Mutagenetix > Incidental Mutation

Incidental Mutation 'R1753:Slc24a5'

193704

Institutional Source

Beutler Lab

Gene Symbol

Slc24a5

Ensembl Gene

ENSMUSG00000035183

Gene Name

solute carrier family 24, member 5

Synonyms

Oca6, NCX5, F630045L20Rik, NCKX5

MMRRC Submission

039785-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1753 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

125068124-125088677 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 125083195 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 252 (E252G)

Ref Sequence

ENSEMBL: ENSMUSP00000063887 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000067780] [ENSMUST00000070353] [ENSMUST00000110501] [ENSMUST00000142718] [ENSMUST00000147105] [ENSMUST00000152367]

AlphaFold

Q8C261

Predicted Effect

probably benign
Transcript: ENSMUST00000067780

SMART Domains

Protein: ENSMUSP00000066312
Gene: ENSMUSG00000027201

Domain	Start	End	E-Value	Type
RRM	92	165	1.84e-22	SMART
low complexity region	198	211	N/A	INTRINSIC
RRM	225	297	5.12e-21	SMART
low complexity region	318	335	N/A	INTRINSIC
low complexity region	430	450	N/A	INTRINSIC
RRM	498	569	6.15e-24	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000070353
AA Change: E252G

PolyPhen 2 Score 0.526 (Sensitivity: 0.88; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000063887
Gene: ENSMUSG00000035183
AA Change: E252G

Domain	Start	End	E-Value	Type
transmembrane domain	13	32	N/A	INTRINSIC
Pfam:Na_Ca_ex	72	216	1.1e-24	PFAM
low complexity region	274	290	N/A	INTRINSIC
low complexity region	311	324	N/A	INTRINSIC
Pfam:Na_Ca_ex	334	485	7.6e-31	PFAM
low complexity region	488	500	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000110501

SMART Domains

Protein: ENSMUSP00000106127
Gene: ENSMUSG00000027201

Domain	Start	End	E-Value	Type
RRM	92	165	1.84e-22	SMART
low complexity region	198	211	N/A	INTRINSIC
RRM	225	297	5.12e-21	SMART
low complexity region	318	335	N/A	INTRINSIC
low complexity region	430	450	N/A	INTRINSIC
RRM	498	569	6.15e-24	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000129945

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000139615

Predicted Effect

probably benign
Transcript: ENSMUST00000142718

SMART Domains

Protein: ENSMUSP00000115519
Gene: ENSMUSG00000027201

Domain	Start	End	E-Value	Type
RRM	92	165	1.84e-22	SMART
low complexity region	198	211	N/A	INTRINSIC
RRM	225	297	5.12e-21	SMART
low complexity region	318	335	N/A	INTRINSIC
low complexity region	351	376	N/A	INTRINSIC
low complexity region	427	443	N/A	INTRINSIC
RRM	491	562	6.15e-24	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000147105

SMART Domains

Protein: ENSMUSP00000114817
Gene: ENSMUSG00000027201

Domain	Start	End	E-Value	Type
RRM	92	165	1.84e-22	SMART
low complexity region	198	211	N/A	INTRINSIC
RRM	225	297	5.12e-21	SMART
low complexity region	318	335	N/A	INTRINSIC
low complexity region	410	426	N/A	INTRINSIC
RRM	474	545	6.15e-24	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149963

Predicted Effect

probably benign
Transcript: ENSMUST00000152367

SMART Domains

Protein: ENSMUSP00000123088
Gene: ENSMUSG00000027201

Domain	Start	End	E-Value	Type
RRM	92	165	1.84e-22	SMART
low complexity region	198	211	N/A	INTRINSIC
RRM	225	297	5.12e-21	SMART
low complexity region	318	335	N/A	INTRINSIC
low complexity region	351	376	N/A	INTRINSIC
low complexity region	447	467	N/A	INTRINSIC
RRM	515	586	6.15e-24	SMART

Coding Region Coverage

1x: 97.5%
3x: 96.9%
10x: 95.3%
20x: 92.6%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the potassium-dependent sodium/calcium exchanger family and encodes an intracellular membrane protein with 2 large hydrophilic loops and 2 sets of multiple transmembrane-spanning segments. Sequence variation in this gene has been associated with differences in skin pigmentation. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit hypopigmentation and ocular albinism. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 102 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca8b	A	T	11: 109,973,716 (GRCm38)	F409I	probably benign	Het
Adamts19	A	C	18: 59,007,372 (GRCm38)	I848L	possibly damaging	Het
Adamts5	T	C	16: 85,899,352 (GRCm38)	S306G	probably damaging	Het
Adamts8	T	G	9: 30,954,614 (GRCm38)	I486S	probably benign	Het
Adgrg5	T	C	8: 94,942,052 (GRCm38)	F499L	possibly damaging	Het
Akr1c21	T	A	13: 4,577,135 (GRCm38)	C145*	probably null	Het
Anp32b	T	G	4: 46,460,241 (GRCm38)		probably null	Het
Arhgap31	A	G	16: 38,601,612 (GRCm38)	V1364A	possibly damaging	Het
C2cd6	T	C	1: 59,094,833 (GRCm38)	R10G	possibly damaging	Het
Cacna2d1	A	G	5: 16,302,354 (GRCm38)	E367G	possibly damaging	Het
Ccdc81	C	T	7: 89,866,561 (GRCm38)	E637K	probably benign	Het
Cd2	A	T	3: 101,287,499 (GRCm38)	M91K	possibly damaging	Het
Cdc16	C	A	8: 13,764,688 (GRCm38)	Y157*	probably null	Het
Celsr3	G	T	9: 108,831,857 (GRCm38)	V1301F	probably damaging	Het
Cep164	C	T	9: 45,792,937 (GRCm38)	G961S	probably damaging	Het
Cep290	T	C	10: 100,513,981 (GRCm38)	V630A	probably benign	Het
Chd5	C	T	4: 152,378,815 (GRCm38)	S1451F	probably damaging	Het
Cldn23	A	C	8: 35,825,986 (GRCm38)	L116R	possibly damaging	Het
Cngb1	A	T	8: 95,297,773 (GRCm38)		probably benign	Het
Cpb1	G	T	3: 20,266,241 (GRCm38)	N151K	possibly damaging	Het
Cpn2	A	G	16: 30,260,100 (GRCm38)	F261S	probably damaging	Het
Crlf3	A	C	11: 80,057,872 (GRCm38)	V249G	probably damaging	Het
Csmd1	A	T	8: 16,157,120 (GRCm38)	Y1298*	probably null	Het
Cstf2t	C	A	19: 31,083,685 (GRCm38)	P207Q	possibly damaging	Het
Cym	A	C	3: 107,213,425 (GRCm38)	L288R	possibly damaging	Het
Cyp2j12	C	T	4: 96,121,432 (GRCm38)		probably null	Het
Dlx6	C	T	6: 6,863,665 (GRCm38)	Q96*	probably null	Het
Dnah7b	T	C	1: 46,322,335 (GRCm38)	F3465S	probably damaging	Het
Dnmt3a	A	T	12: 3,873,342 (GRCm38)	M181L	possibly damaging	Het
Duox1	T	A	2: 122,333,429 (GRCm38)	M859K	probably damaging	Het
Eif2b4	A	T	5: 31,192,940 (GRCm38)	S13T	probably benign	Het
Ercc6	T	C	14: 32,576,999 (GRCm38)	V1448A	probably benign	Het
Esp24	A	G	17: 39,040,002 (GRCm38)	E31G	possibly damaging	Het
F2rl2	T	A	13: 95,701,461 (GRCm38)	M338K	probably benign	Het
Fgfbp1	A	C	5: 43,979,923 (GRCm38)	L9R	possibly damaging	Het
Gal3st2b	A	T	1: 93,940,616 (GRCm38)	N188Y	probably damaging	Het
Gpr179	G	C	11: 97,346,578 (GRCm38)	C372W	probably damaging	Het
Grn	T	G	11: 102,433,267 (GRCm38)	C61G	probably damaging	Het
Herc1	T	G	9: 66,469,010 (GRCm38)	C3371G	probably damaging	Het
Herc1	T	C	9: 66,502,084 (GRCm38)		probably null	Het
Hmcn1	C	T	1: 150,586,468 (GRCm38)	G5153D	possibly damaging	Het
Ifi35	A	T	11: 101,456,635 (GRCm38)	R31W	probably damaging	Het
Ifit1bl1	T	A	19: 34,593,860 (GRCm38)	H399L	probably benign	Het
Irx3	G	A	8: 91,800,734 (GRCm38)	P114L	probably damaging	Het
Kat6a	T	A	8: 22,935,797 (GRCm38)	D1119E	probably benign	Het
Kmt2d	G	T	15: 98,843,482 (GRCm38)		probably benign	Het
Kng1	A	T	16: 23,079,119 (GRCm38)	H423L	possibly damaging	Het
Lrp2	T	A	2: 69,496,489 (GRCm38)	Q1746L	possibly damaging	Het
Lrrc29	A	T	8: 105,313,192 (GRCm38)	V517E	probably damaging	Het
Lrrc63	A	T	14: 75,086,344 (GRCm38)		probably null	Het
Mad2l1	T	A	6: 66,539,813 (GRCm38)	V163E	possibly damaging	Het
Map3k19	A	G	1: 127,822,680 (GRCm38)	M978T	probably benign	Het
Mon1a	A	C	9: 107,901,363 (GRCm38)	N262T	probably damaging	Het
Mpo	A	G	11: 87,795,881 (GRCm38)	N85D	probably benign	Het
Mpp4	T	C	1: 59,144,810 (GRCm38)	D244G	probably null	Het
Mstn	A	G	1: 53,066,558 (GRCm38)	Y353C	probably damaging	Het
Mx1	T	A	16: 97,454,158 (GRCm38)	N232Y	probably damaging	Het
Mycs	T	C	X: 5,468,103 (GRCm38)	R308G	probably benign	Het
Myh11	A	T	16: 14,277,870 (GRCm38)	D9E	probably benign	Het
Nfe2l3	A	T	6: 51,433,412 (GRCm38)	Q169L	probably null	Het
Nr5a1	G	T	2: 38,708,419 (GRCm38)	T122N	possibly damaging	Het
Nras	A	G	3: 103,058,979 (GRCm38)	T20A	probably damaging	Het
Obp2b	T	A	2: 25,738,640 (GRCm38)		probably null	Het
Olfr1109	T	C	2: 87,093,227 (GRCm38)	T57A	probably damaging	Het
Olfr1143	T	A	2: 87,802,762 (GRCm38)	F124L	probably benign	Het
Olfr1410	G	A	1: 92,608,400 (GRCm38)	V188M	probably benign	Het
Olfr365	A	G	2: 37,201,427 (GRCm38)	Y62C	probably damaging	Het
Olfr577	T	C	7: 102,973,056 (GRCm38)	N312S	probably benign	Het
Pcdh17	A	T	14: 84,477,654 (GRCm38)	T920S	probably benign	Het
Pcdh9	T	C	14: 93,887,225 (GRCm38)	D503G	probably benign	Het
Pcdhb12	C	T	18: 37,436,671 (GRCm38)	T290I	probably damaging	Het
Pde6b	C	A	5: 108,388,691 (GRCm38)	C84*	probably null	Het
Pex1	A	T	5: 3,630,044 (GRCm38)	N914I	probably damaging	Het
Pign	A	G	1: 105,589,317 (GRCm38)	V528A	possibly damaging	Het
Pkhd1	T	G	1: 20,533,905 (GRCm38)	D1187A	possibly damaging	Het
Ppip5k1	T	C	2: 121,342,631 (GRCm38)	K489E	probably damaging	Het
Prob1	T	C	18: 35,653,252 (GRCm38)	T650A	possibly damaging	Het
Radil	T	C	5: 142,495,336 (GRCm38)	Y572C	probably damaging	Het
Rapgef2	A	G	3: 79,088,791 (GRCm38)	I555T	possibly damaging	Het
Rgs5	G	A	1: 169,682,817 (GRCm38)		probably null	Het
Rnaset2b	G	A	17: 6,981,107 (GRCm38)		probably null	Het
S1pr1	A	G	3: 115,711,938 (GRCm38)	S336P	probably benign	Het
Slc34a2	A	T	5: 53,061,391 (GRCm38)	I184F	probably benign	Het
Slc35a3	A	G	3: 116,677,948 (GRCm38)	V224A	possibly damaging	Het
Slc39a9	A	G	12: 80,677,202 (GRCm38)	H211R	probably damaging	Het
Slu7	A	G	11: 43,439,268 (GRCm38)	N174S	probably benign	Het
Smarcd3	A	T	5: 24,595,822 (GRCm38)	Y131*	probably null	Het
Syne1	A	G	10: 5,367,621 (GRCm38)	M491T	probably benign	Het
Tars	G	A	15: 11,394,243 (GRCm38)	Q103*	probably null	Het
Tmem132d	C	A	5: 127,789,855 (GRCm38)	E660D	probably benign	Het
Ttn	T	A	2: 76,752,261 (GRCm38)	M22763L	probably benign	Het
Ttn	T	C	2: 76,812,972 (GRCm38)	E13201G	probably damaging	Het
Ttn	T	C	2: 76,745,043 (GRCm38)	T16842A	probably damaging	Het
Ubp1	A	T	9: 113,955,969 (GRCm38)	I117L	possibly damaging	Het
Usp24	T	A	4: 106,377,559 (GRCm38)	H954Q	probably benign	Het
Vmn1r174	G	A	7: 23,754,197 (GRCm38)	R96H	probably benign	Het
Vmn2r63	G	A	7: 42,928,245 (GRCm38)	Q290*	probably null	Het
Vnn3	T	C	10: 23,865,820 (GRCm38)	I341T	probably benign	Het
Wbp2nl	A	G	15: 82,305,744 (GRCm38)	T46A	probably damaging	Het
Wdr48	G	T	9: 119,924,247 (GRCm38)	E625*	probably null	Het
Wdr6	C	T	9: 108,575,164 (GRCm38)	V507I	probably damaging	Het
Zp2	A	T	7: 120,138,105 (GRCm38)	W287R	probably benign	Het

Other mutations in Slc24a5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00776:Slc24a5	APN	2	125,080,889 (GRCm38)	missense	probably damaging	1.00
IGL01307:Slc24a5	APN	2	125,080,880 (GRCm38)	missense	probably damaging	1.00
IGL01926:Slc24a5	APN	2	125,068,903 (GRCm38)	missense	probably benign	0.01
IGL02090:Slc24a5	APN	2	125,068,298 (GRCm38)	missense	probably benign	0.25
IGL02313:Slc24a5	APN	2	125,085,647 (GRCm38)	unclassified	probably benign
IGL02328:Slc24a5	APN	2	125,080,639 (GRCm38)	missense	probably damaging	1.00
IGL02743:Slc24a5	APN	2	125,088,234 (GRCm38)	missense	probably damaging	1.00
IGL02969:Slc24a5	APN	2	125,083,227 (GRCm38)	missense	probably damaging	1.00
IGL03212:Slc24a5	APN	2	125,080,830 (GRCm38)	missense	probably damaging	1.00
IGL03258:Slc24a5	APN	2	125,080,705 (GRCm38)	critical splice donor site	probably null
Scarce	UTSW	2	125,080,648 (GRCm38)	missense	probably damaging	1.00
R0344:Slc24a5	UTSW	2	125,085,701 (GRCm38)	missense	probably benign	0.03
R0811:Slc24a5	UTSW	2	125,068,804 (GRCm38)	missense	probably damaging	0.98
R0812:Slc24a5	UTSW	2	125,068,804 (GRCm38)	missense	probably damaging	0.98
R1018:Slc24a5	UTSW	2	125,068,907 (GRCm38)	missense	probably damaging	1.00
R1574:Slc24a5	UTSW	2	125,080,862 (GRCm38)	missense	probably damaging	0.96
R1574:Slc24a5	UTSW	2	125,080,862 (GRCm38)	missense	probably damaging	0.96
R2147:Slc24a5	UTSW	2	125,087,441 (GRCm38)	missense	probably damaging	1.00
R4934:Slc24a5	UTSW	2	125,088,020 (GRCm38)	missense	probably damaging	1.00
R4964:Slc24a5	UTSW	2	125,068,268 (GRCm38)	missense	probably benign	0.20
R4966:Slc24a5	UTSW	2	125,068,268 (GRCm38)	missense	probably benign	0.20
R5225:Slc24a5	UTSW	2	125,085,819 (GRCm38)	missense	probably damaging	0.99
R5275:Slc24a5	UTSW	2	125,085,861 (GRCm38)	missense	probably benign	0.09
R5438:Slc24a5	UTSW	2	125,068,865 (GRCm38)	missense	probably damaging	1.00
R5866:Slc24a5	UTSW	2	125,085,671 (GRCm38)	missense	probably damaging	1.00
R6038:Slc24a5	UTSW	2	125,085,731 (GRCm38)	missense	probably benign	0.04
R6038:Slc24a5	UTSW	2	125,085,731 (GRCm38)	missense	probably benign	0.04
R6114:Slc24a5	UTSW	2	125,083,092 (GRCm38)	missense	probably benign	0.01
R6211:Slc24a5	UTSW	2	125,088,251 (GRCm38)	missense	probably benign	0.23
R6516:Slc24a5	UTSW	2	125,088,107 (GRCm38)	missense	probably benign	0.01
R6675:Slc24a5	UTSW	2	125,080,695 (GRCm38)	missense	possibly damaging	0.82
R6677:Slc24a5	UTSW	2	125,080,695 (GRCm38)	missense	possibly damaging	0.82
R6826:Slc24a5	UTSW	2	125,068,858 (GRCm38)	missense	probably benign	0.00
R7100:Slc24a5	UTSW	2	125,080,671 (GRCm38)	missense	probably damaging	1.00
R7122:Slc24a5	UTSW	2	125,088,191 (GRCm38)	missense	probably benign	0.15
R7381:Slc24a5	UTSW	2	125,068,949 (GRCm38)	missense	probably benign	0.29
R7398:Slc24a5	UTSW	2	125,085,774 (GRCm38)	nonsense	probably null
R7401:Slc24a5	UTSW	2	125,088,191 (GRCm38)	missense	probably benign	0.15
R8219:Slc24a5	UTSW	2	125,085,655 (GRCm38)	critical splice acceptor site	probably null
R9227:Slc24a5	UTSW	2	125,080,648 (GRCm38)	missense	probably damaging	1.00
R9230:Slc24a5	UTSW	2	125,080,648 (GRCm38)	missense	probably damaging	1.00
X0067:Slc24a5	UTSW	2	125,087,503 (GRCm38)	missense	possibly damaging	0.95

Predicted Primers

PCR Primer
(F):5'- TTCCTCCACGTCTAGGTACGAAGG -3'
(R):5'- GGCCAGGACTTACTTGCAGTTCATC -3'

Sequencing Primer
(F):5'- AGGAGCAGGGCTGCTAC -3'
(R):5'- TACTAACTCTCAATGAGAACTCAGG -3'

Posted On

2014-05-23