Mutagenetix > Incidental Mutation

Incidental Mutation 'R1698:Gkn1'

192403

Institutional Source

Beutler Lab

Gene Symbol

Gkn1

Ensembl Gene

ENSMUSG00000030050

Gene Name

gastrokine 1

Synonyms

AMP-18, 2200002K21Rik, BRICD1

MMRRC Submission

039731-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1698 (G1)

Quality Score

213

Status

Not validated

Chromosome

Chromosomal Location

87345650-87350942 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 87347169 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Cysteine at position 119 (Y119C)

Ref Sequence

ENSEMBL: ENSMUSP00000032129 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032129]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000032129
AA Change: Y119C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000032129
Gene: ENSMUSG00000030050
AA Change: Y119C

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
low complexity region	23	36	N/A	INTRINSIC
BRICHOS	54	148	5.64e-37	SMART

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.6%
20x: 93.6%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is found to be down-regulated in human gastric cancer tissue as compared to normal gastric mucosa. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 82 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2m	A	C	6: 121,645,158 (GRCm38)	E340A	possibly damaging	Het
Abca13	A	G	11: 9,314,507 (GRCm38)	D2963G	probably benign	Het
Actn3	T	C	19: 4,862,207 (GRCm38)	D783G	possibly damaging	Het
Adamtsl2	A	G	2: 27,103,127 (GRCm38)	E723G	possibly damaging	Het
Agrn	G	T	4: 156,166,558 (GRCm38)	Q1931K	probably benign	Het
Ankrd27	G	A	7: 35,614,521 (GRCm38)	A426T	probably benign	Het
Atg9b	C	A	5: 24,388,188 (GRCm38)	G406C	probably damaging	Het
BC005561	C	T	5: 104,520,510 (GRCm38)	A966V	probably benign	Het
C1ra	A	T	6: 124,522,766 (GRCm38)	Q637L	probably benign	Het
Cdhr2	A	T	13: 54,719,581 (GRCm38)	M438L	probably benign	Het
Cep350	T	C	1: 155,953,358 (GRCm38)	I267V	possibly damaging	Het
Chrna5	A	G	9: 55,004,642 (GRCm38)	Y138C	probably damaging	Het
Chst3	T	A	10: 60,185,703 (GRCm38)	M441L	probably benign	Het
Cmya5	G	A	13: 93,063,519 (GRCm38)	P3434S	probably benign	Het
Cog2	T	A	8: 124,525,683 (GRCm38)	L42Q	probably damaging	Het
Cpq	A	T	15: 33,250,126 (GRCm38)	I210F	probably benign	Het
Crnn	C	A	3: 93,148,458 (GRCm38)	Q184K	probably damaging	Het
Csnka2ip	A	T	16: 64,478,059 (GRCm38)	Y647*	probably null	Het
D5Ertd579e	C	T	5: 36,604,530 (GRCm38)	R1331H	probably benign	Het
Dennd5a	C	T	7: 109,917,380 (GRCm38)		probably null	Het
Dync1h1	A	G	12: 110,626,992 (GRCm38)	Q1231R	possibly damaging	Het
Erbin	T	A	13: 103,833,731 (GRCm38)	I1126F	possibly damaging	Het
Fastkd1	T	C	2: 69,702,469 (GRCm38)	D518G	probably benign	Het
Gcc1	A	G	6: 28,421,111 (GRCm38)	L69P	possibly damaging	Het
Gmpr	T	G	13: 45,517,044 (GRCm38)	W81G	probably benign	Het
Gyg	T	A	3: 20,138,051 (GRCm38)	I236F	probably benign	Het
Hcrtr2	T	C	9: 76,246,453 (GRCm38)	Y219C	probably damaging	Het
Hmcn1	G	A	1: 150,565,369 (GRCm38)	Q5379*	probably null	Het
Kank1	T	C	19: 25,411,317 (GRCm38)	C785R	probably benign	Het
Lrp1b	A	T	2: 40,851,806 (GRCm38)	C3036*	probably null	Het
Mdga2	T	C	12: 66,689,335 (GRCm38)	D373G	probably damaging	Het
Mgat2	A	T	12: 69,185,719 (GRCm38)	I356F	probably benign	Het
Miga2	A	G	2: 30,377,997 (GRCm38)	D346G	probably damaging	Het
Mprip	T	A	11: 59,760,258 (GRCm38)	L1596Q	possibly damaging	Het
Mroh2b	G	A	15: 4,914,140 (GRCm38)	R386Q	probably benign	Het
Mst1r	T	A	9: 107,919,980 (GRCm38)	S1349R	probably benign	Het
Mtmr3	C	T	11: 4,492,825 (GRCm38)	R403H	possibly damaging	Het
Mycbpap	G	A	11: 94,508,143 (GRCm38)	Q460*	probably null	Het
Myo9a	T	C	9: 59,868,181 (GRCm38)	V1025A	probably benign	Het
Ncapd2	C	T	6: 125,168,590 (GRCm38)	E1365K	probably null	Het
Nkiras2	C	A	11: 100,625,163 (GRCm38)	D105E	probably damaging	Het
Nolc1	T	G	19: 46,081,431 (GRCm38)		probably null	Het
Nos1	T	C	5: 117,867,232 (GRCm38)	F6L	probably benign	Het
Olfr1112	G	T	2: 87,191,737 (GRCm38)	V17L	probably benign	Het
Olfr1278	T	A	2: 111,292,560 (GRCm38)	C97*	probably null	Het
Olfr1369-ps1	C	T	13: 21,116,565 (GRCm38)	T291I	probably benign	Het
Olfr218	A	T	1: 173,203,371 (GRCm38)	N5I	probably damaging	Het
Olfr325	T	C	11: 58,581,251 (GRCm38)	Y136H	probably damaging	Het
Olfr910	T	A	9: 38,539,256 (GRCm38)	Y120*	probably null	Het
Pfkm	A	G	15: 98,128,318 (GRCm38)	E598G	possibly damaging	Het
Phf2	A	T	13: 48,807,630 (GRCm38)	D861E	unknown	Het
Polr2a	A	G	11: 69,739,877 (GRCm38)		probably null	Het
Popdc2	G	A	16: 38,369,491 (GRCm38)	V167M	probably damaging	Het
Ptpn22	T	C	3: 103,885,798 (GRCm38)	S422P	probably benign	Het
Rasa2	T	C	9: 96,568,375 (GRCm38)	K490R	possibly damaging	Het
Rbfox3	T	A	11: 118,495,221 (GRCm38)	D286V	probably damaging	Het
Rdh13	A	G	7: 4,427,791 (GRCm38)	W223R	probably damaging	Het
Riok3	T	C	18: 12,128,929 (GRCm38)	S7P	probably benign	Het
Rnaseh2b	A	G	14: 62,353,632 (GRCm38)	E144G	probably benign	Het
Rnf20	C	T	4: 49,651,498 (GRCm38)	Q655*	probably null	Het
Rpap2	T	C	5: 107,603,550 (GRCm38)	Y8H	probably damaging	Het
Slc5a10	T	C	11: 61,709,602 (GRCm38)	Y181C	probably benign	Het
Snd1	G	T	6: 28,888,253 (GRCm38)	G896*	probably null	Het
Spast	C	T	17: 74,356,160 (GRCm38)	Q158*	probably null	Het
Tas2r104	G	A	6: 131,685,584 (GRCm38)	S54F	probably damaging	Het
Tcaf2	C	T	6: 42,628,017 (GRCm38)	W611*	probably null	Het
Timp4	G	A	6: 115,250,403 (GRCm38)		probably null	Het
Tmem45a	G	A	16: 56,823,570 (GRCm38)	S72L	probably benign	Het
Tnrc18	T	C	5: 142,788,703 (GRCm38)	T124A	possibly damaging	Het
Tns2	C	T	15: 102,108,934 (GRCm38)	R281C	probably damaging	Het
Ttn	T	C	2: 76,942,915 (GRCm38)	D2381G	probably damaging	Het
Uevld	T	C	7: 46,955,624 (GRCm38)	T41A	possibly damaging	Het
Ugcg	C	T	4: 59,207,798 (GRCm38)	P46S	probably benign	Het
Unc5d	T	C	8: 28,696,478 (GRCm38)	E527G	probably damaging	Het
Vmn2r125	C	T	4: 156,351,038 (GRCm38)	T237I	probably benign	Het
Vmn2r63	A	C	7: 42,933,614 (GRCm38)	I59S	probably benign	Het
Vps72	G	A	3: 95,118,695 (GRCm38)	S106N	probably benign	Het
Zan	A	C	5: 137,409,669 (GRCm38)		probably benign	Het
Zbtb38	T	C	9: 96,685,462 (GRCm38)	K1190E	probably benign	Het
Zc3h6	T	C	2: 129,017,358 (GRCm38)	V1103A	probably benign	Het
Zfp407	G	A	18: 84,562,157 (GRCm38)	T277I	probably damaging	Het
Zfp804b	A	G	5: 6,769,509 (GRCm38)	S1149P	probably damaging	Het

Other mutations in Gkn1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00507:Gkn1	APN	6	87,346,339 (GRCm38)	missense	probably damaging	0.99
IGL02314:Gkn1	APN	6	87,349,121 (GRCm38)	missense	probably benign	0.17
R1240:Gkn1	UTSW	6	87,349,116 (GRCm38)	missense	probably damaging	1.00
R1750:Gkn1	UTSW	6	87,349,123 (GRCm38)	missense	unknown
R5747:Gkn1	UTSW	6	87,346,337 (GRCm38)	missense	probably benign	0.01
R7220:Gkn1	UTSW	6	87,349,153 (GRCm38)	splice site	probably null
R7352:Gkn1	UTSW	6	87,348,118 (GRCm38)	missense	possibly damaging	0.94
R7799:Gkn1	UTSW	6	87,348,181 (GRCm38)	missense	probably damaging	1.00
R8986:Gkn1	UTSW	6	87,348,178 (GRCm38)	missense	probably damaging	1.00
R9447:Gkn1	UTSW	6	87,346,340 (GRCm38)	missense	probably benign	0.08
R9661:Gkn1	UTSW	6	87,348,191 (GRCm38)	missense	probably damaging	1.00
R9725:Gkn1	UTSW	6	87,346,307 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CACATGATTGGTCCGTCTGTGGTC -3'
(R):5'- AGCCCGTGGTTTTCACAGTCAG -3'

Sequencing Primer
(F):5'- TCAGGGTACACACCTGGAAT -3'
(R):5'- ACAGTCAGACGCCTGAGTTATTC -3'

Posted On

2014-05-14