Mutagenetix > Incidental Mutation

Incidental Mutation 'R1718:Gm8909'

191234

Institutional Source

Beutler Lab

Gene Symbol

Gm8909

Ensembl Gene

ENSMUSG00000073402

Gene Name

predicted gene 8909

Synonyms

MMRRC Submission

039751-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.057) question?

Stock #

R1718 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

36164443-36168537 bp(-) (GRCm38)

Type of Mutation

unclassified

DNA Base Change (assembly)

A to G at 36161784 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000133663 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000040467] [ENSMUST00000097335] [ENSMUST00000173353]

AlphaFold

G3UXE9

Predicted Effect

probably benign
Transcript: ENSMUST00000040467

SMART Domains

Protein: ENSMUSP00000036092
Gene: ENSMUSG00000073402

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Pfam:MHC_I	26	204	5.9e-96	PFAM
IGc1	223	294	8.23e-23	SMART
transmembrane domain	310	332	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000056774

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000090537

SMART Domains

Protein: ENSMUSP00000088025
Gene: ENSMUSG00000038311

Domain	Start	End	E-Value	Type
SCOP:d2sqca2	105	173	2e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000097335

SMART Domains

Protein: ENSMUSP00000094947
Gene: ENSMUSG00000073402

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Pfam:MHC_I	54	232	7.3e-96	PFAM
IGc1	251	322	8.23e-23	SMART
transmembrane domain	338	360	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000173025

SMART Domains

Protein: ENSMUSP00000133655
Gene: ENSMUSG00000038311

Domain	Start	End	E-Value	Type
SCOP:d2sqca2	148	216	2e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000173353

SMART Domains

Protein: ENSMUSP00000133663
Gene: ENSMUSG00000073402

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Pfam:MHC_I	54	232	3.9e-93	PFAM
IGc1	251	322	8.23e-23	SMART
transmembrane domain	338	360	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000173625

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000174345

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000174693

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000174752

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.6%
20x: 93.5%

Validation Efficiency

100% (69/69)

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2210408I21Rik	G	T	13: 77,245,370		probably benign	Het
Acot3	T	G	12: 84,053,943		probably null	Het
Acox1	A	T	11: 116,174,682	C523*	probably null	Het
Adamts19	G	A	18: 58,972,825	C764Y	probably damaging	Het
Agrn	GCTCT	GCTCTCT	4: 156,166,519		probably null	Het
Apob	A	G	12: 8,016,087	K4319R	probably benign	Het
AU016765	A	C	17: 64,555,438		noncoding transcript	Het
Bpifb1	T	A	2: 154,213,983		probably null	Het
Btn2a2	A	G	13: 23,481,936	V242A	probably benign	Het
Camta1	A	G	4: 151,084,024	S1281P	probably benign	Het
Ccdc116	T	C	16: 17,141,908	K306E	probably benign	Het
Cemip	A	G	7: 83,935,658	V1350A	probably benign	Het
Clip2	A	T	5: 134,502,929	L674*	probably null	Het
Cyp2d12	T	A	15: 82,558,050	D244E	probably benign	Het
Cyp4x1	A	G	4: 115,111,670	V379A	possibly damaging	Het
Dnah9	T	A	11: 66,168,079	H130L	possibly damaging	Het
Enpp7	A	G	11: 118,990,983	Y318C	probably damaging	Het
Fras1	A	T	5: 96,554,889		probably null	Het
Glra3	G	T	8: 55,940,907	A18S	probably benign	Het
Gm28042	T	A	2: 120,036,391	S172T	possibly damaging	Het
Gm7808	T	A	9: 19,928,003		probably benign	Het
Gpr61	C	T	3: 108,150,380	V322M	possibly damaging	Het
Hapln3	A	G	7: 79,123,450	V15A	unknown	Het
Ip6k1	G	A	9: 108,040,996	E77K	possibly damaging	Het
Klk1b4	A	G	7: 44,209,672	Y38C	probably damaging	Het
Lrrfip1	A	G	1: 91,115,555	K561E	probably damaging	Het
Map3k1	A	G	13: 111,755,419	C1101R	probably benign	Het
Mcoln2	A	G	3: 146,190,474		probably benign	Het
Mfsd2b	G	A	12: 4,869,037	T73I	probably damaging	Het
Mfsd4b5	C	T	10: 39,975,203	V19I	probably benign	Het
Mgme1	T	A	2: 144,272,318	D113E	probably benign	Het
Mki67	A	G	7: 135,695,494	S2604P	probably damaging	Het
Mob3c	A	G	4: 115,831,644	I125V	probably benign	Het
Mrps9	G	A	1: 42,903,399	R339H	probably damaging	Het
Ndst1	T	C	18: 60,707,803	D269G	probably damaging	Het
Nedd9	T	C	13: 41,338,926	N30S	probably damaging	Het
Notch4	G	A	17: 34,576,763		probably benign	Het
Olfr1095	A	T	2: 86,851,187	N170K	probably benign	Het
Olfr250	A	G	9: 38,367,594	D6G	probably benign	Het
Olfr877	G	A	9: 37,855,453	V212I	probably benign	Het
Olfr995	T	C	2: 85,438,805	M118V	probably benign	Het
Papss1	C	A	3: 131,619,185	R447S	probably damaging	Het
Pla2g4a	C	T	1: 149,871,523		probably benign	Het
Rab11fip2	A	G	19: 59,935,649	F266L	probably damaging	Het
Ralgapb	T	A	2: 158,443,280	Y554*	probably null	Het
Rem2	T	C	14: 54,479,150	V240A	probably damaging	Het
Retsat	T	C	6: 72,602,671	V143A	probably benign	Het
Rnf141	G	T	7: 110,821,273	Q175K	probably damaging	Het
Rtcb	C	A	10: 85,942,017	G431V	probably damaging	Het
Slc7a6os	A	G	8: 106,204,339	W222R	probably damaging	Het
Smarcc2	T	C	10: 128,468,998		probably benign	Het
Smchd1	A	T	17: 71,448,833	Y218N	possibly damaging	Het
Sp110	G	A	1: 85,594,385	H66Y	probably benign	Het
Speg	G	A	1: 75,417,863	E1739K	probably benign	Het
Speg	A	G	1: 75,421,744	Q1945R	possibly damaging	Het
Sprtn	T	C	8: 124,898,357	V67A	probably damaging	Het
Tktl2	G	A	8: 66,512,347	V186M	probably damaging	Het
Tnks1bp1	G	T	2: 85,071,738	E997D	probably benign	Het
Tti1	A	T	2: 158,008,224	V365E	probably benign	Het
Tulp4	A	G	17: 6,222,440	I590V	probably benign	Het
Vmn2r61	A	G	7: 42,300,697	D847G	probably benign	Het
Zfp184	A	G	13: 21,959,272	T383A	possibly damaging	Het
Zik1	T	A	7: 10,492,341	E33V	probably damaging	Het
Zik1	C	A	7: 10,492,342	E33*	probably null	Het

Other mutations in Gm8909

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00157:Gm8909	APN	17	36165354	critical splice donor site	probably null
IGL00534:Gm8909	APN	17	36168129	missense	probably damaging	1.00
IGL02312:Gm8909	APN	17	36165407	missense	probably benign	0.01
IGL03346:Gm8909	APN	17	36168109	missense	probably damaging	1.00
H8441:Gm8909	UTSW	17	36167982	missense	possibly damaging	0.84
R0005:Gm8909	UTSW	17	36162192	unclassified	probably benign
R0078:Gm8909	UTSW	17	36165461	missense	possibly damaging	0.95
R0211:Gm8909	UTSW	17	36168007	missense	probably damaging	1.00
R0211:Gm8909	UTSW	17	36168007	missense	probably damaging	1.00
R0233:Gm8909	UTSW	17	36167469	missense	probably benign	0.42
R0233:Gm8909	UTSW	17	36167469	missense	probably benign	0.42
R0553:Gm8909	UTSW	17	36168057	missense	probably damaging	1.00
R0670:Gm8909	UTSW	17	36168098	missense	possibly damaging	0.74
R1937:Gm8909	UTSW	17	36168007	missense	probably damaging	1.00
R2571:Gm8909	UTSW	17	36167661	missense	possibly damaging	0.66
R4393:Gm8909	UTSW	17	36161969	unclassified	probably benign
R4396:Gm8909	UTSW	17	36161969	unclassified	probably benign
R4409:Gm8909	UTSW	17	36165850	missense	possibly damaging	0.53
R4505:Gm8909	UTSW	17	36161480	unclassified	probably benign
R4506:Gm8909	UTSW	17	36161480	unclassified	probably benign
R4507:Gm8909	UTSW	17	36161480	unclassified	probably benign
R4579:Gm8909	UTSW	17	36161757	unclassified	probably benign
R4684:Gm8909	UTSW	17	36165858	missense	possibly damaging	0.90
R4740:Gm8909	UTSW	17	36167556	missense	probably damaging	1.00
R5087:Gm8909	UTSW	17	36165416	nonsense	probably null
R5103:Gm8909	UTSW	17	36161685	unclassified	probably benign
R5275:Gm8909	UTSW	17	36161675	splice site	probably null
R5425:Gm8909	UTSW	17	36168485	missense	probably damaging	1.00
R6155:Gm8909	UTSW	17	36167507	missense	possibly damaging	0.93
R6727:Gm8909	UTSW	17	36165730	missense	probably damaging	1.00
R6852:Gm8909	UTSW	17	36168073	missense	possibly damaging	0.52
R7985:Gm8909	UTSW	17	36167553	missense	probably damaging	1.00
R8316:Gm8909	UTSW	17	36168262	missense	unknown
R8872:Gm8909	UTSW	17	36165401	missense	probably benign	0.00
R9046:Gm8909	UTSW	17	36165143	critical splice donor site	probably null
R9296:Gm8909	UTSW	17	36168277	missense	unknown
Z1177:Gm8909	UTSW	17	36165712	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CACTTGGAAACTCTTCTCATGGCCC -3'
(R):5'- TCCTGGCAGATCTCAGAACTCAGAC -3'

Sequencing Primer
(F):5'- TCATGGCCCTCTGCGAC -3'
(R):5'- CGAAAGCTGCTTCTGCTG -3'

Posted On

2014-05-14