Incidental Mutation 'R1715:Rpgrip1'
| ID |
190961 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Rpgrip1
|
| Ensembl Gene |
ENSMUSG00000057132 |
| Gene Name |
retinitis pigmentosa GTPase regulator interacting protein 1 |
| Synonyms |
A930002K18Rik, 4930505G06Rik, 4930401L23Rik, nmf247 |
| MMRRC Submission |
039748-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.311)
|
| Stock # |
R1715 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
14 |
| Chromosomal Location |
52110704-52163546 bp(+) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 52140691 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Cysteine to Serine
at position 499
(C499S)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000138027
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000111600]
[ENSMUST00000111603]
[ENSMUST00000180646]
[ENSMUST00000181401]
|
| AlphaFold |
Q9EPQ2 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000111600
AA Change: C499S
PolyPhen 2
Score 0.533 (Sensitivity: 0.88; Specificity: 0.90)
|
| SMART Domains |
Protein: ENSMUSP00000107227
Gene: ENSMUSG00000057132
AA Change: C499S
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
98 |
119 |
N/A |
INTRINSIC |
|
coiled coil region
|
248 |
348 |
N/A |
INTRINSIC |
|
coiled coil region
|
499 |
542 |
N/A |
INTRINSIC |
|
C2
|
602 |
707 |
1.08e-2 |
SMART |
|
coiled coil region
|
746 |
795 |
N/A |
INTRINSIC |
|
Blast:C2
|
958 |
1086 |
1e-37 |
BLAST |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000111603
AA Change: C499S
PolyPhen 2
Score 0.533 (Sensitivity: 0.88; Specificity: 0.90)
|
| SMART Domains |
Protein: ENSMUSP00000107230
Gene: ENSMUSG00000057132
AA Change: C499S
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
98 |
119 |
N/A |
INTRINSIC |
|
coiled coil region
|
248 |
348 |
N/A |
INTRINSIC |
|
coiled coil region
|
499 |
543 |
N/A |
INTRINSIC |
|
Pfam:C2-C2_1
|
582 |
721 |
1.9e-49 |
PFAM |
|
C2
|
764 |
869 |
7.3e-5 |
SMART |
|
coiled coil region
|
910 |
999 |
N/A |
INTRINSIC |
|
Blast:C2
|
1162 |
1290 |
2e-37 |
BLAST |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000180513
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000180646
|
| SMART Domains |
Protein: ENSMUSP00000137751
Gene: ENSMUSG00000057132
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
98 |
119 |
N/A |
INTRINSIC |
|
coiled coil region
|
248 |
276 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000180901
|
| SMART Domains |
Protein: ENSMUSP00000137826
Gene: ENSMUSG00000057132
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
179 |
223 |
N/A |
INTRINSIC |
|
coiled coil region
|
274 |
363 |
N/A |
INTRINSIC |
|
Blast:C2
|
526 |
654 |
2e-38 |
BLAST |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000181297
|
| SMART Domains |
Protein: ENSMUSP00000137653
Gene: ENSMUSG00000057132
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
180 |
224 |
N/A |
INTRINSIC |
|
low complexity region
|
257 |
284 |
N/A |
INTRINSIC |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000181401
AA Change: C499S
PolyPhen 2
Score 0.533 (Sensitivity: 0.88; Specificity: 0.90)
|
| SMART Domains |
Protein: ENSMUSP00000138027
Gene: ENSMUSG00000057132
AA Change: C499S
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
98 |
119 |
N/A |
INTRINSIC |
|
coiled coil region
|
248 |
348 |
N/A |
INTRINSIC |
|
coiled coil region
|
499 |
547 |
N/A |
INTRINSIC |
|
Pfam:DUF3250
|
605 |
710 |
2.8e-46 |
PFAM |
|
C2
|
753 |
858 |
1.08e-2 |
SMART |
|
coiled coil region
|
899 |
988 |
N/A |
INTRINSIC |
|
Blast:C2
|
1151 |
1279 |
1e-37 |
BLAST |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000181627
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000181709
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000181823
|
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.5%
- 10x: 96.8%
- 20x: 94.1%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a photoreceptor protein that interacts with retinitis pigmentosa GTPase regulator protein and is a key component of cone and rod photoreceptor cells. Mutations in this gene lead to autosomal recessive congenital blindness. [provided by RefSeq, Oct 2008]
PHENOTYPE: Homozygous mutation of this gene results in photoreceptor cell dysmorphology. By 3 months of age mutant animals show near complete loss of photoreceptor cells. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 57 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 1700023F06Rik |
T |
C |
11: 103,199,824 (GRCm38) |
|
probably null |
Het |
| 2210010C04Rik |
A |
G |
6: 41,032,936 (GRCm38) |
|
probably null |
Het |
| 2410089E03Rik |
T |
A |
15: 8,226,900 (GRCm38) |
|
probably null |
Het |
| Abca8a |
G |
A |
11: 110,091,580 (GRCm38) |
T12M |
probably damaging |
Het |
| Alms1 |
T |
A |
6: 85,629,052 (GRCm38) |
Y2561* |
probably null |
Het |
| Atp10a |
G |
A |
7: 58,786,505 (GRCm38) |
V348I |
probably damaging |
Het |
| Best2 |
T |
C |
8: 85,011,223 (GRCm38) |
Y181C |
probably benign |
Het |
| Btaf1 |
T |
A |
19: 36,969,121 (GRCm38) |
D442E |
probably damaging |
Het |
| C330027C09Rik |
C |
T |
16: 49,005,719 (GRCm38) |
T383I |
probably benign |
Het |
| Carmil3 |
T |
G |
14: 55,504,532 (GRCm38) |
V1153G |
probably benign |
Het |
| Cc2d2a |
A |
G |
5: 43,718,661 (GRCm38) |
I993M |
probably damaging |
Het |
| Ccng1 |
G |
A |
11: 40,752,114 (GRCm38) |
P169S |
probably benign |
Het |
| Cmtr2 |
T |
C |
8: 110,222,798 (GRCm38) |
L580P |
probably damaging |
Het |
| Col22a1 |
T |
C |
15: 72,006,981 (GRCm38) |
E109G |
possibly damaging |
Het |
| Crispld2 |
G |
T |
8: 120,023,649 (GRCm38) |
W264L |
possibly damaging |
Het |
| Cyp2c38 |
T |
C |
19: 39,404,795 (GRCm38) |
H276R |
probably benign |
Het |
| Dag1 |
A |
T |
9: 108,208,715 (GRCm38) |
V409E |
possibly damaging |
Het |
| Emc8 |
T |
C |
8: 120,658,555 (GRCm38) |
N146S |
probably benign |
Het |
| Glt8d1 |
T |
C |
14: 31,011,521 (GRCm38) |
V321A |
possibly damaging |
Het |
| Gm5174 |
C |
T |
10: 86,656,912 (GRCm38) |
|
noncoding transcript |
Het |
| Hdac10 |
G |
T |
15: 89,126,709 (GRCm38) |
|
probably null |
Het |
| Hectd4 |
A |
G |
5: 121,344,818 (GRCm38) |
D3144G |
possibly damaging |
Het |
| Ifna11 |
C |
T |
4: 88,820,236 (GRCm38) |
S93L |
probably damaging |
Het |
| Il16 |
T |
C |
7: 83,648,728 (GRCm38) |
N431S |
probably benign |
Het |
| Irf8 |
A |
T |
8: 120,754,388 (GRCm38) |
E237V |
probably damaging |
Het |
| Lrp1b |
A |
G |
2: 41,185,981 (GRCm38) |
Y1769H |
probably damaging |
Het |
| Lrrc9 |
A |
G |
12: 72,477,299 (GRCm38) |
N761D |
probably damaging |
Het |
| Mbtps1 |
T |
C |
8: 119,542,730 (GRCm38) |
Y207C |
probably benign |
Het |
| Myo9a |
A |
G |
9: 59,832,300 (GRCm38) |
E765G |
probably damaging |
Het |
| Nlrp3 |
A |
G |
11: 59,543,351 (GRCm38) |
D80G |
probably damaging |
Het |
| Olfr361 |
G |
A |
2: 37,085,176 (GRCm38) |
P191S |
probably damaging |
Het |
| Olfr697 |
G |
C |
7: 106,741,548 (GRCm38) |
P129A |
probably damaging |
Het |
| Olfr830 |
A |
T |
9: 18,875,794 (GRCm38) |
I156F |
probably benign |
Het |
| Pcyt2 |
T |
A |
11: 120,615,851 (GRCm38) |
|
probably null |
Het |
| Plxnd1 |
T |
C |
6: 115,968,681 (GRCm38) |
T944A |
probably benign |
Het |
| Psd4 |
A |
T |
2: 24,405,332 (GRCm38) |
I833F |
probably damaging |
Het |
| Psmd7 |
A |
G |
8: 107,581,185 (GRCm38) |
I222T |
probably benign |
Het |
| Rap2b |
A |
G |
3: 61,365,190 (GRCm38) |
E45G |
probably damaging |
Het |
| Rbm22 |
T |
C |
18: 60,560,844 (GRCm38) |
S7P |
possibly damaging |
Het |
| Rbpms2 |
ACTGCTGCTGCTGCTGC |
ACTGCTGCTGCTGCTGCTGC |
9: 65,651,666 (GRCm38) |
|
probably benign |
Het |
| Rfx4 |
A |
G |
10: 84,844,280 (GRCm38) |
N107S |
probably damaging |
Het |
| Ripk2 |
T |
A |
4: 16,155,192 (GRCm38) |
|
probably null |
Het |
| Scarf1 |
T |
C |
11: 75,524,044 (GRCm38) |
S515P |
probably damaging |
Het |
| Sgip1 |
T |
C |
4: 102,915,059 (GRCm38) |
V215A |
probably benign |
Het |
| Sis |
T |
C |
3: 72,889,010 (GRCm38) |
I1813V |
possibly damaging |
Het |
| Slc17a3 |
A |
T |
13: 23,856,741 (GRCm38) |
T317S |
probably benign |
Het |
| Slc35e1 |
T |
C |
8: 72,483,977 (GRCm38) |
N340S |
probably benign |
Het |
| Smg6 |
A |
G |
11: 74,929,430 (GRCm38) |
I176V |
probably benign |
Het |
| Smim17 |
T |
C |
7: 6,429,326 (GRCm38) |
L89S |
probably damaging |
Het |
| Synm |
T |
C |
7: 67,736,303 (GRCm38) |
N95S |
probably damaging |
Het |
| Tdrd9 |
A |
G |
12: 112,036,439 (GRCm38) |
K841E |
possibly damaging |
Het |
| Tep1 |
G |
T |
14: 50,854,567 (GRCm38) |
F570L |
possibly damaging |
Het |
| Tgm3 |
G |
A |
2: 130,026,814 (GRCm38) |
|
probably null |
Het |
| Tra2b |
T |
C |
16: 22,252,746 (GRCm38) |
Y128C |
possibly damaging |
Het |
| Vmn2r17 |
T |
C |
5: 109,428,244 (GRCm38) |
V327A |
probably benign |
Het |
| Wdr20rt |
A |
T |
12: 65,227,314 (GRCm38) |
D344V |
probably damaging |
Het |
| Zfp940 |
A |
G |
7: 29,844,938 (GRCm38) |
C515R |
probably damaging |
Het |
|
| Other mutations in Rpgrip1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00333:Rpgrip1
|
APN |
14 |
52,150,438 (GRCm38) |
splice site |
probably null |
|
|
IGL01016:Rpgrip1
|
APN |
14 |
52,145,836 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL01019:Rpgrip1
|
APN |
14 |
52,131,176 (GRCm38) |
missense |
possibly damaging |
0.70 |
|
IGL01382:Rpgrip1
|
APN |
14 |
52,145,477 (GRCm38) |
missense |
possibly damaging |
0.93 |
|
IGL01433:Rpgrip1
|
APN |
14 |
52,126,377 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL01528:Rpgrip1
|
APN |
14 |
52,112,177 (GRCm38) |
nonsense |
probably null |
|
|
IGL01548:Rpgrip1
|
APN |
14 |
52,126,271 (GRCm38) |
splice site |
probably benign |
|
|
IGL01652:Rpgrip1
|
APN |
14 |
52,145,492 (GRCm38) |
unclassified |
probably benign |
|
|
IGL02040:Rpgrip1
|
APN |
14 |
52,121,019 (GRCm38) |
missense |
possibly damaging |
0.86 |
|
IGL02113:Rpgrip1
|
APN |
14 |
52,133,844 (GRCm38) |
missense |
possibly damaging |
0.85 |
|
IGL02121:Rpgrip1
|
APN |
14 |
52,147,374 (GRCm38) |
missense |
possibly damaging |
0.89 |
|
IGL02185:Rpgrip1
|
APN |
14 |
52,112,228 (GRCm38) |
missense |
possibly damaging |
0.72 |
|
IGL02234:Rpgrip1
|
APN |
14 |
52,131,309 (GRCm38) |
splice site |
probably benign |
|
|
IGL02322:Rpgrip1
|
APN |
14 |
52,150,042 (GRCm38) |
missense |
possibly damaging |
0.89 |
|
IGL02379:Rpgrip1
|
APN |
14 |
52,138,888 (GRCm38) |
missense |
possibly damaging |
0.53 |
|
IGL02524:Rpgrip1
|
APN |
14 |
52,121,054 (GRCm38) |
missense |
probably benign |
0.01 |
|
IGL02836:Rpgrip1
|
APN |
14 |
52,145,257 (GRCm38) |
splice site |
probably null |
|
|
IGL03264:Rpgrip1
|
APN |
14 |
52,140,652 (GRCm38) |
missense |
possibly damaging |
0.53 |
|
IGL03410:Rpgrip1
|
APN |
14 |
52,158,366 (GRCm38) |
unclassified |
probably benign |
|
|
FR4976:Rpgrip1
|
UTSW |
14 |
52,149,544 (GRCm38) |
utr 3 prime |
probably benign |
|
|
FR4976:Rpgrip1
|
UTSW |
14 |
52,149,394 (GRCm38) |
utr 3 prime |
probably benign |
|
|
R0045:Rpgrip1
|
UTSW |
14 |
52,141,144 (GRCm38) |
missense |
possibly damaging |
0.53 |
|
R0045:Rpgrip1
|
UTSW |
14 |
52,141,144 (GRCm38) |
missense |
possibly damaging |
0.53 |
|
R0089:Rpgrip1
|
UTSW |
14 |
52,149,384 (GRCm38) |
utr 3 prime |
probably benign |
|
|
R0498:Rpgrip1
|
UTSW |
14 |
52,131,314 (GRCm38) |
splice site |
probably benign |
|
|
R0602:Rpgrip1
|
UTSW |
14 |
52,133,856 (GRCm38) |
missense |
possibly damaging |
0.72 |
|
R0776:Rpgrip1
|
UTSW |
14 |
52,141,169 (GRCm38) |
missense |
possibly damaging |
0.85 |
|
R1139:Rpgrip1
|
UTSW |
14 |
52,147,221 (GRCm38) |
missense |
probably benign |
0.33 |
|
R1528:Rpgrip1
|
UTSW |
14 |
52,112,224 (GRCm38) |
missense |
probably benign |
0.01 |
|
R1934:Rpgrip1
|
UTSW |
14 |
52,114,644 (GRCm38) |
missense |
possibly damaging |
0.53 |
|
R2087:Rpgrip1
|
UTSW |
14 |
52,136,622 (GRCm38) |
splice site |
probably null |
|
|
R2114:Rpgrip1
|
UTSW |
14 |
52,149,567 (GRCm38) |
missense |
probably benign |
0.27 |
|
R3406:Rpgrip1
|
UTSW |
14 |
52,145,209 (GRCm38) |
missense |
possibly damaging |
0.92 |
|
R3835:Rpgrip1
|
UTSW |
14 |
52,147,253 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4084:Rpgrip1
|
UTSW |
14 |
52,149,351 (GRCm38) |
missense |
possibly damaging |
0.72 |
|
R4124:Rpgrip1
|
UTSW |
14 |
52,152,324 (GRCm38) |
splice site |
probably null |
|
|
R4381:Rpgrip1
|
UTSW |
14 |
52,150,449 (GRCm38) |
missense |
possibly damaging |
0.54 |
|
R4407:Rpgrip1
|
UTSW |
14 |
52,147,399 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4520:Rpgrip1
|
UTSW |
14 |
52,152,289 (GRCm38) |
missense |
probably benign |
0.08 |
|
R4904:Rpgrip1
|
UTSW |
14 |
52,121,087 (GRCm38) |
missense |
possibly damaging |
0.86 |
|
R4904:Rpgrip1
|
UTSW |
14 |
52,160,129 (GRCm38) |
missense |
probably damaging |
0.97 |
|
R5284:Rpgrip1
|
UTSW |
14 |
52,149,276 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5342:Rpgrip1
|
UTSW |
14 |
52,145,209 (GRCm38) |
missense |
possibly damaging |
0.92 |
|
R5377:Rpgrip1
|
UTSW |
14 |
52,160,195 (GRCm38) |
missense |
possibly damaging |
0.96 |
|
R5499:Rpgrip1
|
UTSW |
14 |
52,140,585 (GRCm38) |
missense |
probably benign |
0.00 |
|
R5729:Rpgrip1
|
UTSW |
14 |
52,160,160 (GRCm38) |
missense |
probably benign |
0.28 |
|
R5834:Rpgrip1
|
UTSW |
14 |
52,158,382 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R6157:Rpgrip1
|
UTSW |
14 |
52,112,174 (GRCm38) |
missense |
probably benign |
0.00 |
|
R6455:Rpgrip1
|
UTSW |
14 |
52,141,189 (GRCm38) |
missense |
probably damaging |
0.97 |
|
R6796:Rpgrip1
|
UTSW |
14 |
52,150,012 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7065:Rpgrip1
|
UTSW |
14 |
52,141,193 (GRCm38) |
missense |
possibly damaging |
0.96 |
|
R7173:Rpgrip1
|
UTSW |
14 |
52,112,176 (GRCm38) |
missense |
possibly damaging |
0.59 |
|
R7302:Rpgrip1
|
UTSW |
14 |
52,149,555 (GRCm38) |
missense |
unknown |
|
|
R7315:Rpgrip1
|
UTSW |
14 |
52,121,001 (GRCm38) |
missense |
not run |
|
|
R7320:Rpgrip1
|
UTSW |
14 |
52,131,216 (GRCm38) |
missense |
possibly damaging |
0.53 |
|
R7344:Rpgrip1
|
UTSW |
14 |
52,140,659 (GRCm38) |
missense |
probably damaging |
0.98 |
|
R7459:Rpgrip1
|
UTSW |
14 |
52,140,559 (GRCm38) |
missense |
probably benign |
0.18 |
|
R7797:Rpgrip1
|
UTSW |
14 |
52,133,820 (GRCm38) |
missense |
possibly damaging |
0.53 |
|
R7852:Rpgrip1
|
UTSW |
14 |
52,145,880 (GRCm38) |
missense |
probably benign |
0.01 |
|
R7916:Rpgrip1
|
UTSW |
14 |
52,131,184 (GRCm38) |
missense |
possibly damaging |
0.53 |
|
R7990:Rpgrip1
|
UTSW |
14 |
52,129,518 (GRCm38) |
missense |
possibly damaging |
0.53 |
|
R8041:Rpgrip1
|
UTSW |
14 |
52,119,245 (GRCm38) |
missense |
possibly damaging |
0.53 |
|
R8344:Rpgrip1
|
UTSW |
14 |
52,150,362 (GRCm38) |
missense |
possibly damaging |
0.62 |
|
R8403:Rpgrip1
|
UTSW |
14 |
52,152,201 (GRCm38) |
critical splice acceptor site |
probably null |
|
|
R8559:Rpgrip1
|
UTSW |
14 |
52,149,257 (GRCm38) |
missense |
unknown |
|
|
R8679:Rpgrip1
|
UTSW |
14 |
52,159,395 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8817:Rpgrip1
|
UTSW |
14 |
52,140,599 (GRCm38) |
missense |
probably benign |
0.33 |
|
R8890:Rpgrip1
|
UTSW |
14 |
52,145,044 (GRCm38) |
missense |
possibly damaging |
0.85 |
|
R9197:Rpgrip1
|
UTSW |
14 |
52,145,400 (GRCm38) |
missense |
possibly damaging |
0.51 |
|
RF028:Rpgrip1
|
UTSW |
14 |
52,149,398 (GRCm38) |
nonsense |
probably null |
|
|
RF034:Rpgrip1
|
UTSW |
14 |
52,149,526 (GRCm38) |
utr 3 prime |
probably benign |
|
|
RF035:Rpgrip1
|
UTSW |
14 |
52,149,393 (GRCm38) |
utr 3 prime |
probably benign |
|
|
RF036:Rpgrip1
|
UTSW |
14 |
52,149,541 (GRCm38) |
frame shift |
probably null |
|
|
RF040:Rpgrip1
|
UTSW |
14 |
52,149,537 (GRCm38) |
frame shift |
probably null |
|
|
RF043:Rpgrip1
|
UTSW |
14 |
52,149,395 (GRCm38) |
utr 3 prime |
probably benign |
|
|
X0024:Rpgrip1
|
UTSW |
14 |
52,141,208 (GRCm38) |
missense |
possibly damaging |
0.85 |
|
X0026:Rpgrip1
|
UTSW |
14 |
52,147,221 (GRCm38) |
missense |
probably benign |
0.33 |
|
| Predicted Primers |
PCR Primer
(F):5'- GCGTTTTACAACTCTCACCAACCG -3'
(R):5'- GCTCAGGCTTTCTAAGACCCTTCAC -3'
Sequencing Primer
(F):5'- TCACCAACCGCTTTTACCAATG -3'
(R):5'- ACCCAGAAGTTTGGCACTTG -3'
|
| Posted On |
2014-05-14 |
Incidental Mutation