Mutagenetix > Incidental Mutation

Incidental Mutation 'R1691:Slco6d1'

191757

Institutional Source

Beutler Lab

Gene Symbol

Slco6d1

Ensembl Gene

ENSMUSG00000026336

Gene Name

solute carrier organic anion transporter family, member 6d1

Synonyms

4921511I05Rik

MMRRC Submission

039724-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.051) question?

Stock #

R1691 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

98348849-98444716 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 98435292 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Leucine at position 669 (H669L)

Ref Sequence

ENSEMBL: ENSMUSP00000027575 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027575] [ENSMUST00000160796] [ENSMUST00000162468]

AlphaFold

Q9D5W6

Predicted Effect

probably benign
Transcript: ENSMUST00000027575
AA Change: H669L

PolyPhen 2 Score 0.336 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000027575
Gene: ENSMUSG00000026336
AA Change: H669L

Domain	Start	End	E-Value	Type
Pfam:MFS_1	86	463	1.8e-13	PFAM
KAZAL	483	527	2.3e0	SMART
low complexity region	558	572	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000160796

SMART Domains

Protein: ENSMUSP00000123850
Gene: ENSMUSG00000026336

Domain	Start	End	E-Value	Type
Pfam:MFS_1	86	463	2.4e-13	PFAM
KAZAL	483	527	2.3e0	SMART
low complexity region	558	572	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000162468

SMART Domains

Protein: ENSMUSP00000125258
Gene: ENSMUSG00000026336

Domain	Start	End	E-Value	Type
Pfam:OATP	64	313	2.1e-27	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000162782

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.7%
20x: 93.6%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamtsl3	T	C	7: 82,148,814 (GRCm39)	S283P	probably damaging	Het
Adck2	T	A	6: 39,551,902 (GRCm39)	L223*	probably null	Het
Ank	T	C	15: 27,591,030 (GRCm39)	W390R	probably damaging	Het
Ano5	T	C	7: 51,240,327 (GRCm39)	Y752H	probably damaging	Het
Apcs	T	A	1: 172,722,160 (GRCm39)	D62V	probably damaging	Het
Atad5	A	G	11: 79,986,358 (GRCm39)	T482A	probably benign	Het
Atp7b	A	G	8: 22,501,039 (GRCm39)	Y955H	possibly damaging	Het
Ccdc13	A	T	9: 121,654,134 (GRCm39)		probably null	Het
Ccdc157	G	A	11: 4,099,030 (GRCm39)	P159S	probably benign	Het
Cdhr3	C	T	12: 33,132,246 (GRCm39)	V126M	probably damaging	Het
Cdr1	T	C	X: 60,227,780 (GRCm39)	D462G	possibly damaging	Het
Cisd1	A	G	10: 71,180,559 (GRCm39)	V9A	probably benign	Het
Col19a1	T	C	1: 24,576,022 (GRCm39)	R107G	unknown	Het
Col1a2	C	A	6: 4,536,038 (GRCm39)	H972Q	unknown	Het
Col3a1	T	A	1: 45,387,776 (GRCm39)		probably benign	Het
Dbnl	A	G	11: 5,747,174 (GRCm39)	S235G	probably null	Het
Dock4	T	A	12: 40,775,754 (GRCm39)	S566T	probably benign	Het
Efcab6	T	C	15: 83,817,407 (GRCm39)	D722G	probably benign	Het
Esyt1	T	C	10: 128,361,403 (GRCm39)	Q97R	probably benign	Het
Fat2	G	A	11: 55,202,678 (GRCm39)	T132I	probably damaging	Het
Fgd2	C	T	17: 29,597,918 (GRCm39)	Q618*	probably null	Het
Flnc	T	A	6: 29,441,213 (GRCm39)	V389E	probably benign	Het
Garnl3	A	T	2: 32,887,675 (GRCm39)	Y778*	probably null	Het
Gpaa1	A	T	15: 76,216,416 (GRCm39)	Y45F	probably damaging	Het
Grid1	A	T	14: 35,174,286 (GRCm39)	I643F	probably damaging	Het
Gsdmc2	T	C	15: 63,705,314 (GRCm39)	D133G	probably damaging	Het
Hp	T	C	8: 110,302,204 (GRCm39)	D248G	probably benign	Het
Hsh2d	G	A	8: 72,954,304 (GRCm39)	D229N	probably benign	Het
Ifna13	T	C	4: 88,562,291 (GRCm39)	D111G	probably benign	Het
Il9r	T	A	11: 32,141,829 (GRCm39)	Q309L	possibly damaging	Het
Insyn2a	C	T	7: 134,520,015 (GRCm39)	A172T	probably damaging	Het
Ints1	A	T	5: 139,754,687 (GRCm39)	D617E	probably damaging	Het
Kcnj12	A	T	11: 60,961,103 (GRCm39)	N467I	possibly damaging	Het
Kmt2e	T	A	5: 23,669,847 (GRCm39)	D111E	probably damaging	Het
Lama4	A	G	10: 38,956,559 (GRCm39)	K1161E	probably benign	Het
Lamc1	C	T	1: 153,122,995 (GRCm39)	D732N	probably benign	Het
Larp1	A	G	11: 57,938,874 (GRCm39)	T517A	probably benign	Het
Lrp12	A	G	15: 39,735,661 (GRCm39)	I757T	probably damaging	Het
Max	T	C	12: 77,000,046 (GRCm39)	D23G	possibly damaging	Het
Nars1	A	T	18: 64,649,485 (GRCm39)		probably null	Het
Nipsnap3a	G	A	4: 52,994,185 (GRCm39)	D91N	probably null	Het
Nphp3	A	G	9: 103,880,010 (GRCm39)	T11A	probably benign	Het
Nr2c2	C	A	6: 92,133,673 (GRCm39)	T226K	probably damaging	Het
Nrxn1	A	G	17: 90,469,717 (GRCm39)	I1288T	probably damaging	Het
Nt5c1b	C	T	12: 10,425,537 (GRCm39)	T360I	possibly damaging	Het
Ofcc1	C	T	13: 40,362,305 (GRCm39)	G206R	probably benign	Het
Or10a3b	A	G	7: 108,444,348 (GRCm39)	Y290H	possibly damaging	Het
Or13a21	A	T	7: 139,998,855 (GRCm39)	L277Q	probably damaging	Het
Or4e1	A	T	14: 52,701,288 (GRCm39)	H59Q	possibly damaging	Het
Or4k37	G	A	2: 111,159,198 (GRCm39)	V145I	probably benign	Het
Or6d14	A	G	6: 116,533,538 (GRCm39)	T51A	probably benign	Het
Or9i1b	C	T	19: 13,896,783 (GRCm39)	T133I	probably benign	Het
Pcsk1	A	G	13: 75,280,344 (GRCm39)	D723G	possibly damaging	Het
Phrf1	C	A	7: 140,841,787 (GRCm39)	Y715*	probably null	Het
Pigm	T	C	1: 172,204,354 (GRCm39)	V30A	probably benign	Het
Pkd1l2	A	T	8: 117,783,158 (GRCm39)	F721I	possibly damaging	Het
Pla2g15	A	G	8: 106,881,581 (GRCm39)	D70G	possibly damaging	Het
Prl7d1	A	T	13: 27,893,365 (GRCm39)	I182N	probably damaging	Het
Prss23	T	C	7: 89,159,922 (GRCm39)	K49R	probably benign	Het
Rps6	A	T	4: 86,775,046 (GRCm39)	D19E	probably benign	Het
Svil	G	T	18: 5,056,336 (GRCm39)	C490F	probably benign	Het
Tom1	T	C	8: 75,778,227 (GRCm39)	I103T	probably damaging	Het
Trim10	T	A	17: 37,187,791 (GRCm39)	Y336N	probably damaging	Het
Trim43c	G	T	9: 88,722,752 (GRCm39)	V133F	probably damaging	Het
Tvp23a	A	G	16: 10,246,551 (GRCm39)	L78P	possibly damaging	Het
Ugt2b38	T	A	5: 87,571,991 (GRCm39)	I14L	probably benign	Het
Unc5a	A	C	13: 55,150,737 (GRCm39)	M520L	probably damaging	Het
Vmn1r174	T	A	7: 23,453,337 (GRCm39)	M1K	probably null	Het
Vmn2r58	C	T	7: 41,486,913 (GRCm39)	G661R	possibly damaging	Het
Vps41	A	C	13: 19,025,413 (GRCm39)	D471A	probably damaging	Het
Zbtb14	C	A	17: 69,695,497 (GRCm39)	F398L	probably damaging	Het
Zfp462	T	A	4: 55,013,489 (GRCm39)	F1818L	possibly damaging	Het
Zp3	G	A	5: 136,009,135 (GRCm39)	E50K	possibly damaging	Het

Other mutations in Slco6d1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00420:Slco6d1	APN	1	98,359,955 (GRCm39)	splice site	probably null
IGL00678:Slco6d1	APN	1	98,424,069 (GRCm39)	missense	probably benign	0.01
IGL00790:Slco6d1	APN	1	98,348,925 (GRCm39)	utr 5 prime	probably benign
IGL01694:Slco6d1	APN	1	98,427,570 (GRCm39)	missense	probably damaging	1.00
IGL02003:Slco6d1	APN	1	98,408,493 (GRCm39)	missense	probably damaging	1.00
IGL02059:Slco6d1	APN	1	98,374,531 (GRCm39)	missense	possibly damaging	0.95
IGL02085:Slco6d1	APN	1	98,371,468 (GRCm39)	missense	probably damaging	1.00
IGL02683:Slco6d1	APN	1	98,408,397 (GRCm39)	missense	probably benign	0.05
IGL02736:Slco6d1	APN	1	98,356,036 (GRCm39)	missense	possibly damaging	0.55
IGL03279:Slco6d1	APN	1	98,394,405 (GRCm39)	missense	probably damaging	1.00
BB008:Slco6d1	UTSW	1	98,356,141 (GRCm39)	missense	probably damaging	1.00
BB018:Slco6d1	UTSW	1	98,356,141 (GRCm39)	missense	probably damaging	1.00
PIT4581001:Slco6d1	UTSW	1	98,351,050 (GRCm39)	missense	possibly damaging	0.46
R0326:Slco6d1	UTSW	1	98,418,359 (GRCm39)	missense	probably benign	0.02
R0359:Slco6d1	UTSW	1	98,394,422 (GRCm39)	missense	probably benign	0.21
R0554:Slco6d1	UTSW	1	98,394,422 (GRCm39)	missense	probably benign	0.21
R0589:Slco6d1	UTSW	1	98,427,472 (GRCm39)	splice site	probably benign
R0733:Slco6d1	UTSW	1	98,355,994 (GRCm39)	nonsense	probably null
R0883:Slco6d1	UTSW	1	98,349,124 (GRCm39)	missense	probably benign	0.00
R1316:Slco6d1	UTSW	1	98,394,518 (GRCm39)	missense	probably benign	0.02
R1370:Slco6d1	UTSW	1	98,350,819 (GRCm39)	missense	probably benign	0.01
R1401:Slco6d1	UTSW	1	98,418,341 (GRCm39)	missense	probably damaging	1.00
R1740:Slco6d1	UTSW	1	98,356,097 (GRCm39)	missense	probably damaging	1.00
R1767:Slco6d1	UTSW	1	98,418,274 (GRCm39)	missense	possibly damaging	0.90
R1827:Slco6d1	UTSW	1	98,348,941 (GRCm39)	missense	probably damaging	0.96
R2138:Slco6d1	UTSW	1	98,371,385 (GRCm39)	missense	probably benign	0.19
R2849:Slco6d1	UTSW	1	98,394,441 (GRCm39)	missense	probably benign	0.02
R3753:Slco6d1	UTSW	1	98,427,502 (GRCm39)	missense	probably damaging	0.99
R4066:Slco6d1	UTSW	1	98,391,571 (GRCm39)	critical splice acceptor site	probably benign
R4429:Slco6d1	UTSW	1	98,424,091 (GRCm39)	missense	possibly damaging	0.66
R4480:Slco6d1	UTSW	1	98,435,299 (GRCm39)	nonsense	probably null
R4656:Slco6d1	UTSW	1	98,350,928 (GRCm39)	missense	probably benign	0.06
R4810:Slco6d1	UTSW	1	98,350,979 (GRCm39)	missense	possibly damaging	0.83
R4814:Slco6d1	UTSW	1	98,350,899 (GRCm39)	missense	probably benign	0.15
R5389:Slco6d1	UTSW	1	98,371,369 (GRCm39)	missense	probably benign	0.00
R5504:Slco6d1	UTSW	1	98,349,064 (GRCm39)	missense	probably damaging	0.99
R5619:Slco6d1	UTSW	1	98,423,947 (GRCm39)	missense	probably damaging	1.00
R5688:Slco6d1	UTSW	1	98,408,493 (GRCm39)	missense	probably damaging	1.00
R5820:Slco6d1	UTSW	1	98,427,503 (GRCm39)	missense	probably damaging	0.97
R5878:Slco6d1	UTSW	1	98,391,561 (GRCm39)	splice site	probably benign
R6261:Slco6d1	UTSW	1	98,427,588 (GRCm39)	missense	probably benign	0.10
R6450:Slco6d1	UTSW	1	98,349,192 (GRCm39)	missense	probably benign	0.29
R6452:Slco6d1	UTSW	1	98,348,937 (GRCm39)	missense	probably benign	0.44
R7338:Slco6d1	UTSW	1	98,349,097 (GRCm39)	missense	probably benign	0.11
R7375:Slco6d1	UTSW	1	98,349,172 (GRCm39)	missense	probably damaging	1.00
R7456:Slco6d1	UTSW	1	98,349,082 (GRCm39)	missense	possibly damaging	0.66
R7567:Slco6d1	UTSW	1	98,425,252 (GRCm39)	missense	probably damaging	1.00
R7729:Slco6d1	UTSW	1	98,425,248 (GRCm39)	missense	probably damaging	0.98
R7931:Slco6d1	UTSW	1	98,356,141 (GRCm39)	missense	probably damaging	1.00
R8088:Slco6d1	UTSW	1	98,394,431 (GRCm39)	missense	possibly damaging	0.75
R9021:Slco6d1	UTSW	1	98,371,396 (GRCm39)	missense	probably benign	0.18
R9080:Slco6d1	UTSW	1	98,348,983 (GRCm39)	missense	probably benign	0.01
R9123:Slco6d1	UTSW	1	98,423,919 (GRCm39)	missense	probably damaging	1.00
R9310:Slco6d1	UTSW	1	98,427,619 (GRCm39)	missense	possibly damaging	0.71

Predicted Primers

PCR Primer
(F):5'- CGATATCCCTTAAAACAGATGCCATAGTCC -3'
(R):5'- TCCAGGTGGAAGTAAAAGGTAGAGATATGAAA -3'

Sequencing Primer
(F):5'- GGAACATTACTTTTTGGAAGCTCTC -3'
(R):5'- AAAACATGGGTAGTGCAAATTTTC -3'

Posted On

2014-05-14