Mutagenetix > Incidental Mutation

Incidental Mutation 'R0026:Cyp4b1'

189164

Institutional Source

Beutler Lab

Gene Symbol

Cyp4b1

Ensembl Gene

ENSMUSG00000028713

Gene Name

cytochrome P450, family 4, subfamily b, polypeptide 1

Synonyms

MMRRC Submission

038321-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0026 (G1)

Quality Score

Status

Validated

Chromosome

Chromosomal Location

115624725-115647723 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 115647521 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glycine to Aspartic acid at position 56 (G56D)

Ref Sequence

ENSEMBL: ENSMUSP00000099768 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000102707]

AlphaFold

Q64462

Predicted Effect

possibly damaging
Transcript: ENSMUST00000102707
AA Change: G56D

PolyPhen 2 Score 0.947 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000099768
Gene: ENSMUSG00000028713
AA Change: G56D

Domain	Start	End	E-Value	Type
transmembrane domain	13	35	N/A	INTRINSIC
Pfam:p450	46	501	1.3e-130	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000119777

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 99.3%
3x: 98.9%
10x: 97.8%
20x: 96.3%

Validation Efficiency

93% (70/75)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and other lipids. This protein localizes to the endoplasmic reticulum. In rodents, the homologous protein has been shown to metabolize certain carcinogens; however, the specific function of the human protein has not been determined. Multiple transcript variants have been found for this gene. [provided by RefSeq, Jan 2016]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit resistance to 4-ipomeanol activation and toxicity. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110002E22Rik	T	A	3: 138,066,805 (GRCm38)	I585N	possibly damaging	Het
4931408C20Rik	T	A	1: 26,683,369 (GRCm38)	D910V	probably benign	Het
A830005F24Rik	C	T	13: 48,514,372 (GRCm38)		probably benign	Het
Abca16	C	T	7: 120,477,923 (GRCm38)		probably benign	Het
Acot10	G	A	15: 20,666,236 (GRCm38)	L140F	probably benign	Het
Adam19	G	T	11: 46,136,259 (GRCm38)	C573F	probably damaging	Het
Aff3	A	G	1: 38,203,893 (GRCm38)	S948P	probably benign	Het
Anxa3	T	A	5: 96,838,401 (GRCm38)	Y300N	probably benign	Het
BC016579	T	C	16: 45,640,367 (GRCm38)	T113A	probably benign	Het
Bmpr1b	A	G	3: 141,870,733 (GRCm38)	L113P	probably benign	Het
Casq1	T	C	1: 172,219,400 (GRCm38)		probably benign	Het
Cdc16	T	A	8: 13,759,130 (GRCm38)		probably null	Het
Cep135	C	T	5: 76,606,734 (GRCm38)	R353*	probably null	Het
Cma1	A	T	14: 55,942,164 (GRCm38)	C188S	probably damaging	Het
Csf3r	A	G	4: 126,031,884 (GRCm38)	T151A	probably benign	Het
Dbn1	T	C	13: 55,477,784 (GRCm38)	E275G	probably damaging	Het
Dlgap2	C	T	8: 14,727,363 (GRCm38)	Q203*	probably null	Het
Ephb3	A	G	16: 21,214,917 (GRCm38)	D251G	probably damaging	Het
Fancd2os	G	T	6: 113,597,691 (GRCm38)	T118N	probably damaging	Het
Gm10801	T	C	2: 98,663,909 (GRCm38)		probably benign	Het
Got1l1	C	T	8: 27,200,248 (GRCm38)	V132I	probably benign	Het
H2-M9	T	C	17: 36,641,527 (GRCm38)		probably benign	Het
Ibtk	A	G	9: 85,690,303 (GRCm38)	V1278A	probably benign	Het
Kctd3	T	C	1: 188,976,621 (GRCm38)	T519A	probably damaging	Het
Lgsn	T	A	1: 31,203,443 (GRCm38)	V202D	probably damaging	Het
Madd	A	G	2: 91,175,708 (GRCm38)	F381L	possibly damaging	Het
Map1s	G	A	8: 70,914,638 (GRCm38)	G729D	probably damaging	Het
Mlycd	A	G	8: 119,410,435 (GRCm38)	I465V	probably benign	Het
Mrgprb1	T	C	7: 48,447,204 (GRCm38)	R108G	possibly damaging	Het
Mrgprx2	T	A	7: 48,482,023 (GRCm38)	H106L	possibly damaging	Het
Ncor1	T	C	11: 62,438,429 (GRCm38)	Y6C	probably damaging	Het
Nfkb1	T	C	3: 135,591,573 (GRCm38)	D773G	probably damaging	Het
Nxnl1	A	G	8: 71,566,573 (GRCm38)	S3P	probably damaging	Het
Olfr109	T	A	17: 37,466,803 (GRCm38)	V199D	probably damaging	Het
Olfr921	G	A	9: 38,775,596 (GRCm38)	V114I	probably benign	Het
Otud7a	T	C	7: 63,735,801 (GRCm38)	F338L	probably benign	Het
Pdcl3	T	A	1: 38,991,280 (GRCm38)	L14Q	probably damaging	Het
Pla2g7	T	A	17: 43,594,930 (GRCm38)		probably benign	Het
Prpf31	T	A	7: 3,639,668 (GRCm38)	N413K	probably benign	Het
Rapgef5	T	C	12: 117,689,161 (GRCm38)	S307P	probably benign	Het
Relt	C	A	7: 100,850,221 (GRCm38)	E164*	probably null	Het
Rnf185	T	C	11: 3,426,617 (GRCm38)	D86G	probably damaging	Het
Rrm2b	T	C	15: 37,953,741 (GRCm38)	E21G	probably benign	Het
Scn5a	A	G	9: 119,522,566 (GRCm38)	I783T	probably damaging	Het
Senp1	T	C	15: 98,076,668 (GRCm38)	R88G	probably damaging	Het
Skint5	A	T	4: 113,546,468 (GRCm38)		probably benign	Het
Slc35b1	T	C	11: 95,390,642 (GRCm38)	S294P	probably benign	Het
Slc5a2	T	A	7: 128,270,053 (GRCm38)	I335N	probably damaging	Het
Sstr1	T	A	12: 58,212,858 (GRCm38)	M89K	probably damaging	Het
Szt2	A	T	4: 118,384,772 (GRCm38)	S1612R	possibly damaging	Het
Taf1c	T	C	8: 119,604,236 (GRCm38)		probably null	Het
Taf1d	T	A	9: 15,308,648 (GRCm38)	S64R	probably damaging	Het
Tmem125	A	G	4: 118,542,073 (GRCm38)	S54P	possibly damaging	Het
Ttf1	T	A	2: 29,071,349 (GRCm38)	I583N	possibly damaging	Het
Uchl4	A	T	9: 64,235,371 (GRCm38)		probably null	Het
Unc5b	A	T	10: 60,774,592 (GRCm38)	I482N	possibly damaging	Het
Unc80	C	A	1: 66,521,584 (GRCm38)	Q824K	probably benign	Het
Utrn	T	C	10: 12,726,196 (GRCm38)		probably benign	Het
Vmn2r61	T	G	7: 42,275,474 (GRCm38)	I484R	possibly damaging	Het
Vps13b	T	C	15: 35,923,301 (GRCm38)	I3774T	possibly damaging	Het
Yipf1	T	A	4: 107,345,160 (GRCm38)	L240*	probably null	Het

Other mutations in Cyp4b1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01677:Cyp4b1	APN	4	115,636,282 (GRCm38)	missense	probably damaging	0.97
IGL02484:Cyp4b1	APN	4	115,647,557 (GRCm38)	missense	probably benign	0.00
IGL03111:Cyp4b1	APN	4	115,635,869 (GRCm38)	splice site	probably benign
IGL03340:Cyp4b1	APN	4	115,641,879 (GRCm38)	missense	probably damaging	1.00
R0026:Cyp4b1	UTSW	4	115,647,521 (GRCm38)	missense	possibly damaging	0.95
R0143:Cyp4b1	UTSW	4	115,635,874 (GRCm38)	missense	probably damaging	0.99
R0532:Cyp4b1	UTSW	4	115,626,876 (GRCm38)	missense	probably damaging	1.00
R0725:Cyp4b1	UTSW	4	115,626,827 (GRCm38)	missense	probably damaging	1.00
R0970:Cyp4b1	UTSW	4	115,635,636 (GRCm38)	missense	probably benign	0.07
R1084:Cyp4b1	UTSW	4	115,640,312 (GRCm38)	missense	probably benign	0.00
R1570:Cyp4b1	UTSW	4	115,635,963 (GRCm38)	missense	probably benign	0.00
R1626:Cyp4b1	UTSW	4	115,641,658 (GRCm38)	missense	probably damaging	1.00
R1966:Cyp4b1	UTSW	4	115,625,879 (GRCm38)	missense	probably benign	0.13
R2279:Cyp4b1	UTSW	4	115,640,360 (GRCm38)	missense	probably benign	0.23
R2396:Cyp4b1	UTSW	4	115,641,646 (GRCm38)	missense	probably benign	0.43
R2679:Cyp4b1	UTSW	4	115,628,697 (GRCm38)	missense	probably benign	0.01
R2885:Cyp4b1	UTSW	4	115,635,652 (GRCm38)	missense	probably damaging	1.00
R3176:Cyp4b1	UTSW	4	115,625,850 (GRCm38)	missense	possibly damaging	0.87
R3276:Cyp4b1	UTSW	4	115,625,850 (GRCm38)	missense	possibly damaging	0.87
R4375:Cyp4b1	UTSW	4	115,636,313 (GRCm38)	missense	probably benign	0.35
R7221:Cyp4b1	UTSW	4	115,635,978 (GRCm38)	missense	possibly damaging	0.92
R7584:Cyp4b1	UTSW	4	115,628,687 (GRCm38)	missense	probably damaging	0.98
R7699:Cyp4b1	UTSW	4	115,641,965 (GRCm38)	missense	probably benign	0.06
R8867:Cyp4b1	UTSW	4	115,635,972 (GRCm38)	missense	possibly damaging	0.78
R9076:Cyp4b1	UTSW	4	115,625,227 (GRCm38)	missense	probably damaging	1.00
R9440:Cyp4b1	UTSW	4	115,636,384 (GRCm38)	missense	probably damaging	0.99
X0058:Cyp4b1	UTSW	4	115,628,778 (GRCm38)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- TGCTTCTGAAGCCAGCTTGAAAGTC -3'
(R):5'- TCTCTGCTCCAAGAGACCAAGGTG -3'

Sequencing Primer
(F):5'- AGCCTCTTGTCTAAATTGATGACC -3'
(R):5'- CAGTGCCCGTATCCAGAGTATAAG -3'

Posted On

2014-05-13