Incidental Mutation 'R1686:Wdhd1'
ID 189374
Institutional Source Beutler Lab
Gene Symbol Wdhd1
Ensembl Gene ENSMUSG00000037572
Gene Name WD repeat and HMG-box DNA binding protein 1
Synonyms AND-1, D630024B06Rik
MMRRC Submission 039719-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R1686 (G1)
Quality Score 225
Status Validated
Chromosome 14
Chromosomal Location 47478401-47514314 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 47493672 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Isoleucine at position 16 (N16I)
Ref Sequence ENSEMBL: ENSMUSP00000154026 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000111790] [ENSMUST00000111791] [ENSMUST00000111792] [ENSMUST00000187531] [ENSMUST00000227041]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000111790
SMART Domains Protein: ENSMUSP00000107420
Gene: ENSMUSG00000037572

DomainStartEndE-ValueType
WD40 4 41 8.62e-4 SMART
WD40 83 122 8.91e-1 SMART
WD40 125 164 1.67e-10 SMART
WD40 217 258 6.19e-1 SMART
WD40 261 301 5.11e1 SMART
low complexity region 353 363 N/A INTRINSIC
Pfam:DUF3639 525 551 2.4e-13 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000111791
AA Change: N644I

PolyPhen 2 Score 0.986 (Sensitivity: 0.74; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000107421
Gene: ENSMUSG00000037572
AA Change: N644I

DomainStartEndE-ValueType
WD40 4 41 8.62e-4 SMART
WD40 83 122 8.91e-1 SMART
WD40 125 164 1.67e-10 SMART
WD40 217 258 6.19e-1 SMART
WD40 261 301 5.11e1 SMART
low complexity region 353 363 N/A INTRINSIC
Pfam:Mcl1_mid 424 708 1.6e-103 PFAM
coiled coil region 802 834 N/A INTRINSIC
HMG 1003 1073 2.64e-12 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000111792
AA Change: N607I

PolyPhen 2 Score 0.337 (Sensitivity: 0.90; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000107422
Gene: ENSMUSG00000037572
AA Change: N607I

DomainStartEndE-ValueType
WD40 4 41 8.62e-4 SMART
WD40 83 122 8.91e-1 SMART
WD40 125 164 1.67e-10 SMART
WD40 217 258 6.19e-1 SMART
WD40 261 301 5.11e1 SMART
low complexity region 316 326 N/A INTRINSIC
Pfam:DUF3639 488 514 7.1e-13 PFAM
coiled coil region 765 797 N/A INTRINSIC
HMG 966 1036 2.64e-12 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000187531
AA Change: N644I

PolyPhen 2 Score 0.982 (Sensitivity: 0.75; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000141182
Gene: ENSMUSG00000037572
AA Change: N644I

DomainStartEndE-ValueType
WD40 4 41 8.62e-4 SMART
WD40 83 122 8.91e-1 SMART
WD40 125 164 1.67e-10 SMART
WD40 217 258 6.19e-1 SMART
WD40 261 301 5.11e1 SMART
low complexity region 353 363 N/A INTRINSIC
Pfam:DUF3639 525 551 3e-13 PFAM
coiled coil region 802 834 N/A INTRINSIC
HMG 1003 1073 2.64e-12 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000227041
AA Change: N16I

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
Meta Mutation Damage Score 0.8206 question?
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.4%
  • 10x: 96.4%
  • 20x: 92.9%
Validation Efficiency 100% (85/85)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene contains multiple N-terminal WD40 domains and a C-terminal high mobility group (HMG) box. WD40 domains are found in a variety of eukaryotic proteins and may function as adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly. HMG boxes are found in many eukaryotic proteins involved in chromatin assembly, transcription and replication. Alternative splicing results in two transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 79 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700017N19Rik G A 10: 100,448,722 (GRCm39) V400I probably damaging Het
Abcb1b A G 5: 8,848,782 (GRCm39) N14S probably damaging Het
Adamts14 A G 10: 61,034,439 (GRCm39) Y1150H probably benign Het
Adgrg3 A G 8: 95,759,997 (GRCm39) N72S probably benign Het
Akain1 T A 17: 69,746,527 (GRCm39) F3I possibly damaging Het
Akr1c21 T C 13: 4,627,452 (GRCm39) L182P probably damaging Het
Arhgap21 A T 2: 20,886,659 (GRCm39) Y12N probably damaging Het
Aup1 A T 6: 83,032,226 (GRCm39) H131L probably damaging Het
Bag6 A G 17: 35,363,928 (GRCm39) T812A possibly damaging Het
Bmp2k A G 5: 97,211,392 (GRCm39) Y520C unknown Het
Calm4 T G 13: 3,888,302 (GRCm39) V136G probably damaging Het
Catsper2 A G 2: 121,230,523 (GRCm39) probably null Het
Cc2d2a A G 5: 43,896,713 (GRCm39) T1537A possibly damaging Het
Cntn2 A T 1: 132,454,049 (GRCm39) V319D possibly damaging Het
Cux1 G A 5: 136,304,235 (GRCm39) R1314* probably null Het
Cxcl12 A G 6: 117,150,508 (GRCm39) I79V probably damaging Het
Cyp2j6 T C 4: 96,412,014 (GRCm39) D418G probably benign Het
Ddx28 G C 8: 106,737,190 (GRCm39) D289E probably damaging Het
Fabp3 C T 4: 130,206,180 (GRCm39) T57I probably benign Het
Fam135a A C 1: 24,068,887 (GRCm39) S448A probably benign Het
Fbxo33 G T 12: 59,251,626 (GRCm39) N30K possibly damaging Het
Fgf12 A C 16: 28,217,093 (GRCm39) Y21D probably damaging Het
Galntl5 C T 5: 25,415,432 (GRCm39) S288L probably benign Het
Gart G T 16: 91,422,237 (GRCm39) A760D probably damaging Het
Gba2 A T 4: 43,573,869 (GRCm39) probably benign Het
Gm10518 C A 1: 179,631,357 (GRCm39) S139* probably null Het
Gm4781 A T 10: 100,232,837 (GRCm39) noncoding transcript Het
Gm9790 A G 3: 85,823,156 (GRCm39) noncoding transcript Het
Gmps G A 3: 63,893,075 (GRCm39) G127R probably damaging Het
Golim4 A T 3: 75,802,443 (GRCm39) V283E probably benign Het
Gprc5a A T 6: 135,055,918 (GRCm39) I122F possibly damaging Het
Gzmc T C 14: 56,471,341 (GRCm39) K67E probably benign Het
Hapln3 C A 7: 78,771,638 (GRCm39) V84L probably benign Het
Hif3a T A 7: 16,778,789 (GRCm39) N377Y possibly damaging Het
Ifi211 G A 1: 173,726,969 (GRCm39) H392Y probably damaging Het
Iqgap3 T A 3: 88,015,663 (GRCm39) probably benign Het
Itga10 T A 3: 96,559,141 (GRCm39) F410Y probably damaging Het
Jup T C 11: 100,263,260 (GRCm39) Y705C probably damaging Het
Khsrp C T 17: 57,332,597 (GRCm39) A228T probably benign Het
Lmntd2 C T 7: 140,790,998 (GRCm39) G445D probably damaging Het
Lyst T C 13: 13,809,290 (GRCm39) V320A possibly damaging Het
Magel2 T A 7: 62,027,988 (GRCm39) H297Q possibly damaging Het
Mbd6 T C 10: 127,123,286 (GRCm39) E33G probably damaging Het
Mob3b A G 4: 34,985,910 (GRCm39) probably benign Het
Mroh2a T C 1: 88,162,334 (GRCm39) probably null Het
Mroh2a C T 1: 88,158,402 (GRCm39) R150* probably null Het
Mymk A T 2: 26,952,346 (GRCm39) W174R probably damaging Het
Nckap1 C T 2: 80,348,286 (GRCm39) S889N probably benign Het
Nipal3 T C 4: 135,174,599 (GRCm39) Y384C possibly damaging Het
Nt5c3b A G 11: 100,330,920 (GRCm39) probably benign Het
Obox6 T A 7: 15,567,750 (GRCm39) L232F probably damaging Het
Obscn A C 11: 58,997,113 (GRCm39) probably benign Het
Or7g12 T C 9: 18,899,839 (GRCm39) L185P probably damaging Het
Phkb A G 8: 86,748,278 (GRCm39) I706V probably benign Het
Plcb2 A G 2: 118,546,168 (GRCm39) probably benign Het
Plek2 T C 12: 78,941,184 (GRCm39) D216G probably damaging Het
Plxnb2 T C 15: 89,046,665 (GRCm39) Y855C probably damaging Het
Prkcz T C 4: 155,355,713 (GRCm39) T227A probably damaging Het
Psma7 A T 2: 179,679,215 (GRCm39) D184E probably benign Het
Rai14 T A 15: 10,592,282 (GRCm39) L204F probably damaging Het
Ralgapa2 A G 2: 146,199,920 (GRCm39) V1208A probably benign Het
Rapgef6 A G 11: 54,582,458 (GRCm39) R67G possibly damaging Het
Ryr2 C T 13: 11,618,665 (GRCm39) probably benign Het
Satb1 T C 17: 52,047,027 (GRCm39) S763G probably benign Het
Sdk1 A T 5: 142,020,292 (GRCm39) H690L probably benign Het
Sfrp5 A C 19: 42,190,143 (GRCm39) V103G possibly damaging Het
Six6 A G 12: 72,988,451 (GRCm39) E208G probably benign Het
Sspo A T 6: 48,437,334 (GRCm39) H1364L probably benign Het
Stard9 A T 2: 120,529,973 (GRCm39) T2077S probably benign Het
Tacr3 T C 3: 134,535,254 (GRCm39) L74P probably damaging Het
Tep1 T C 14: 51,074,245 (GRCm39) E1880G probably benign Het
Tgfb3 A T 12: 86,116,517 (GRCm39) probably benign Het
Thap7 G A 16: 17,346,576 (GRCm39) P136S probably damaging Het
Thoc2l T A 5: 104,667,789 (GRCm39) Y770* probably null Het
Tmc2 T C 2: 130,098,036 (GRCm39) V717A possibly damaging Het
Usp43 T A 11: 67,778,593 (GRCm39) S446C probably damaging Het
Vwa3a C T 7: 120,379,371 (GRCm39) S492L probably damaging Het
Wdr95 A T 5: 149,516,566 (GRCm39) D327V probably damaging Het
Zfp128 T G 7: 12,624,563 (GRCm39) Y310* probably null Het
Other mutations in Wdhd1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01335:Wdhd1 APN 14 47,488,239 (GRCm39) missense possibly damaging 0.87
IGL01789:Wdhd1 APN 14 47,512,274 (GRCm39) missense probably benign 0.10
IGL01981:Wdhd1 APN 14 47,498,907 (GRCm39) missense probably damaging 1.00
IGL02034:Wdhd1 APN 14 47,498,808 (GRCm39) missense probably benign 0.02
IGL02932:Wdhd1 APN 14 47,509,591 (GRCm39) critical splice donor site probably null
IGL02966:Wdhd1 APN 14 47,479,101 (GRCm39) missense possibly damaging 0.93
IGL03355:Wdhd1 APN 14 47,481,346 (GRCm39) missense possibly damaging 0.78
R0165:Wdhd1 UTSW 14 47,504,525 (GRCm39) missense probably benign 0.00
R0414:Wdhd1 UTSW 14 47,514,045 (GRCm39) missense probably benign
R0603:Wdhd1 UTSW 14 47,501,043 (GRCm39) missense probably damaging 1.00
R1503:Wdhd1 UTSW 14 47,484,857 (GRCm39) missense probably benign 0.00
R1539:Wdhd1 UTSW 14 47,482,507 (GRCm39) missense possibly damaging 0.63
R1541:Wdhd1 UTSW 14 47,505,649 (GRCm39) nonsense probably null
R1588:Wdhd1 UTSW 14 47,493,693 (GRCm39) missense probably damaging 1.00
R1916:Wdhd1 UTSW 14 47,496,034 (GRCm39) missense possibly damaging 0.89
R1952:Wdhd1 UTSW 14 47,507,647 (GRCm39) missense probably damaging 1.00
R2320:Wdhd1 UTSW 14 47,511,485 (GRCm39) missense probably benign 0.06
R2421:Wdhd1 UTSW 14 47,496,041 (GRCm39) missense probably benign 0.00
R3731:Wdhd1 UTSW 14 47,485,349 (GRCm39) missense possibly damaging 0.89
R3818:Wdhd1 UTSW 14 47,481,258 (GRCm39) critical splice donor site probably null
R3836:Wdhd1 UTSW 14 47,482,511 (GRCm39) missense probably benign 0.01
R4789:Wdhd1 UTSW 14 47,506,149 (GRCm39) missense probably benign 0.01
R4963:Wdhd1 UTSW 14 47,506,146 (GRCm39) missense possibly damaging 0.66
R4994:Wdhd1 UTSW 14 47,506,111 (GRCm39) critical splice donor site probably null
R5225:Wdhd1 UTSW 14 47,488,273 (GRCm39) missense probably benign 0.01
R5347:Wdhd1 UTSW 14 47,506,181 (GRCm39) nonsense probably null
R5377:Wdhd1 UTSW 14 47,509,678 (GRCm39) missense probably benign 0.15
R6038:Wdhd1 UTSW 14 47,501,037 (GRCm39) missense possibly damaging 0.89
R6038:Wdhd1 UTSW 14 47,501,037 (GRCm39) missense possibly damaging 0.89
R6046:Wdhd1 UTSW 14 47,510,667 (GRCm39) nonsense probably null
R6156:Wdhd1 UTSW 14 47,505,653 (GRCm39) missense probably damaging 0.99
R6289:Wdhd1 UTSW 14 47,495,953 (GRCm39) missense possibly damaging 0.95
R6298:Wdhd1 UTSW 14 47,510,579 (GRCm39) missense possibly damaging 0.67
R6345:Wdhd1 UTSW 14 47,489,379 (GRCm39) missense probably damaging 0.99
R6405:Wdhd1 UTSW 14 47,481,324 (GRCm39) missense possibly damaging 0.91
R6500:Wdhd1 UTSW 14 47,488,217 (GRCm39) splice site probably null
R6564:Wdhd1 UTSW 14 47,485,499 (GRCm39) missense probably benign
R6897:Wdhd1 UTSW 14 47,485,587 (GRCm39) missense probably damaging 1.00
R7262:Wdhd1 UTSW 14 47,489,430 (GRCm39) missense probably benign 0.08
R7444:Wdhd1 UTSW 14 47,489,405 (GRCm39) nonsense probably null
R7496:Wdhd1 UTSW 14 47,511,481 (GRCm39) missense probably benign 0.39
R7503:Wdhd1 UTSW 14 47,488,248 (GRCm39) missense probably benign 0.25
R8317:Wdhd1 UTSW 14 47,500,994 (GRCm39) missense probably damaging 1.00
R8323:Wdhd1 UTSW 14 47,512,252 (GRCm39) missense possibly damaging 0.85
R8331:Wdhd1 UTSW 14 47,509,702 (GRCm39) splice site probably null
R8338:Wdhd1 UTSW 14 47,506,120 (GRCm39) missense probably benign
R8363:Wdhd1 UTSW 14 47,513,989 (GRCm39) missense probably damaging 1.00
R8944:Wdhd1 UTSW 14 47,504,470 (GRCm39) missense probably benign
R8946:Wdhd1 UTSW 14 47,482,752 (GRCm39) missense probably benign 0.01
R9045:Wdhd1 UTSW 14 47,511,409 (GRCm39) missense probably benign 0.01
R9428:Wdhd1 UTSW 14 47,489,427 (GRCm39) nonsense probably null
R9444:Wdhd1 UTSW 14 47,488,324 (GRCm39) missense possibly damaging 0.85
R9491:Wdhd1 UTSW 14 47,505,616 (GRCm39) nonsense probably null
Predicted Primers PCR Primer
(F):5'- AATCTCGGTTGCCTTACtcagtctcta -3'
(R):5'- AAGCAACTCTGAATTATCTTCCCCAACTTT -3'

Sequencing Primer
(F):5'- accacactttaattttcccttcac -3'
(R):5'- TAGCTTTTGAAATTGAAGTTGGCTCC -3'
Posted On 2014-05-14