Mutagenetix > Incidental Mutation

Incidental Mutation 'R1721:Vill'

191475

Institutional Source

Beutler Lab

Gene Symbol

Vill

Ensembl Gene

ENSMUSG00000038775

Gene Name

villin-like

Synonyms

Villp

MMRRC Submission

039753-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.073) question?

Stock #

R1721 (G1)

Quality Score

174

Status

Validated

Chromosome

Chromosomal Location

118881846-118900593 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 118895082 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Serine at position 100 (F100S)

Ref Sequence

ENSEMBL: ENSMUSP00000123393 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000051386] [ENSMUST00000074734] [ENSMUST00000126251] [ENSMUST00000136561] [ENSMUST00000141185]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000051386
AA Change: F492S

PolyPhen 2 Score 0.009 (Sensitivity: 0.96; Specificity: 0.77)

SMART Domains

Protein: ENSMUSP00000061731
Gene: ENSMUSG00000038775
AA Change: F492S

Domain	Start	End	E-Value	Type
GEL	14	114	4.59e-13	SMART
GEL	135	227	4.18e-16	SMART
GEL	252	348	8.35e-25	SMART
GEL	391	488	7.92e-17	SMART
GEL	508	594	4.38e-19	SMART
GEL	613	706	7.8e-16	SMART
VHP	824	859	2.12e-17	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000074734
AA Change: F492S

PolyPhen 2 Score 0.631 (Sensitivity: 0.87; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000074294
Gene: ENSMUSG00000038775
AA Change: F492S

Domain	Start	End	E-Value	Type
GEL	14	114	4.59e-13	SMART
GEL	135	227	4.18e-16	SMART
GEL	252	348	8.35e-25	SMART
GEL	391	488	7.92e-17	SMART
GEL	508	594	4.38e-19	SMART
VHP	740	775	2.12e-17	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000126251

SMART Domains

Protein: ENSMUSP00000116262
Gene: ENSMUSG00000038775

Domain	Start	End	E-Value	Type
Blast:GEL	1	56	9e-21	BLAST
GEL	63	149	4.38e-19	SMART
GEL	168	261	7.8e-16	SMART
VHP	357	392	2.12e-17	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000136561
AA Change: F100S

PolyPhen 2 Score 0.983 (Sensitivity: 0.75; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000123393
Gene: ENSMUSG00000038775
AA Change: F100S

Domain	Start	End	E-Value	Type
GEL	1	96	2.46e-13	SMART
Blast:GEL	116	140	2e-8	BLAST

Predicted Effect

possibly damaging
Transcript: ENSMUST00000141185
AA Change: F108S

PolyPhen 2 Score 0.927 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000116546
Gene: ENSMUSG00000038775
AA Change: F108S

Domain	Start	End	E-Value	Type
GEL	7	104	7.92e-17	SMART
GEL	124	210	4.38e-19	SMART
GEL	229	322	7.8e-16	SMART
VHP	440	475	2.12e-17	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000151638

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000153454

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000153630

Meta Mutation Damage Score

0.7542

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.8%
20x: 94.1%

Validation Efficiency

99% (87/88)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the villin/gelsolin family. It contains 6 gelsolin-like repeats and a headpiece domain. It may play a role in actin-bundling. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 83 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acin1	A	T	14: 54,901,995 (GRCm39)	V559E	probably benign	Het
Adamts20	A	G	15: 94,236,340 (GRCm39)	F844L	probably benign	Het
Adcy5	C	A	16: 35,118,794 (GRCm39)	D1048E	probably damaging	Het
Agrn	A	T	4: 156,259,630 (GRCm39)	C768*	probably null	Het
Aldh18a1	G	T	19: 40,553,282 (GRCm39)	Q487K	probably damaging	Het
Aldh3b1	G	A	19: 3,971,271 (GRCm39)		probably benign	Het
Asb18	T	G	1: 89,896,302 (GRCm39)	D246A	probably benign	Het
Atp2b1	T	C	10: 98,832,750 (GRCm39)	V417A	probably damaging	Het
Bcl2l15	A	G	3: 103,745,914 (GRCm39)		probably null	Het
Brd10	A	T	19: 29,720,998 (GRCm39)	S743T	probably damaging	Het
Cage1	T	A	13: 38,207,309 (GRCm39)	K285*	probably null	Het
Ccn2	A	C	10: 24,472,695 (GRCm39)	T202P	probably damaging	Het
Cldn17	A	G	16: 88,303,444 (GRCm39)	L95P	probably damaging	Het
Cldn20	A	T	17: 3,583,157 (GRCm39)	D110V	probably damaging	Het
Cnot10	T	C	9: 114,444,067 (GRCm39)	T443A	probably benign	Het
Col14a1	T	A	15: 55,310,858 (GRCm39)		probably benign	Het
Col23a1	T	C	11: 51,418,716 (GRCm39)	Y135H	unknown	Het
Cse1l	T	C	2: 166,768,331 (GRCm39)	S210P	probably damaging	Het
Cspg4	T	G	9: 56,796,027 (GRCm39)	V1254G	probably damaging	Het
Dip2c	A	G	13: 9,709,404 (GRCm39)	T1415A	probably damaging	Het
Epc2	A	G	2: 49,422,117 (GRCm39)	Y337C	probably damaging	Het
Epha2	A	G	4: 141,049,963 (GRCm39)	S799G	probably damaging	Het
Fndc10	A	G	4: 155,779,355 (GRCm39)	Y133C	probably damaging	Het
Gli3	G	T	13: 15,900,882 (GRCm39)	S1423I	probably benign	Het
Gm6034	A	T	17: 36,354,045 (GRCm39)		probably benign	Het
Gmip	A	G	8: 70,263,882 (GRCm39)	S109G	probably damaging	Het
Grik2	C	A	10: 49,399,842 (GRCm39)	W296L	possibly damaging	Het
Gucy2d	T	A	7: 98,103,268 (GRCm39)	L504H	probably damaging	Het
Il6	T	A	5: 30,218,490 (GRCm39)	Y46N	possibly damaging	Het
Ints8	C	A	4: 11,241,684 (GRCm39)	C253F	probably damaging	Het
Itga9	A	G	9: 118,527,374 (GRCm39)		probably benign	Het
Kcna7	T	C	7: 45,056,345 (GRCm39)	V187A	possibly damaging	Het
Kdm5b	G	T	1: 134,540,919 (GRCm39)		probably benign	Het
Knl1	T	G	2: 118,906,815 (GRCm39)	S1635A	probably damaging	Het
Lce1b	A	G	3: 92,563,318 (GRCm39)	S72P	unknown	Het
Lox	T	G	18: 52,653,983 (GRCm39)		probably null	Het
Mdc1	A	G	17: 36,158,718 (GRCm39)	D366G	possibly damaging	Het
Meiob	T	C	17: 25,053,021 (GRCm39)	C344R	probably damaging	Het
Mier2	A	G	10: 79,384,664 (GRCm39)	V150A	probably damaging	Het
Mon2	A	T	10: 122,867,002 (GRCm39)	M551K	probably damaging	Het
Mrps15	A	G	4: 125,945,187 (GRCm39)	T125A	probably benign	Het
Mtmr14	A	G	6: 113,230,693 (GRCm39)	H99R	probably damaging	Het
Mup4	A	G	4: 59,960,598 (GRCm39)	M1T	probably null	Het
Mup5	G	A	4: 61,750,607 (GRCm39)	R179*	probably null	Het
Ncoa3	T	G	2: 165,911,221 (GRCm39)	V1326G	possibly damaging	Het
Noa1	A	T	5: 77,455,428 (GRCm39)	N429K	probably benign	Het
Nrxn1	C	T	17: 90,469,832 (GRCm39)	A241T	probably damaging	Het
Or1p1	A	T	11: 74,180,126 (GRCm39)	Y218F	probably damaging	Het
Or2t49	C	T	11: 58,392,765 (GRCm39)	V206M	probably damaging	Het
Pcdh9	G	A	14: 94,125,471 (GRCm39)	S233L	probably damaging	Het
Peg3	C	A	7: 6,712,900 (GRCm39)	S774I	possibly damaging	Het
Phyh	A	G	2: 4,942,620 (GRCm39)	K321R	probably null	Het
Plcg1	T	A	2: 160,573,840 (GRCm39)	M35K	probably damaging	Het
Pnisr	C	T	4: 21,874,086 (GRCm39)		probably benign	Het
Ppargc1b	T	A	18: 61,440,275 (GRCm39)		probably null	Het
Prcd	A	C	11: 116,548,371 (GRCm39)	S27R	probably benign	Het
Prx	T	A	7: 27,216,948 (GRCm39)	M622K	probably benign	Het
Psmd1	T	A	1: 85,999,567 (GRCm39)	D51E	probably damaging	Het
Psmd13	C	T	7: 140,463,430 (GRCm39)	T38I	probably damaging	Het
Ptprf	A	C	4: 118,082,096 (GRCm39)	D1047E	possibly damaging	Het
Rai14	C	A	15: 10,633,314 (GRCm39)	Q25H	probably damaging	Het
Riiad1	G	A	3: 94,380,176 (GRCm39)	P40S	possibly damaging	Het
Rnft1	T	A	11: 86,377,096 (GRCm39)	N53K	probably benign	Het
Scn4a	C	T	11: 106,211,646 (GRCm39)	R1457H	probably benign	Het
Sema6c	A	T	3: 95,078,099 (GRCm39)	I492F	probably damaging	Het
Shbg	T	C	11: 69,505,798 (GRCm39)	H403R	probably damaging	Het
Slc15a5	A	T	6: 138,049,845 (GRCm39)		probably benign	Het
Slc38a1	G	A	15: 96,485,016 (GRCm39)	T221M	probably damaging	Het
Slc6a16	T	A	7: 44,910,600 (GRCm39)	V375E	possibly damaging	Het
Slc6a17	T	A	3: 107,379,492 (GRCm39)	M559L	probably damaging	Het
Slmap	A	G	14: 26,181,373 (GRCm39)		probably benign	Het
Sorcs2	G	A	5: 36,184,092 (GRCm39)	R965W	probably damaging	Het
St8sia4	C	A	1: 95,581,394 (GRCm39)	R116L	probably damaging	Het
Tcaf1	A	C	6: 42,652,272 (GRCm39)	S737A	possibly damaging	Het
Thbs2	T	A	17: 14,899,072 (GRCm39)	Y676F	probably benign	Het
Tmod2	A	G	9: 75,493,324 (GRCm39)		probably benign	Het
Trim75	T	C	8: 65,435,391 (GRCm39)		probably null	Het
Ubr5	A	T	15: 38,042,090 (GRCm39)	S169T	probably benign	Het
Usp54	A	T	14: 20,633,508 (GRCm39)	Y37*	probably null	Het
Vstm5	A	G	9: 15,168,663 (GRCm39)	R76G	probably benign	Het
Zfp608	T	C	18: 55,032,321 (GRCm39)	T540A	probably benign	Het
Zfp947	A	C	17: 22,365,184 (GRCm39)	N163K	probably benign	Het
Zfyve26	T	C	12: 79,308,573 (GRCm39)	H228R	possibly damaging	Het

Other mutations in Vill

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00943:Vill	APN	9	118,892,380 (GRCm39)	missense	probably damaging	1.00
IGL01024:Vill	APN	9	118,899,418 (GRCm39)	critical splice donor site	probably null
IGL01934:Vill	APN	9	118,895,877 (GRCm39)	missense	probably damaging	1.00
IGL02118:Vill	APN	9	118,889,466 (GRCm39)	missense	probably benign	0.44
IGL02260:Vill	APN	9	118,887,509 (GRCm39)	missense	probably benign	0.00
IGL02507:Vill	APN	9	118,899,845 (GRCm39)	missense	possibly damaging	0.86
IGL02870:Vill	APN	9	118,890,967 (GRCm39)	missense	probably damaging	1.00
IGL02941:Vill	APN	9	118,895,955 (GRCm39)	unclassified	probably benign
IGL02835:Vill	UTSW	9	118,896,513 (GRCm39)	missense	probably benign	0.11
R0285:Vill	UTSW	9	118,899,895 (GRCm39)	unclassified	probably benign
R0571:Vill	UTSW	9	118,899,701 (GRCm39)	missense	possibly damaging	0.93
R1024:Vill	UTSW	9	118,895,892 (GRCm39)	missense	probably damaging	1.00
R1168:Vill	UTSW	9	118,899,389 (GRCm39)	missense	probably damaging	0.99
R1374:Vill	UTSW	9	118,890,562 (GRCm39)	missense	probably benign	0.03
R1400:Vill	UTSW	9	118,892,415 (GRCm39)	missense	probably benign	0.01
R1551:Vill	UTSW	9	118,892,440 (GRCm39)	missense	probably benign
R1584:Vill	UTSW	9	118,894,654 (GRCm39)	missense	probably damaging	1.00
R1630:Vill	UTSW	9	118,899,769 (GRCm39)	missense	probably benign	0.37
R1946:Vill	UTSW	9	118,887,560 (GRCm39)	missense	probably benign
R2311:Vill	UTSW	9	118,894,965 (GRCm39)	missense	probably benign	0.08
R2392:Vill	UTSW	9	118,896,628 (GRCm39)	unclassified	probably benign
R2509:Vill	UTSW	9	118,899,370 (GRCm39)	missense	possibly damaging	0.84
R2760:Vill	UTSW	9	118,895,950 (GRCm39)	critical splice donor site	probably null
R3886:Vill	UTSW	9	118,895,782 (GRCm39)	missense	probably benign	0.24
R3944:Vill	UTSW	9	118,897,499 (GRCm39)	missense	probably benign	0.10
R4245:Vill	UTSW	9	118,900,359 (GRCm39)	unclassified	probably benign
R4246:Vill	UTSW	9	118,889,461 (GRCm39)	missense	probably damaging	1.00
R4771:Vill	UTSW	9	118,897,502 (GRCm39)	missense	probably damaging	1.00
R4889:Vill	UTSW	9	118,892,409 (GRCm39)	missense	possibly damaging	0.50
R4932:Vill	UTSW	9	118,890,579 (GRCm39)	missense	probably damaging	1.00
R4946:Vill	UTSW	9	118,897,508 (GRCm39)	missense	probably damaging	1.00
R5121:Vill	UTSW	9	118,899,093 (GRCm39)	missense	possibly damaging	0.92
R5646:Vill	UTSW	9	118,900,230 (GRCm39)	missense	probably damaging	1.00
R6089:Vill	UTSW	9	118,886,867 (GRCm39)	missense	probably benign	0.00
R6149:Vill	UTSW	9	118,887,482 (GRCm39)	missense	possibly damaging	0.67
R6167:Vill	UTSW	9	118,895,932 (GRCm39)	missense	probably damaging	0.98
R6318:Vill	UTSW	9	118,892,716 (GRCm39)	missense	probably benign	0.15
R6319:Vill	UTSW	9	118,892,716 (GRCm39)	missense	probably benign	0.15
R6590:Vill	UTSW	9	118,890,975 (GRCm39)	missense	probably benign	0.04
R6690:Vill	UTSW	9	118,890,975 (GRCm39)	missense	probably benign	0.04
R6889:Vill	UTSW	9	118,894,950 (GRCm39)	missense	possibly damaging	0.58
R7207:Vill	UTSW	9	118,900,281 (GRCm39)	missense	possibly damaging	0.64
R7353:Vill	UTSW	9	118,894,561 (GRCm39)	missense	probably damaging	0.99
R7398:Vill	UTSW	9	118,899,716 (GRCm39)	missense	probably benign	0.26
R7883:Vill	UTSW	9	118,894,589 (GRCm39)	nonsense	probably null
R8165:Vill	UTSW	9	118,895,821 (GRCm39)	missense	probably damaging	0.98
R8281:Vill	UTSW	9	118,887,547 (GRCm39)	missense	probably damaging	1.00
R8380:Vill	UTSW	9	118,886,917 (GRCm39)	missense	probably benign	0.04
R8685:Vill	UTSW	9	118,895,795 (GRCm39)	missense	probably benign	0.00
R8847:Vill	UTSW	9	118,897,514 (GRCm39)	missense	probably damaging	0.99
R8968:Vill	UTSW	9	118,892,671 (GRCm39)	critical splice donor site	probably null
R9290:Vill	UTSW	9	118,890,562 (GRCm39)	missense	probably benign	0.03
RF005:Vill	UTSW	9	118,889,507 (GRCm39)	missense	probably damaging	1.00
Z1176:Vill	UTSW	9	118,899,033 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GGGCCACCAAAGCACTGTAGAAGAC -3'
(R):5'- ATGGACTCAACACAGCCAGGGACG -3'

Sequencing Primer
(F):5'- GTAGAAGACACCAAGGCCCTG -3'
(R):5'- catggaccacaggacatcag -3'

Posted On

2014-05-14