T	6: 48,753,176 (GRCm38)	E227*	probably null	Het
Gsdmc	C	T	15: 63,780,043 (GRCm38)	V240M	probably benign	Het
H2-Q4	G	T	17: 35,382,905 (GRCm38)	V248F	probably damaging	Het
Helz2	T	C	2: 181,234,147 (GRCm38)	E1518G	probably damaging	Het
Hmcn1	A	G	1: 150,630,333 (GRCm38)	V3814A	probably benign	Het
Hoatz	A	T	9: 51,083,621 (GRCm38)	I136N	probably damaging	Het
Ifna7	A	G	4: 88,816,660 (GRCm38)	T145A	probably benign	Het
Itgam	T	A	7: 128,115,163 (GRCm38)	M947K	probably benign	Het
Itpr2	T	G	6: 146,376,148 (GRCm38)	N608H	probably damaging	Het
Klra2	T	A	6: 131,220,211 (GRCm38)	N242I	probably damaging	Het
Lonrf2	A	T	1: 38,811,824 (GRCm38)	L219Q	probably damaging	Het
Ly6c2	T	C	15: 75,108,563 (GRCm38)	I126V	probably benign	Het
Mr1	G	A	1: 155,132,455 (GRCm38)	T258M	probably benign	Het
Mrps35	T	G	6: 147,060,228 (GRCm38)	D200E	possibly damaging	Het
Nbeal2	A	C	9: 110,632,872 (GRCm38)	S1506A	probably damaging	Het
Ncoa7	T	C	10: 30,698,245 (GRCm38)		probably null	Het
Nlrp4a	A	T	7: 26,449,651 (GRCm38)	I228F	possibly damaging	Het
Or13p5	A	G	4: 118,734,999 (GRCm38)	S157G	probably benign	Het
Or5c1	A	G	2: 37,331,939 (GRCm38)	Y64C	probably damaging	Het
Or5p59	A	T	7: 108,103,464 (GRCm38)	I52F	probably damaging	Het
Or8k3	A	G	2: 86,228,080 (GRCm38)	V297A	possibly damaging	Het
Paxx	T	C	2: 25,460,316 (GRCm38)	E93G	probably damaging	Het
Per2	C	A	1: 91,448,768 (GRCm38)	G128W	probably damaging	Het
Piezo1	A	G	8: 122,496,822 (GRCm38)	I796T	probably benign	Het
Pkhd1	A	G	1: 20,584,129 (GRCm38)	S235P	probably damaging	Het
Pole	T	A	5: 110,335,922 (GRCm38)	F259Y	probably damaging	Het
Pus7	T	A	5: 23,747,800 (GRCm38)	K512*	probably null	Het
Rgs14	T	A	13: 55,383,534 (GRCm38)	M451K	probably benign	Het
Rhag	T	C	17: 40,831,596 (GRCm38)	F231L	probably damaging	Het
Ric8a	T	C	7: 140,860,895 (GRCm38)	C94R	probably benign	Het
Rictor	T	A	15: 6,772,212 (GRCm38)	D460E	probably benign	Het
Rpn1	T	C	6: 88,100,944 (GRCm38)	V454A	possibly damaging	Het
Sacs	A	G	14: 61,191,782 (GRCm38)	D427G	probably benign	Het
Scai	A	T	2: 39,080,117 (GRCm38)	V545D	possibly damaging	Het
Serpinb3a	A	G	1: 107,046,212 (GRCm38)	V323A	probably damaging	Het
Slc13a5	C	A	11: 72,257,378 (GRCm38)	C277F	probably benign	Het
Slc15a1	A	T	14: 121,465,899 (GRCm38)	Y557N	probably benign	Het
Slc34a2	T	C	5: 53,069,419 (GRCm38)	V628A	probably benign	Het
Slc8a2	G	T	7: 16,141,135 (GRCm38)	G436V	probably damaging	Het
Sphkap	G	A	1: 83,277,515 (GRCm38)	R838*	probably null	Het
Supt5	T	C	7: 28,330,024 (GRCm38)	I103V	probably benign	Het
Tdrd1	T	A	19: 56,843,216 (GRCm38)	Y346*	probably null	Het
Tg	T	G	15: 66,828,568 (GRCm38)		probably null	Het
Top1	T	A	2: 160,703,696 (GRCm38)		probably null	Het
Trmt12	T	C	15: 58,873,227 (GRCm38)	L158P	probably damaging	Het
Tssk4	A	G	14: 55,651,695 (GRCm38)	N226S	probably damaging	Het
Unc80	G	T	1: 66,672,756 (GRCm38)	V2746F	possibly damaging	Het
Usp34	T	A	11: 23,375,051 (GRCm38)	V999E	probably benign	Het
Virma	T	C	4: 11,494,786 (GRCm38)	V29A	probably damaging	Het
Zfp40	A	T	17: 23,177,266 (GRCm38)	Y48N	probably benign	Het
Zfp609	A	G	9: 65,703,554 (GRCm38)	V709A	possibly damaging	Het

Other mutations in Ralyl

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02508:Ralyl	APN	3	14,107,272 (GRCm38)	splice site	probably benign
IGL02626:Ralyl	APN	3	13,777,034 (GRCm38)	missense	probably benign	0.00
IGL02950:Ralyl	APN	3	14,039,721 (GRCm38)	missense	probably damaging	1.00
PIT4498001:Ralyl	UTSW	3	14,107,239 (GRCm38)	missense	probably damaging	0.99
R0853:Ralyl	UTSW	3	13,946,506 (GRCm38)	missense	probably damaging	1.00
R1061:Ralyl	UTSW	3	14,115,701 (GRCm38)	missense	probably damaging	1.00
R1068:Ralyl	UTSW	3	13,776,889 (GRCm38)	missense	probably damaging	1.00
R1796:Ralyl	UTSW	3	14,143,433 (GRCm38)	missense	possibly damaging	0.77
R1838:Ralyl	UTSW	3	14,143,412 (GRCm38)	missense	probably damaging	1.00
R4706:Ralyl	UTSW	3	14,039,790 (GRCm38)	critical splice donor site	probably null
R5505:Ralyl	UTSW	3	13,776,920 (GRCm38)	missense	probably damaging	1.00
R5510:Ralyl	UTSW	3	13,776,945 (GRCm38)	missense	probably damaging	1.00
R6844:Ralyl	UTSW	3	13,776,878 (GRCm38)	missense	probably damaging	1.00
R6919:Ralyl	UTSW	3	13,777,031 (GRCm38)	missense	probably damaging	1.00
R7876:Ralyl	UTSW	3	14,039,790 (GRCm38)	critical splice donor site	probably null
R8297:Ralyl	UTSW	3	14,039,776 (GRCm38)	missense	probably benign	0.33
R9292:Ralyl	UTSW	3	14,107,252 (GRCm38)	missense	probably benign	0.06
R9686:Ralyl	UTSW	3	13,776,827 (GRCm38)	splice site	probably benign

Predicted Primers

PCR Primer
(F):5'- CCTTTCAGTCATAAAGAggctctgtaaacat -3'
(R):5'- tttgtACATGAATGCATGAGAAGAAAGAGGA -3'

Sequencing Primer
(F):5'- acagaggaaagtgggaaatgg -3'
(R):5'- AGGAGGTATGTCAGAGGAAAAC -3'

Posted On

2014-05-09