Incidental Mutation 'R1707:Cc2d2a'
ID 190139
Institutional Source Beutler Lab
Gene Symbol Cc2d2a
Ensembl Gene ENSMUSG00000039765
Gene Name coiled-coil and C2 domain containing 2A
Synonyms b2b1035Clo, 5730509K17Rik
MMRRC Submission 039740-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.874) question?
Stock # R1707 (G1)
Quality Score 225
Status Not validated
Chromosome 5
Chromosomal Location 43662346-43740972 bp(+) (GRCm38)
Type of Mutation splice site
DNA Base Change (assembly) T to A at 43723688 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000114349 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000048150] [ENSMUST00000048150] [ENSMUST00000125866] [ENSMUST00000125866]
AlphaFold Q8CFW7
Predicted Effect probably null
Transcript: ENSMUST00000048150
SMART Domains Protein: ENSMUSP00000048320
Gene: ENSMUSG00000039765

DomainStartEndE-ValueType
low complexity region 26 41 N/A INTRINSIC
low complexity region 58 67 N/A INTRINSIC
low complexity region 124 136 N/A INTRINSIC
low complexity region 203 217 N/A INTRINSIC
coiled coil region 472 501 N/A INTRINSIC
coiled coil region 553 582 N/A INTRINSIC
Pfam:CC2D2AN-C2 645 817 2e-36 PFAM
low complexity region 1005 1017 N/A INTRINSIC
low complexity region 1024 1036 N/A INTRINSIC
C2 1048 1208 3.43e-5 SMART
Predicted Effect probably null
Transcript: ENSMUST00000048150
SMART Domains Protein: ENSMUSP00000048320
Gene: ENSMUSG00000039765

DomainStartEndE-ValueType
low complexity region 26 41 N/A INTRINSIC
low complexity region 58 67 N/A INTRINSIC
low complexity region 124 136 N/A INTRINSIC
low complexity region 203 217 N/A INTRINSIC
coiled coil region 472 501 N/A INTRINSIC
coiled coil region 553 582 N/A INTRINSIC
Pfam:CC2D2AN-C2 645 817 2e-36 PFAM
low complexity region 1005 1017 N/A INTRINSIC
low complexity region 1024 1036 N/A INTRINSIC
C2 1048 1208 3.43e-5 SMART
Predicted Effect probably null
Transcript: ENSMUST00000125866
SMART Domains Protein: ENSMUSP00000114349
Gene: ENSMUSG00000039765

DomainStartEndE-ValueType
low complexity region 9 18 N/A INTRINSIC
low complexity region 75 87 N/A INTRINSIC
low complexity region 154 168 N/A INTRINSIC
coiled coil region 423 452 N/A INTRINSIC
coiled coil region 504 533 N/A INTRINSIC
Pfam:CC2D2AN-C2 596 768 7.7e-44 PFAM
low complexity region 970 982 N/A INTRINSIC
C2 994 1154 2.3e-7 SMART
Predicted Effect probably null
Transcript: ENSMUST00000125866
SMART Domains Protein: ENSMUSP00000114349
Gene: ENSMUSG00000039765

DomainStartEndE-ValueType
low complexity region 9 18 N/A INTRINSIC
low complexity region 75 87 N/A INTRINSIC
low complexity region 154 168 N/A INTRINSIC
coiled coil region 423 452 N/A INTRINSIC
coiled coil region 504 533 N/A INTRINSIC
Pfam:CC2D2AN-C2 596 768 7.7e-44 PFAM
low complexity region 970 982 N/A INTRINSIC
C2 994 1154 2.3e-7 SMART
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.4%
  • 10x: 96.4%
  • 20x: 92.9%
Validation Efficiency 96% (82/85)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a coiled-coil and calcium binding domain protein that appears to play a critical role in cilia formation. Mutations in this gene cause Meckel syndrome type 6, as well as Joubert syndrome type 9. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2009]
PHENOTYPE: Mice homozygous for a null allele exhibit embryonic lethality with multiorgan defects related to cilia biogenesis. Homozygotes for a gene trap allele show randomized body axis, holoprosencephaly, and microphthalmia. Homozygotes for an ENU-induced allele show heterotaxia, congenital heart anomalies, kidney and eye defects, polydactyly, and cleft palate. [provided by MGI curators]
Allele List at MGI

All alleles(5) : Targeted, other(4) Gene trapped(1)

Other mutations in this stock
Total: 83 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930523C07Rik A T 1: 160,070,802 (GRCm38) probably benign Het
4931429P17Rik A G 13: 47,961,005 (GRCm38) noncoding transcript Het
Acox3 T A 5: 35,601,564 (GRCm38) I373N possibly damaging Het
Adgrb1 G T 15: 74,529,343 (GRCm38) A63S probably damaging Het
Alkbh2 C T 5: 114,124,226 (GRCm38) E148K probably damaging Het
Aplp2 A T 9: 31,150,919 (GRCm38) H692Q probably damaging Het
Arhgap24 T C 5: 102,892,087 (GRCm38) S297P probably benign Het
Arhgap9 C T 10: 127,328,889 (GRCm38) P561S probably benign Het
Arhgef10l T G 4: 140,564,289 (GRCm38) D62A probably damaging Het
Asb14 T G 14: 26,901,122 (GRCm38) F150L probably benign Het
Atp8b3 A T 10: 80,521,801 (GRCm38) probably null Het
Atrnl1 A G 19: 57,686,737 (GRCm38) D686G probably benign Het
Bmpr1a A T 14: 34,425,141 (GRCm38) probably benign Het
C330027C09Rik A C 16: 49,018,404 (GRCm38) Q861H probably damaging Het
Ccin T A 4: 43,983,947 (GRCm38) I118N probably benign Het
Cd8b1 G A 6: 71,326,184 (GRCm38) G81D probably damaging Het
Cep126 G A 9: 8,100,382 (GRCm38) S717L probably benign Het
Colgalt2 C T 1: 152,400,363 (GRCm38) R76W probably damaging Het
Copg1 A T 6: 87,905,210 (GRCm38) T596S probably benign Het
Cpb1 G A 3: 20,275,491 (GRCm38) R24W probably damaging Het
Csad T A 15: 102,179,972 (GRCm38) D134V probably damaging Het
Dchs2 A G 3: 83,127,605 (GRCm38) probably benign Het
Ddb2 A G 2: 91,234,209 (GRCm38) W119R probably damaging Het
Dhx57 A T 17: 80,275,226 (GRCm38) S317T probably damaging Het
Dlc1 A G 8: 36,937,609 (GRCm38) V342A probably benign Het
Dpp4 G A 2: 62,359,335 (GRCm38) probably benign Het
Dst G T 1: 34,167,646 (GRCm38) W1005L probably damaging Het
Ehmt1 T C 2: 24,805,138 (GRCm38) M989V probably benign Het
Gm17660 T A 5: 104,074,233 (GRCm38) probably benign Het
Gm5422 G A 10: 31,248,462 (GRCm38) noncoding transcript Het
Gm9944 A G 4: 144,453,263 (GRCm38) probably benign Het
Gtf2ird2 T C 5: 134,216,987 (GRCm38) Y696H probably damaging Het
H2-M11 T G 17: 36,548,766 (GRCm38) V217G probably damaging Het
Hrasls A G 16: 29,228,226 (GRCm38) K166E probably damaging Het
Hunk C T 16: 90,386,407 (GRCm38) probably benign Het
Impg1 T C 9: 80,378,517 (GRCm38) probably null Het
Ints11 T G 4: 155,875,198 (GRCm38) D87E probably benign Het
Intu T A 3: 40,540,924 (GRCm38) S21T probably benign Het
Intu C A 3: 40,683,501 (GRCm38) D472E possibly damaging Het
Kbtbd3 T A 9: 4,316,985 (GRCm38) N45K probably benign Het
Kif1c C T 11: 70,728,397 (GRCm38) L953F probably damaging Het
Klrg2 C G 6: 38,636,794 (GRCm38) E91D possibly damaging Het
Lamc3 T C 2: 31,912,129 (GRCm38) probably null Het
Magi2 T G 5: 20,215,493 (GRCm38) M309R probably damaging Het
Magohb G A 6: 131,284,637 (GRCm38) P147S probably damaging Het
Mdn1 A G 4: 32,693,504 (GRCm38) D1043G probably damaging Het
Mtmr3 T C 11: 4,504,095 (GRCm38) D203G probably damaging Het
Mvp C T 7: 127,001,572 (GRCm38) V86I probably benign Het
Naip5 A T 13: 100,242,855 (GRCm38) F226I probably damaging Het
Nasp T A 4: 116,618,936 (GRCm38) Q51L probably damaging Het
Nf1 T A 11: 79,535,604 (GRCm38) F1594I probably damaging Het
Nod2 A C 8: 88,670,476 (GRCm38) E816A possibly damaging Het
Nom1 G A 5: 29,435,318 (GRCm38) S214N probably damaging Het
Olfr168 T C 16: 19,530,177 (GRCm38) T248A probably benign Het
Olfr25 T A 9: 38,329,901 (GRCm38) F105I probably damaging Het
Parp14 A C 16: 35,857,849 (GRCm38) L583R probably damaging Het
Pclo T C 5: 14,713,224 (GRCm38) S3904P unknown Het
Pkhd1 T A 1: 20,550,840 (GRCm38) probably benign Het
Polr1e A C 4: 45,027,469 (GRCm38) D233A probably damaging Het
Prr29 T C 11: 106,376,683 (GRCm38) V124A probably damaging Het
Rasgrp1 A T 2: 117,298,547 (GRCm38) V197E probably damaging Het
Rgma A T 7: 73,417,959 (GRCm38) T415S unknown Het
Sacs G T 14: 61,209,762 (GRCm38) V3086L probably benign Het
Sash1 A G 10: 8,730,377 (GRCm38) S750P probably benign Het
Sdccag3 T A 2: 26,387,606 (GRCm38) N69Y probably damaging Het
Sema6a A T 18: 47,283,445 (GRCm38) S372T probably benign Het
Sis A G 3: 72,909,087 (GRCm38) probably benign Het
Skint8 T A 4: 111,939,572 (GRCm38) V291D probably damaging Het
Slc12a8 A G 16: 33,551,007 (GRCm38) N171S probably damaging Het
Slc25a40 G A 5: 8,440,793 (GRCm38) probably null Het
Spag6l A T 16: 16,780,628 (GRCm38) I333N probably benign Het
Sspo T A 6: 48,477,877 (GRCm38) F2999L probably damaging Het
Stambpl1 A C 19: 34,238,821 (GRCm38) T363P probably damaging Het
Tenm4 A T 7: 96,888,685 (GRCm38) N1785Y probably damaging Het
Tln2 C T 9: 67,375,807 (GRCm38) S293N probably benign Het
Tmed3 G A 9: 89,702,780 (GRCm38) L141F probably damaging Het
Tmem30c G T 16: 57,266,480 (GRCm38) T320K possibly damaging Het
Tnn T C 1: 160,145,144 (GRCm38) Y296C probably damaging Het
Ttn C T 2: 76,790,086 (GRCm38) A15802T probably damaging Het
Usp53 T C 3: 122,947,400 (GRCm38) M734V probably benign Het
Vmn1r24 A G 6: 57,956,512 (GRCm38) I7T probably benign Het
Vmn1r74 T A 7: 11,847,577 (GRCm38) V268E probably damaging Het
Xirp1 A T 9: 120,018,775 (GRCm38) H347Q possibly damaging Het
Other mutations in Cc2d2a
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00392:Cc2d2a APN 5 43,724,380 (GRCm38) splice site probably benign
IGL00937:Cc2d2a APN 5 43,688,122 (GRCm38) critical splice acceptor site probably null
IGL01322:Cc2d2a APN 5 43,689,003 (GRCm38) missense probably benign 0.00
IGL01349:Cc2d2a APN 5 43,723,784 (GRCm38) missense probably benign 0.01
IGL01448:Cc2d2a APN 5 43,684,185 (GRCm38) missense possibly damaging 0.65
IGL01871:Cc2d2a APN 5 43,688,969 (GRCm38) missense probably damaging 0.98
IGL01947:Cc2d2a APN 5 43,688,237 (GRCm38) missense probably damaging 0.96
IGL01976:Cc2d2a APN 5 43,683,115 (GRCm38) missense probably benign 0.02
IGL02113:Cc2d2a APN 5 43,685,248 (GRCm38) splice site probably null
IGL02364:Cc2d2a APN 5 43,735,450 (GRCm38) missense probably damaging 1.00
IGL02448:Cc2d2a APN 5 43,683,205 (GRCm38) splice site probably benign
IGL02458:Cc2d2a APN 5 43,718,554 (GRCm38) missense probably benign 0.01
IGL02542:Cc2d2a APN 5 43,688,910 (GRCm38) splice site probably benign
IGL02834:Cc2d2a APN 5 43,714,521 (GRCm38) nonsense probably null
IGL02940:Cc2d2a APN 5 43,728,294 (GRCm38) splice site probably null
IGL03003:Cc2d2a APN 5 43,671,266 (GRCm38) missense probably benign 0.22
IGL03183:Cc2d2a APN 5 43,732,379 (GRCm38) missense probably damaging 1.00
C9142:Cc2d2a UTSW 5 43,735,457 (GRCm38) splice site probably benign
P0028:Cc2d2a UTSW 5 43,684,199 (GRCm38) missense probably benign
R0193:Cc2d2a UTSW 5 43,736,118 (GRCm38) missense probably damaging 1.00
R0201:Cc2d2a UTSW 5 43,737,512 (GRCm38) missense probably damaging 1.00
R0211:Cc2d2a UTSW 5 43,688,266 (GRCm38) splice site probably null
R0243:Cc2d2a UTSW 5 43,696,638 (GRCm38) splice site probably benign
R0317:Cc2d2a UTSW 5 43,706,901 (GRCm38) critical splice donor site probably null
R0453:Cc2d2a UTSW 5 43,703,294 (GRCm38) missense probably benign 0.00
R0558:Cc2d2a UTSW 5 43,724,387 (GRCm38) splice site probably benign
R0624:Cc2d2a UTSW 5 43,730,029 (GRCm38) missense probably benign
R0634:Cc2d2a UTSW 5 43,681,381 (GRCm38) splice site probably benign
R1503:Cc2d2a UTSW 5 43,695,239 (GRCm38) missense probably damaging 1.00
R1635:Cc2d2a UTSW 5 43,722,470 (GRCm38) missense probably damaging 1.00
R1686:Cc2d2a UTSW 5 43,739,371 (GRCm38) missense possibly damaging 0.81
R1715:Cc2d2a UTSW 5 43,718,661 (GRCm38) missense probably damaging 0.97
R1765:Cc2d2a UTSW 5 43,714,531 (GRCm38) missense probably damaging 0.99
R1794:Cc2d2a UTSW 5 43,688,252 (GRCm38) missense probably damaging 1.00
R1881:Cc2d2a UTSW 5 43,740,828 (GRCm38) missense probably damaging 0.99
R1917:Cc2d2a UTSW 5 43,706,222 (GRCm38) missense probably damaging 1.00
R2005:Cc2d2a UTSW 5 43,726,373 (GRCm38) critical splice donor site probably null
R2201:Cc2d2a UTSW 5 43,684,033 (GRCm38) splice site probably benign
R2244:Cc2d2a UTSW 5 43,732,433 (GRCm38) missense probably damaging 1.00
R2368:Cc2d2a UTSW 5 43,703,888 (GRCm38) missense probably benign
R2442:Cc2d2a UTSW 5 43,671,305 (GRCm38) critical splice donor site probably null
R2511:Cc2d2a UTSW 5 43,735,395 (GRCm38) missense probably damaging 0.99
R3023:Cc2d2a UTSW 5 43,685,251 (GRCm38) splice site probably null
R3147:Cc2d2a UTSW 5 43,709,155 (GRCm38) missense probably damaging 1.00
R3148:Cc2d2a UTSW 5 43,709,155 (GRCm38) missense probably damaging 1.00
R3426:Cc2d2a UTSW 5 43,736,109 (GRCm38) missense probably benign 0.00
R3609:Cc2d2a UTSW 5 43,712,326 (GRCm38) missense probably damaging 0.99
R3610:Cc2d2a UTSW 5 43,712,326 (GRCm38) missense probably damaging 0.99
R3611:Cc2d2a UTSW 5 43,712,326 (GRCm38) missense probably damaging 0.99
R3839:Cc2d2a UTSW 5 43,718,714 (GRCm38) missense probably benign
R3870:Cc2d2a UTSW 5 43,718,691 (GRCm38) nonsense probably null
R4334:Cc2d2a UTSW 5 43,683,134 (GRCm38) missense probably benign 0.00
R4913:Cc2d2a UTSW 5 43,739,323 (GRCm38) missense probably benign 0.12
R5179:Cc2d2a UTSW 5 43,688,221 (GRCm38) missense possibly damaging 0.82
R5315:Cc2d2a UTSW 5 43,720,433 (GRCm38) missense probably damaging 0.99
R5352:Cc2d2a UTSW 5 43,706,213 (GRCm38) missense probably damaging 1.00
R5386:Cc2d2a UTSW 5 43,730,041 (GRCm38) missense probably benign 0.01
R5538:Cc2d2a UTSW 5 43,695,176 (GRCm38) missense possibly damaging 0.94
R5568:Cc2d2a UTSW 5 43,709,091 (GRCm38) missense probably damaging 0.99
R5618:Cc2d2a UTSW 5 43,729,907 (GRCm38) missense probably benign 0.00
R5653:Cc2d2a UTSW 5 43,722,462 (GRCm38) missense possibly damaging 0.81
R5817:Cc2d2a UTSW 5 43,712,418 (GRCm38) missense probably damaging 1.00
R5858:Cc2d2a UTSW 5 43,715,775 (GRCm38) missense probably damaging 1.00
R5905:Cc2d2a UTSW 5 43,712,426 (GRCm38) missense probably benign
R5912:Cc2d2a UTSW 5 43,720,430 (GRCm38) missense probably damaging 0.97
R6073:Cc2d2a UTSW 5 43,729,975 (GRCm38) missense probably damaging 1.00
R6084:Cc2d2a UTSW 5 43,668,673 (GRCm38) missense probably benign
R6142:Cc2d2a UTSW 5 43,703,198 (GRCm38) missense probably damaging 0.97
R6176:Cc2d2a UTSW 5 43,709,113 (GRCm38) missense probably benign 0.32
R6238:Cc2d2a UTSW 5 43,671,235 (GRCm38) missense probably benign 0.11
R6381:Cc2d2a UTSW 5 43,715,776 (GRCm38) missense possibly damaging 0.69
R6404:Cc2d2a UTSW 5 43,704,074 (GRCm38) missense possibly damaging 0.58
R6455:Cc2d2a UTSW 5 43,739,412 (GRCm38) missense possibly damaging 0.69
R6695:Cc2d2a UTSW 5 43,718,677 (GRCm38) missense probably damaging 0.99
R6805:Cc2d2a UTSW 5 43,681,331 (GRCm38) missense probably damaging 1.00
R6919:Cc2d2a UTSW 5 43,703,215 (GRCm38) missense probably benign 0.19
R6970:Cc2d2a UTSW 5 43,718,585 (GRCm38) missense probably damaging 1.00
R7024:Cc2d2a UTSW 5 43,733,929 (GRCm38) missense probably benign 0.10
R7054:Cc2d2a UTSW 5 43,699,979 (GRCm38) nonsense probably null
R7071:Cc2d2a UTSW 5 43,709,113 (GRCm38) missense probably benign 0.13
R7098:Cc2d2a UTSW 5 43,683,139 (GRCm38) missense probably benign 0.00
R7366:Cc2d2a UTSW 5 43,729,990 (GRCm38) missense probably damaging 1.00
R7908:Cc2d2a UTSW 5 43,706,846 (GRCm38) missense probably benign 0.00
R7920:Cc2d2a UTSW 5 43,739,309 (GRCm38) missense probably benign 0.09
R7950:Cc2d2a UTSW 5 43,695,296 (GRCm38) critical splice donor site probably null
R8007:Cc2d2a UTSW 5 43,706,100 (GRCm38) missense possibly damaging 0.71
R8117:Cc2d2a UTSW 5 43,712,439 (GRCm38) missense probably damaging 1.00
R8123:Cc2d2a UTSW 5 43,710,554 (GRCm38) missense probably benign
R8179:Cc2d2a UTSW 5 43,699,953 (GRCm38) missense probably damaging 0.96
R8279:Cc2d2a UTSW 5 43,736,145 (GRCm38) missense probably benign 0.01
R8293:Cc2d2a UTSW 5 43,688,228 (GRCm38) missense probably damaging 0.97
R8480:Cc2d2a UTSW 5 43,685,144 (GRCm38) splice site probably null
R8482:Cc2d2a UTSW 5 43,695,239 (GRCm38) missense probably damaging 1.00
R8731:Cc2d2a UTSW 5 43,735,446 (GRCm38) missense probably damaging 1.00
R8780:Cc2d2a UTSW 5 43,739,350 (GRCm38) missense probably damaging 1.00
R8784:Cc2d2a UTSW 5 43,703,303 (GRCm38) missense possibly damaging 0.90
R8871:Cc2d2a UTSW 5 43,699,943 (GRCm38) missense possibly damaging 0.71
R8972:Cc2d2a UTSW 5 43,710,542 (GRCm38) missense probably benign
R9122:Cc2d2a UTSW 5 43,673,739 (GRCm38) missense probably null 0.07
R9125:Cc2d2a UTSW 5 43,703,221 (GRCm38) missense probably benign
R9203:Cc2d2a UTSW 5 43,733,837 (GRCm38) missense probably benign 0.01
R9310:Cc2d2a UTSW 5 43,695,146 (GRCm38) missense probably damaging 1.00
R9343:Cc2d2a UTSW 5 43,718,657 (GRCm38) missense probably damaging 1.00
R9353:Cc2d2a UTSW 5 43,703,349 (GRCm38) critical splice donor site probably null
Z1177:Cc2d2a UTSW 5 43,703,204 (GRCm38) missense probably benign
Predicted Primers
Posted On 2014-05-14