Mutagenetix > Incidental Mutation

Incidental Mutation 'R1745:Arfgef1'

193901

Institutional Source

Beutler Lab

Gene Symbol

Arfgef1

Ensembl Gene

ENSMUSG00000067851

Gene Name

ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)

Synonyms

P200, ARFGEP1, BIG1, D130059B05Rik, D730028O18Rik

MMRRC Submission

039777-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R1745 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

10137571-10232670 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 10173255 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Arginine at position 1023 (I1023R)

Ref Sequence

ENSEMBL: ENSMUSP00000085986 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000088615] [ENSMUST00000131556]

AlphaFold

G3X9K3

Predicted Effect

probably damaging
Transcript: ENSMUST00000088615
AA Change: I1023R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000085986
Gene: ENSMUSG00000067851
AA Change: I1023R

Domain	Start	End	E-Value	Type
Pfam:DCB	28	213	5.2e-45	PFAM
low complexity region	221	233	N/A	INTRINSIC
low complexity region	291	306	N/A	INTRINSIC
Pfam:Sec7_N	416	575	1.3e-52	PFAM
Blast:Sec7	588	637	6e-24	BLAST
low complexity region	661	681	N/A	INTRINSIC
Sec7	692	879	1.15e-105	SMART
Blast:Sec7	897	933	6e-13	BLAST
Blast:Sec7	947	986	8e-18	BLAST
Pfam:DUF1981	1217	1300	3.6e-39	PFAM
low complexity region	1587	1602	N/A	INTRINSIC
low complexity region	1777	1782	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000131556
AA Change: I1023R

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000118805
Gene: ENSMUSG00000067851
AA Change: I1023R

Domain	Start	End	E-Value	Type
coiled coil region	207	234	N/A	INTRINSIC
low complexity region	291	306	N/A	INTRINSIC
Pfam:Sec7_N	413	576	3.1e-59	PFAM
Blast:Sec7	588	637	2e-24	BLAST
low complexity region	661	681	N/A	INTRINSIC
Sec7	692	879	1.15e-105	SMART
Blast:Sec7	897	933	3e-13	BLAST
Blast:Sec7	947	986	2e-18	BLAST

Meta Mutation Damage Score

0.8231

Coding Region Coverage

1x: 97.4%
3x: 96.9%
10x: 95.3%
20x: 92.5%

Validation Efficiency

98% (54/55)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] ADP-ribosylation factors (ARFs) play an important role in intracellular vesicular trafficking. The protein encoded by this gene is involved in the activation of ARFs by accelerating replacement of bound GDP with GTP. It contains a Sec7 domain, which may be responsible for guanine-nucleotide exchange activity and also brefeldin A inhibition. [provided by RefSeq, Aug 2011]
PHENOTYPE: Mice homozygous for a null allele exhibit neonatal lethality, absent gastric milk and decreased brain size with increased neuron apoptosis, abnormal axon guidance and hypersensitivity to glutamate. [provided by MGI curators]

Allele List at MGI

All alleles(10) : Gene trapped(10)

Other mutations in this stock

Total: 53 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4931440F15Rik	A	G	11: 29,824,723 (GRCm38)	S245P	probably benign	Het
Abcc10	A	T	17: 46,312,433 (GRCm38)	V851E	probably benign	Het
Adam28	A	G	14: 68,633,171 (GRCm38)	I351T	probably benign	Het
Agrp	G	T	8: 105,566,835 (GRCm38)	T106K	probably damaging	Het
Anpep	C	T	7: 79,838,256 (GRCm38)	E518K	probably benign	Het
Ap2a1	T	C	7: 44,906,945 (GRCm38)	E285G	probably damaging	Het
Atp2c2	G	A	8: 119,725,094 (GRCm38)	V133I	probably benign	Het
Bpifb6	A	G	2: 153,911,483 (GRCm38)	T401A	possibly damaging	Het
Capn3	G	A	2: 120,489,689 (GRCm38)	V283M	possibly damaging	Het
Chd6	A	T	2: 160,981,667 (GRCm38)	V1261E	probably damaging	Het
Col22a1	C	T	15: 72,006,787 (GRCm38)	A174T	probably damaging	Het
Crnn	T	C	3: 93,146,891 (GRCm38)	V27A	probably benign	Het
Dclk2	C	T	3: 86,805,639 (GRCm38)	R503Q	possibly damaging	Het
Dgkd	T	C	1: 87,932,044 (GRCm38)		probably null	Het
Diaph3	A	G	14: 86,966,560 (GRCm38)	L554P	probably damaging	Het
Ephb4	A	T	5: 137,360,434 (GRCm38)	H293L	probably benign	Het
Erbin	G	T	13: 103,839,449 (GRCm38)	H646N	probably damaging	Het
Faiml	T	C	9: 99,234,458 (GRCm38)	N60D	probably benign	Het
Flot1	A	G	17: 35,824,660 (GRCm38)	E102G	probably damaging	Het
Fryl	G	A	5: 73,032,861 (GRCm38)		probably benign	Het
Gad1-ps	A	T	10: 99,445,524 (GRCm38)		noncoding transcript	Het
Gtf3c3	A	G	1: 54,434,212 (GRCm38)	S81P	probably damaging	Het
Hs1bp3	C	T	12: 8,321,690 (GRCm38)	Q91*	probably null	Het
Igf1r	T	C	7: 68,169,913 (GRCm38)	C324R	probably damaging	Het
Il23r	G	A	6: 67,466,291 (GRCm38)	T276I	probably damaging	Het
Ip6k1	G	A	9: 108,040,996 (GRCm38)	E77K	possibly damaging	Het
Kctd1	A	T	18: 15,063,206 (GRCm38)		probably benign	Het
Kmt2b	A	T	7: 30,585,850 (GRCm38)	M539K	possibly damaging	Het
Man2b1	T	A	8: 85,093,934 (GRCm38)	F617I	probably damaging	Het
Med15	G	A	16: 17,655,706 (GRCm38)		probably benign	Het
Myo9b	A	G	8: 71,354,047 (GRCm38)	K1543R	probably damaging	Het
N4bp2	A	G	5: 65,790,822 (GRCm38)	Y265C	probably benign	Het
N4bp2l2	A	T	5: 150,661,959 (GRCm38)	N185K	probably benign	Het
Nkx2-1	A	G	12: 56,533,744 (GRCm38)	M137T	probably benign	Het
Olfr638	A	G	7: 104,004,063 (GRCm38)	T269A	probably benign	Het
Prickle2	A	T	6: 92,376,593 (GRCm38)	Y631N	probably damaging	Het
Ptpro	A	G	6: 137,400,645 (GRCm38)	T698A	probably benign	Het
Rapgef3	T	C	15: 97,750,178 (GRCm38)	I690V	probably benign	Het
Rnf44	G	A	13: 54,682,192 (GRCm38)	R271W	probably damaging	Het
Rundc3a	GAGCC	GAGCCAGCC	11: 102,400,913 (GRCm38)		probably null	Het
Ryr2	A	G	13: 11,790,267 (GRCm38)	Y904H	probably damaging	Het
Suz12	T	C	11: 80,022,096 (GRCm38)	L322P	probably damaging	Het
Tnfsf13	G	A	11: 69,685,147 (GRCm38)	A38V	probably benign	Het
Topbp1	G	A	9: 103,308,845 (GRCm38)	R62H	probably benign	Het
Tor1aip1	G	T	1: 156,030,434 (GRCm38)		probably null	Het
Trpv4	A	T	5: 114,633,154 (GRCm38)	V438E	probably damaging	Het
Tsku	A	T	7: 98,352,179 (GRCm38)	V315E	possibly damaging	Het
Ttc38	T	C	15: 85,833,172 (GRCm38)	L16P	probably damaging	Het
Vmn1r170	A	G	7: 23,606,334 (GRCm38)	I54V	probably damaging	Het
Vmn1r71	T	C	7: 10,748,269 (GRCm38)	D98G	probably benign	Het
Wdfy3	A	T	5: 101,948,929 (GRCm38)	D334E	probably damaging	Het
Zfhx3	T	A	8: 108,955,862 (GRCm38)	F3311Y	unknown	Het
Zswim9	A	G	7: 13,269,556 (GRCm38)	S123P	probably damaging	Het

Other mutations in Arfgef1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00766:Arfgef1	APN	1	10,199,787 (GRCm38)	missense	probably benign
IGL00919:Arfgef1	APN	1	10,173,237 (GRCm38)	missense	probably damaging	1.00
IGL01022:Arfgef1	APN	1	10,174,076 (GRCm38)	missense	probably damaging	1.00
IGL01155:Arfgef1	APN	1	10,198,982 (GRCm38)	splice site	probably benign
IGL01288:Arfgef1	APN	1	10,213,211 (GRCm38)	missense	possibly damaging	0.67
IGL01397:Arfgef1	APN	1	10,159,571 (GRCm38)	missense	probably benign	0.40
IGL01433:Arfgef1	APN	1	10,153,432 (GRCm38)	missense	probably damaging	1.00
IGL01653:Arfgef1	APN	1	10,159,908 (GRCm38)	nonsense	probably null
IGL01669:Arfgef1	APN	1	10,159,615 (GRCm38)	missense	probably damaging	1.00
IGL01795:Arfgef1	APN	1	10,147,528 (GRCm38)	missense	probably benign	0.01
IGL01860:Arfgef1	APN	1	10,154,396 (GRCm38)	missense	probably damaging	1.00
IGL02137:Arfgef1	APN	1	10,213,113 (GRCm38)	missense	probably damaging	1.00
IGL02365:Arfgef1	APN	1	10,199,883 (GRCm38)	missense	probably benign	0.00
IGL02519:Arfgef1	APN	1	10,209,668 (GRCm38)	missense	probably benign	0.13
IGL02542:Arfgef1	APN	1	10,172,842 (GRCm38)	missense	probably benign	0.24
IGL02604:Arfgef1	APN	1	10,181,050 (GRCm38)	splice site	probably benign
IGL02743:Arfgef1	APN	1	10,199,829 (GRCm38)	missense	probably benign	0.00
IGL03225:Arfgef1	APN	1	10,154,318 (GRCm38)	missense	probably damaging	1.00
Collected	UTSW	1	10,180,938 (GRCm38)	missense	probably damaging	1.00
uncle_joe	UTSW	1	10,160,835 (GRCm38)	missense	probably damaging	1.00
G1Funyon:Arfgef1	UTSW	1	10,179,833 (GRCm38)	missense	probably damaging	1.00
I2288:Arfgef1	UTSW	1	10,173,253 (GRCm38)	missense	probably damaging	1.00
I2289:Arfgef1	UTSW	1	10,173,253 (GRCm38)	missense	probably damaging	1.00
R0383:Arfgef1	UTSW	1	10,198,842 (GRCm38)	critical splice donor site	probably null
R0491:Arfgef1	UTSW	1	10,179,987 (GRCm38)	splice site	probably benign
R0636:Arfgef1	UTSW	1	10,199,851 (GRCm38)	missense	probably benign
R1006:Arfgef1	UTSW	1	10,140,481 (GRCm38)	missense	probably benign	0.00
R1212:Arfgef1	UTSW	1	10,216,559 (GRCm38)	missense	probably benign	0.05
R1233:Arfgef1	UTSW	1	10,184,090 (GRCm38)	missense	probably damaging	1.00
R1346:Arfgef1	UTSW	1	10,159,733 (GRCm38)	missense	probably benign	0.41
R1416:Arfgef1	UTSW	1	10,172,939 (GRCm38)	missense	probably damaging	1.00
R1477:Arfgef1	UTSW	1	10,189,284 (GRCm38)	missense	probably damaging	1.00
R1581:Arfgef1	UTSW	1	10,199,878 (GRCm38)	missense	probably benign	0.02
R1587:Arfgef1	UTSW	1	10,159,959 (GRCm38)	missense	probably damaging	0.99
R1602:Arfgef1	UTSW	1	10,204,890 (GRCm38)	missense	probably benign	0.01
R1831:Arfgef1	UTSW	1	10,204,890 (GRCm38)	missense	probably benign	0.01
R1832:Arfgef1	UTSW	1	10,204,890 (GRCm38)	missense	probably benign	0.01
R1833:Arfgef1	UTSW	1	10,204,890 (GRCm38)	missense	probably benign	0.01
R1918:Arfgef1	UTSW	1	10,199,878 (GRCm38)	missense	probably benign	0.02
R1919:Arfgef1	UTSW	1	10,199,878 (GRCm38)	missense	probably benign	0.02
R2059:Arfgef1	UTSW	1	10,188,752 (GRCm38)	splice site	probably null
R2146:Arfgef1	UTSW	1	10,199,878 (GRCm38)	missense	probably benign	0.02
R2148:Arfgef1	UTSW	1	10,199,878 (GRCm38)	missense	probably benign	0.02
R2149:Arfgef1	UTSW	1	10,199,878 (GRCm38)	missense	probably benign	0.02
R2150:Arfgef1	UTSW	1	10,199,878 (GRCm38)	missense	probably benign	0.02
R2373:Arfgef1	UTSW	1	10,174,142 (GRCm38)	missense	probably damaging	1.00
R2516:Arfgef1	UTSW	1	10,153,654 (GRCm38)	missense	possibly damaging	0.89
R3863:Arfgef1	UTSW	1	10,142,586 (GRCm38)	frame shift	probably null
R3916:Arfgef1	UTSW	1	10,189,443 (GRCm38)	missense	probably benign	0.01
R3948:Arfgef1	UTSW	1	10,142,586 (GRCm38)	frame shift	probably null
R3949:Arfgef1	UTSW	1	10,142,586 (GRCm38)	frame shift	probably null
R3977:Arfgef1	UTSW	1	10,209,634 (GRCm38)	missense	probably benign	0.01
R3978:Arfgef1	UTSW	1	10,209,634 (GRCm38)	missense	probably benign	0.01
R3979:Arfgef1	UTSW	1	10,209,634 (GRCm38)	missense	probably benign	0.01
R4086:Arfgef1	UTSW	1	10,163,759 (GRCm38)	missense	probably benign	0.06
R4175:Arfgef1	UTSW	1	10,159,636 (GRCm38)	missense	probably damaging	1.00
R4257:Arfgef1	UTSW	1	10,159,546 (GRCm38)	intron	probably benign
R4572:Arfgef1	UTSW	1	10,213,141 (GRCm38)	missense	probably damaging	1.00
R4652:Arfgef1	UTSW	1	10,173,262 (GRCm38)	missense	probably damaging	0.98
R4678:Arfgef1	UTSW	1	10,142,666 (GRCm38)	missense	probably benign	0.03
R4737:Arfgef1	UTSW	1	10,189,611 (GRCm38)	missense	possibly damaging	0.85
R4779:Arfgef1	UTSW	1	10,153,733 (GRCm38)	missense	probably damaging	1.00
R4818:Arfgef1	UTSW	1	10,216,547 (GRCm38)	missense	probably benign
R4898:Arfgef1	UTSW	1	10,159,573 (GRCm38)	missense	possibly damaging	0.75
R4979:Arfgef1	UTSW	1	10,213,109 (GRCm38)	missense	probably damaging	1.00
R5039:Arfgef1	UTSW	1	10,199,736 (GRCm38)	missense	probably benign	0.37
R5194:Arfgef1	UTSW	1	10,204,907 (GRCm38)	missense	probably benign	0.09
R5428:Arfgef1	UTSW	1	10,160,835 (GRCm38)	missense	probably damaging	1.00
R5533:Arfgef1	UTSW	1	10,199,727 (GRCm38)	critical splice donor site	probably null
R5547:Arfgef1	UTSW	1	10,160,976 (GRCm38)	missense	probably damaging	1.00
R5562:Arfgef1	UTSW	1	10,144,746 (GRCm38)	missense	probably damaging	1.00
R5635:Arfgef1	UTSW	1	10,188,860 (GRCm38)	missense	possibly damaging	0.81
R5697:Arfgef1	UTSW	1	10,160,838 (GRCm38)	missense	probably benign	0.03
R5704:Arfgef1	UTSW	1	10,159,583 (GRCm38)	missense	probably damaging	0.98
R5722:Arfgef1	UTSW	1	10,138,884 (GRCm38)	missense	probably benign	0.04
R5793:Arfgef1	UTSW	1	10,209,528 (GRCm38)	missense	probably benign	0.01
R5835:Arfgef1	UTSW	1	10,160,739 (GRCm38)	missense	probably damaging	1.00
R5870:Arfgef1	UTSW	1	10,180,938 (GRCm38)	missense	probably damaging	1.00
R5990:Arfgef1	UTSW	1	10,172,921 (GRCm38)	missense	probably damaging	0.99
R6290:Arfgef1	UTSW	1	10,188,811 (GRCm38)	missense	possibly damaging	0.91
R6460:Arfgef1	UTSW	1	10,213,060 (GRCm38)	missense	probably damaging	1.00
R6613:Arfgef1	UTSW	1	10,194,396 (GRCm38)	missense	possibly damaging	0.95
R6802:Arfgef1	UTSW	1	10,189,452 (GRCm38)	missense	probably benign	0.35
R6967:Arfgef1	UTSW	1	10,153,679 (GRCm38)	missense	probably damaging	0.99
R6967:Arfgef1	UTSW	1	10,153,678 (GRCm38)	missense	probably damaging	1.00
R6968:Arfgef1	UTSW	1	10,153,679 (GRCm38)	missense	probably damaging	0.99
R6968:Arfgef1	UTSW	1	10,153,678 (GRCm38)	missense	probably damaging	1.00
R6969:Arfgef1	UTSW	1	10,153,679 (GRCm38)	missense	probably damaging	0.99
R6969:Arfgef1	UTSW	1	10,153,678 (GRCm38)	missense	probably damaging	1.00
R6970:Arfgef1	UTSW	1	10,153,679 (GRCm38)	missense	probably damaging	0.99
R6970:Arfgef1	UTSW	1	10,153,678 (GRCm38)	missense	probably damaging	1.00
R7092:Arfgef1	UTSW	1	10,153,676 (GRCm38)	missense	probably damaging	1.00
R7251:Arfgef1	UTSW	1	10,198,975 (GRCm38)	missense	possibly damaging	0.81
R7334:Arfgef1	UTSW	1	10,184,460 (GRCm38)	missense	probably damaging	1.00
R7399:Arfgef1	UTSW	1	10,180,897 (GRCm38)	missense	probably benign	0.00
R7631:Arfgef1	UTSW	1	10,232,469 (GRCm38)	missense	probably benign	0.00
R7699:Arfgef1	UTSW	1	10,194,411 (GRCm38)	missense	possibly damaging	0.78
R7700:Arfgef1	UTSW	1	10,194,411 (GRCm38)	missense	possibly damaging	0.78
R7772:Arfgef1	UTSW	1	10,157,010 (GRCm38)	missense	possibly damaging	0.96
R7968:Arfgef1	UTSW	1	10,172,920 (GRCm38)	missense	probably damaging	1.00
R8195:Arfgef1	UTSW	1	10,173,253 (GRCm38)	missense	probably damaging	1.00
R8292:Arfgef1	UTSW	1	10,156,969 (GRCm38)	missense	probably benign	0.06
R8301:Arfgef1	UTSW	1	10,179,833 (GRCm38)	missense	probably damaging	1.00
R8341:Arfgef1	UTSW	1	10,154,328 (GRCm38)	missense	probably benign	0.37
R8410:Arfgef1	UTSW	1	10,159,642 (GRCm38)	missense	possibly damaging	0.94
R8411:Arfgef1	UTSW	1	10,216,534 (GRCm38)	missense	probably benign	0.01
R8793:Arfgef1	UTSW	1	10,142,607 (GRCm38)	missense	possibly damaging	0.95
R8903:Arfgef1	UTSW	1	10,141,613 (GRCm38)	missense	probably damaging	1.00
R8955:Arfgef1	UTSW	1	10,199,837 (GRCm38)	missense	probably benign	0.25
R9036:Arfgef1	UTSW	1	10,188,830 (GRCm38)	missense	probably benign	0.01
R9185:Arfgef1	UTSW	1	10,144,779 (GRCm38)	missense	probably damaging	1.00
R9252:Arfgef1	UTSW	1	10,172,897 (GRCm38)	nonsense	probably null
R9333:Arfgef1	UTSW	1	10,151,812 (GRCm38)	nonsense	probably null
R9335:Arfgef1	UTSW	1	10,158,011 (GRCm38)	missense	probably damaging	1.00
R9348:Arfgef1	UTSW	1	10,213,194 (GRCm38)	missense	probably benign	0.03
R9355:Arfgef1	UTSW	1	10,199,775 (GRCm38)	missense	probably benign	0.00
R9564:Arfgef1	UTSW	1	10,147,533 (GRCm38)	missense	probably benign	0.00
R9600:Arfgef1	UTSW	1	10,163,752 (GRCm38)	missense	probably benign	0.01
R9789:Arfgef1	UTSW	1	10,173,202 (GRCm38)	missense	probably damaging	1.00
V1662:Arfgef1	UTSW	1	10,173,253 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCACTTCAGGATCTACAGCACAGAAA -3'
(R):5'- GAATTGTCGGTTCAGGTTGTGTCTAGAA -3'

Sequencing Primer
(F):5'- TCTACAGCACAGAAAGAAAAAAAAAG -3'
(R):5'- AGCGCATAGACAGTTGGTTTAC -3'

Posted On

2014-05-23