Mutagenetix > Incidental Mutation

Incidental Mutation 'R1754:Atp6v1b2'

193845

Institutional Source

Beutler Lab

Gene Symbol

Atp6v1b2

Ensembl Gene

ENSMUSG00000006273

Gene Name

ATPase, H+ transporting, lysosomal V1 subunit B2

Synonyms

Atp6b2, HO57

MMRRC Submission

039786-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R1754 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

69088646-69113711 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 69101961 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 106 (D106G)

Ref Sequence

ENSEMBL: ENSMUSP00000006435 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000006435]

AlphaFold

P62814

Predicted Effect

probably benign
Transcript: ENSMUST00000006435
AA Change: D106G

PolyPhen 2 Score 0.251 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000006435
Gene: ENSMUSG00000006273
AA Change: D106G

Domain	Start	End	E-Value	Type
Pfam:ATP-synt_ab_N	50	116	3.2e-14	PFAM
Pfam:ATP-synt_ab	173	399	1.9e-69	PFAM
Pfam:ATP-synt_ab_C	416	510	5.1e-18	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000123290

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000129797

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000153079

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000153680

Coding Region Coverage

1x: 97.5%
3x: 97.0%
10x: 95.6%
20x: 93.3%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a component of vacuolar ATPase (V-ATPase), a multisubunit enzyme that mediates acidification of eukaryotic intracellular organelles. V-ATPase dependent organelle acidification is necessary for such intracellular processes as protein sorting, zymogen activation, receptor-mediated endocytosis, and synaptic vesicle proton gradient generation. V-ATPase is composed of a cytosolic V1 domain and a transmembrane V0 domain. The V1 domain consists of three A, three B, and two G subunits, as well as a C, D, E, F, and H subunit. The V1 domain contains the ATP catalytic site. The protein encoded by this gene is one of two V1 domain B subunit isoforms and is the only B isoform highly expressed in osteoclasts. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 87 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930563D23Rik	A	G	16: 92,321,031 (GRCm38)	V123A	probably damaging	Het
Abca2	T	A	2: 25,434,333 (GRCm38)	L234M	probably benign	Het
Abca3	G	A	17: 24,377,779 (GRCm38)	S402N	probably benign	Het
Acad12	A	T	5: 121,607,481 (GRCm38)	V249D	probably benign	Het
Acp4	T	C	7: 44,255,004 (GRCm38)	I212V	probably benign	Het
Actl6a	T	A	3: 32,718,574 (GRCm38)	V233D	probably damaging	Het
Aire	T	A	10: 78,030,290 (GRCm38)	Q533L	probably damaging	Het
Aldh3b3	T	C	19: 3,968,517 (GRCm38)	S411P	probably benign	Het
Amer2	A	G	14: 60,379,757 (GRCm38)	K467R	probably damaging	Het
Apol9b	A	T	15: 77,735,762 (GRCm38)	I253F	probably benign	Het
Arid1b	A	G	17: 5,279,201 (GRCm38)		probably null	Het
Atp6v0a4	T	C	6: 38,067,829 (GRCm38)	T494A	probably benign	Het
Avpr1b	T	C	1: 131,600,101 (GRCm38)	S121P	probably damaging	Het
Bcl11a	A	C	11: 24,164,724 (GRCm38)	E689A	probably damaging	Het
Brpf3	T	G	17: 28,821,323 (GRCm38)	L906R	probably benign	Het
Btn1a1	T	C	13: 23,460,468 (GRCm38)	K287E	probably benign	Het
Cacna1i	A	G	15: 80,371,529 (GRCm38)	H871R	probably damaging	Het
Cd14	A	T	18: 36,725,514 (GRCm38)	L296Q	probably damaging	Het
Col1a2	G	A	6: 4,518,822 (GRCm38)		probably benign	Het
Colgalt1	G	T	8: 71,623,179 (GRCm38)	W490L	probably damaging	Het
Ctnna2	A	G	6: 77,636,749 (GRCm38)	I273T	possibly damaging	Het
Dnah7a	A	T	1: 53,504,185 (GRCm38)	D2275E	probably benign	Het
Dnah7a	A	C	1: 53,561,900 (GRCm38)		probably null	Het
Egfem1	T	C	3: 29,668,333 (GRCm38)	Y404H	possibly damaging	Het
Esm1	A	T	13: 113,216,696 (GRCm38)	N171Y	probably damaging	Het
Exoc1	T	G	5: 76,560,322 (GRCm38)		probably null	Het
Fcho1	A	G	8: 71,711,246 (GRCm38)	I580T	probably benign	Het
Fgfr1	A	G	8: 25,570,210 (GRCm38)	H552R	probably damaging	Het
Fsbp	A	G	4: 11,583,906 (GRCm38)	R202G	probably damaging	Het
Gabra6	A	G	11: 42,316,561 (GRCm38)	V231A	probably damaging	Het
Gm8765	A	T	13: 50,701,087 (GRCm38)	T254S	probably damaging	Het
Gmeb1	A	G	4: 132,232,027 (GRCm38)	S239P	probably benign	Het
Gnpat	T	A	8: 124,877,006 (GRCm38)	Y208N	probably damaging	Het
Il21	T	C	3: 37,225,525 (GRCm38)	K114R	possibly damaging	Het
Inhbc	T	C	10: 127,370,293 (GRCm38)	D35G	possibly damaging	Het
Inpp4b	A	T	8: 81,770,811 (GRCm38)	T87S	probably damaging	Het
Kcns2	T	C	15: 34,839,517 (GRCm38)	I342T	possibly damaging	Het
Ky	A	T	9: 102,541,927 (GRCm38)	T378S	possibly damaging	Het
Lcat	CAT	C	8: 105,941,814 (GRCm38)		probably null	Het
Lrrc8d	T	C	5: 105,812,657 (GRCm38)	V311A	probably benign	Het
Mief1	A	G	15: 80,249,602 (GRCm38)	I287V	probably damaging	Het
Mrpl47	A	G	3: 32,730,084 (GRCm38)	V179A	probably benign	Het
Mtcl1	T	C	17: 66,380,183 (GRCm38)	K576R	probably damaging	Het
Myh10	C	A	11: 68,813,058 (GRCm38)	A1902E	probably damaging	Het
Nlrp3	A	G	11: 59,558,402 (GRCm38)	T837A	possibly damaging	Het
Nr1i3	T	C	1: 171,217,394 (GRCm38)	Y132H	probably damaging	Het
Oit3	T	C	10: 59,427,940 (GRCm38)		probably null	Het
Olfr1186	A	T	2: 88,525,815 (GRCm38)	R77S	probably damaging	Het
Olfr1467	T	C	19: 13,365,353 (GRCm38)	S242P	probably damaging	Het
Olfr193	T	A	16: 59,110,581 (GRCm38)	I10F	probably benign	Het
Olfr30	A	T	11: 58,455,262 (GRCm38)	M229K	probably damaging	Het
Olfr427	A	G	1: 174,100,033 (GRCm38)	T192A	probably benign	Het
Olfr533	A	T	7: 140,466,860 (GRCm38)	I220F	probably damaging	Het
Olfr8	T	A	10: 78,955,697 (GRCm38)	V164E	probably damaging	Het
Olfr825	G	A	10: 130,163,164 (GRCm38)	T54I	probably benign	Het
Pdlim4	T	C	11: 54,055,873 (GRCm38)	E196G	possibly damaging	Het
Pigs	A	G	11: 78,337,847 (GRCm38)	Y293C	probably damaging	Het
Pkd1l2	A	T	8: 117,030,719 (GRCm38)	S1527T	possibly damaging	Het
Pkd2l1	A	T	19: 44,155,601 (GRCm38)	Y344*	probably null	Het
Pmp2	T	C	3: 10,182,224 (GRCm38)		probably null	Het
Polr3e	T	C	7: 120,939,298 (GRCm38)		probably null	Het
Ppp3ca	C	G	3: 136,881,448 (GRCm38)	I230M	probably benign	Het
Ppp5c	T	C	7: 17,005,310 (GRCm38)	H463R	probably benign	Het
Ptger1	A	G	8: 83,669,297 (GRCm38)	N328D	probably benign	Het
Rhno1	A	T	6: 128,357,859 (GRCm38)	I167N	probably benign	Het
Rictor	C	A	15: 6,735,368 (GRCm38)	P34H	probably damaging	Het
Rnf10	A	C	5: 115,245,865 (GRCm38)	S630R	probably damaging	Het
Rnf168	A	G	16: 32,299,124 (GRCm38)	Q501R	probably benign	Het
Rngtt	T	G	4: 33,329,634 (GRCm38)		probably null	Het
Samd9l	G	T	6: 3,373,126 (GRCm38)	F1378L	probably damaging	Het
Slc9c1	T	A	16: 45,589,509 (GRCm38)	M864K	probably benign	Het
Slitrk5	T	C	14: 111,680,519 (GRCm38)	F525S	probably damaging	Het
Sox6	T	C	7: 115,477,055 (GRCm38)	M784V	probably benign	Het
Spint2	C	T	7: 29,260,366 (GRCm38)		probably null	Het
Ssh1	A	T	5: 113,955,845 (GRCm38)	I276N	probably damaging	Het
Trank1	T	A	9: 111,392,871 (GRCm38)	V2892D	probably benign	Het
Ttn	C	A	2: 76,751,040 (GRCm38)	E21424*	probably null	Het
Usp17lc	T	C	7: 103,418,848 (GRCm38)	I450T	probably benign	Het
Vcan	A	G	13: 89,704,735 (GRCm38)	V702A	probably benign	Het
Vmn1r36	TA	TAA	6: 66,716,533 (GRCm38)		probably null	Het
Vmn2r51	G	T	7: 10,099,946 (GRCm38)	D388E	probably benign	Het
Zfp106	A	C	2: 120,533,764 (GRCm38)	S721A	probably damaging	Het
Zfp106	G	A	2: 120,533,763 (GRCm38)	S721L	probably damaging	Het
Zfp189	T	A	4: 49,529,342 (GRCm38)	H148Q	possibly damaging	Het
Zfp352	A	T	4: 90,223,809 (GRCm38)	Y62F	probably benign	Het
Zfp839	T	C	12: 110,855,457 (GRCm38)	V235A	probably damaging	Het
Zfp871	T	C	17: 32,775,334 (GRCm38)	Y289C	probably damaging	Het

Other mutations in Atp6v1b2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00331:Atp6v1b2	APN	8	69,088,934 (GRCm38)	splice site	probably null
IGL00908:Atp6v1b2	APN	8	69,096,266 (GRCm38)	missense	probably benign	0.00
IGL01914:Atp6v1b2	APN	8	69,096,280 (GRCm38)	splice site	probably benign
IGL03010:Atp6v1b2	APN	8	69,105,882 (GRCm38)	missense	probably damaging	0.97
IGL03376:Atp6v1b2	APN	8	69,102,159 (GRCm38)	splice site	probably benign
R0127:Atp6v1b2	UTSW	8	69,103,460 (GRCm38)	missense	probably damaging	1.00
R0427:Atp6v1b2	UTSW	8	69,101,432 (GRCm38)	missense	probably damaging	1.00
R0523:Atp6v1b2	UTSW	8	69,109,985 (GRCm38)	missense	possibly damaging	0.52
R1932:Atp6v1b2	UTSW	8	69,102,807 (GRCm38)	nonsense	probably null
R1954:Atp6v1b2	UTSW	8	69,105,903 (GRCm38)	missense	possibly damaging	0.95
R2228:Atp6v1b2	UTSW	8	69,102,759 (GRCm38)	splice site	probably null
R2229:Atp6v1b2	UTSW	8	69,102,759 (GRCm38)	splice site	probably null
R4448:Atp6v1b2	UTSW	8	69,102,022 (GRCm38)	missense	probably benign
R4738:Atp6v1b2	UTSW	8	69,103,410 (GRCm38)	missense	probably benign
R5243:Atp6v1b2	UTSW	8	69,103,739 (GRCm38)	missense	probably benign	0.07
R5388:Atp6v1b2	UTSW	8	69,101,437 (GRCm38)	missense	probably benign	0.00
R5664:Atp6v1b2	UTSW	8	69,107,620 (GRCm38)	missense	probably damaging	0.99
R5774:Atp6v1b2	UTSW	8	69,101,961 (GRCm38)	missense	probably damaging	0.97
R5894:Atp6v1b2	UTSW	8	69,107,566 (GRCm38)	splice site	probably null
R6015:Atp6v1b2	UTSW	8	69,102,496 (GRCm38)	missense	probably damaging	1.00
R6147:Atp6v1b2	UTSW	8	69,102,482 (GRCm38)	nonsense	probably null
R6217:Atp6v1b2	UTSW	8	69,109,878 (GRCm38)	critical splice acceptor site	probably null
R6636:Atp6v1b2	UTSW	8	69,101,374 (GRCm38)	missense	probably damaging	1.00
R6637:Atp6v1b2	UTSW	8	69,101,374 (GRCm38)	missense	probably damaging	1.00
R7032:Atp6v1b2	UTSW	8	69,088,896 (GRCm38)	missense	probably benign	0.44
R7108:Atp6v1b2	UTSW	8	69,102,501 (GRCm38)	missense	probably damaging	1.00
R7184:Atp6v1b2	UTSW	8	69,102,567 (GRCm38)	missense	possibly damaging	0.55
R7578:Atp6v1b2	UTSW	8	69,103,476 (GRCm38)	missense	probably benign	0.01
R8168:Atp6v1b2	UTSW	8	69,108,331 (GRCm38)	missense	possibly damaging	0.93
R8342:Atp6v1b2	UTSW	8	69,101,383 (GRCm38)	missense	probably benign	0.00
R8380:Atp6v1b2	UTSW	8	69,103,390 (GRCm38)	missense	probably damaging	1.00
R8961:Atp6v1b2	UTSW	8	69,102,762 (GRCm38)	missense	probably benign	0.01
R9100:Atp6v1b2	UTSW	8	69,088,824 (GRCm38)	missense

Predicted Primers

PCR Primer
(F):5'- AAAGCCCATCGTTCCGTGACAG -3'
(R):5'- TCAAGGAAGTCTTCAGCCAGCACC -3'

Sequencing Primer
(F):5'- ATCGTTCCGTGACAGGACAG -3'
(R):5'- GATCCGTTGAATACTCGACCTATAC -3'

Posted On

2014-05-23