Mutagenetix > Incidental Mutation

Incidental Mutation 'R1766:Igsf3'

194346

Institutional Source

Beutler Lab

Gene Symbol

Igsf3

Ensembl Gene

ENSMUSG00000042035

Gene Name

immunoglobulin superfamily, member 3

Synonyms

1700016K10Rik, 2810035F16Rik, 4833439O17Rik

MMRRC Submission

039798-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.250) question?

Stock #

R1766 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

101284399-101370375 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 101338598 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Glutamine at position 304 (L304Q)

Ref Sequence

ENSEMBL: ENSMUSP00000141823 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000043983] [ENSMUST00000195164]

AlphaFold

Q6ZQA6

Predicted Effect

probably damaging
Transcript: ENSMUST00000043983
AA Change: L304Q

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000048900
Gene: ENSMUSG00000042035
AA Change: L304Q

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
IG	27	142	7.7e-5	SMART
IG	152	275	1.99e-7	SMART
IG	287	405	1.79e0	SMART
IG	417	539	6.26e-5	SMART
IG	553	674	3.16e-1	SMART
IG	686	811	4.89e-7	SMART
IG	823	947	8.38e-6	SMART
IG	959	1109	6.97e-3	SMART
transmembrane domain	1125	1147	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000195164
AA Change: L304Q

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000141823
Gene: ENSMUSG00000042035
AA Change: L304Q

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
IG	27	142	3.1e-7	SMART
IG	152	275	8.2e-10	SMART
IG	287	405	7.4e-3	SMART
IG	437	559	2.5e-7	SMART
IG	573	694	1.3e-3	SMART
IG	706	831	1.9e-9	SMART
IG	843	967	3.4e-8	SMART
IG	979	1129	2.9e-5	SMART
transmembrane domain	1145	1167	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000196233

Coding Region Coverage

1x: 97.5%
3x: 96.9%
10x: 95.3%
20x: 92.3%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is an immunoglobulin-like membrane protein containing several V-type Ig-like domains. A mutation in this gene has been associated with bilateral nasolacrimal duct obstruction (LCDD). [provided by RefSeq, Jun 2016]

Allele List at MGI

Other mutations in this stock

Total: 78 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Afg1l	T	C	10: 42,330,491 (GRCm39)	T59A	probably benign	Het
Ankrd17	T	A	5: 90,412,656 (GRCm39)	M1223L	possibly damaging	Het
Ankrd24	G	A	10: 81,474,472 (GRCm39)	S68N	probably benign	Het
Arhgap31	A	G	16: 38,445,952 (GRCm39)	I131T	probably damaging	Het
Arhgef10	A	T	8: 15,029,836 (GRCm39)	I874F	probably damaging	Het
Arl5b	T	C	2: 15,074,648 (GRCm39)	V43A	probably benign	Het
BC051665	G	A	13: 60,932,854 (GRCm39)	H36Y	probably benign	Het
Cdh9	A	G	15: 16,778,392 (GRCm39)	D69G	probably damaging	Het
Chd6	G	A	2: 160,808,559 (GRCm39)	L1552F	probably damaging	Het
Chrd	A	G	16: 20,556,191 (GRCm39)	H584R	probably damaging	Het
Dnhd1	G	A	7: 105,343,179 (GRCm39)	V1508I	possibly damaging	Het
Dpy19l4	C	T	4: 11,303,360 (GRCm39)	G187D	probably damaging	Het
Dync2h1	T	C	9: 7,015,526 (GRCm39)		probably null	Het
Ehbp1l1	A	G	19: 5,766,434 (GRCm39)	V1303A	probably damaging	Het
Eif4e1b	G	A	13: 54,934,704 (GRCm39)	E182K	probably damaging	Het
Fam170b	A	T	14: 32,557,843 (GRCm39)	Q226L	possibly damaging	Het
Fam193a	C	T	5: 34,619,475 (GRCm39)	P760L	probably damaging	Het
Gabra5	A	T	7: 57,157,796 (GRCm39)	L6H	probably benign	Het
Gabrq	G	A	X: 71,876,989 (GRCm39)	R161H	probably damaging	Het
Gm10608	CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	9: 118,989,784 (GRCm39)		probably null	Het
Gm7334	T	A	17: 51,006,006 (GRCm39)	D97E	probably damaging	Het
Gpsm1	G	A	2: 26,215,395 (GRCm39)	A286T	probably damaging	Het
Gsta4	C	A	9: 78,111,611 (GRCm39)	Y79*	probably null	Het
Hcn1	T	A	13: 117,793,270 (GRCm39)	V174D	probably benign	Het
Hic1	G	T	11: 75,056,620 (GRCm39)	C756*	probably null	Het
Hivep3	C	T	4: 119,953,868 (GRCm39)	T728I	probably benign	Het
Ice1	T	C	13: 70,752,561 (GRCm39)	E1175G	possibly damaging	Het
Kpna6	T	C	4: 129,551,235 (GRCm39)	D90G	probably benign	Het
Krt73	C	T	15: 101,702,363 (GRCm39)	G500D	probably damaging	Het
Lama3	A	G	18: 12,535,119 (GRCm39)	K156E	probably damaging	Het
Mdm2	T	C	10: 117,531,927 (GRCm39)	K94E	probably damaging	Het
Mitf	T	C	6: 97,918,060 (GRCm39)	S26P	probably damaging	Het
Myh4	C	A	11: 67,147,121 (GRCm39)	Q1589K	possibly damaging	Het
Nlrp4c	T	A	7: 6,076,113 (GRCm39)	V671E	probably benign	Het
Nop9	C	T	14: 55,989,591 (GRCm39)	A407V	possibly damaging	Het
Nrap	T	A	19: 56,323,474 (GRCm39)	H1366L	probably damaging	Het
Ntrk1	A	T	3: 87,685,825 (GRCm39)	C766S	probably damaging	Het
Oog3	C	T	4: 143,885,692 (GRCm39)	G302D	possibly damaging	Het
Or4q3	T	C	14: 50,583,677 (GRCm39)	Y43C	probably damaging	Het
Or52z15	A	G	7: 103,332,068 (GRCm39)	N38D	possibly damaging	Het
Or6c38	T	C	10: 128,929,616 (GRCm39)	I76V	probably benign	Het
Or7g27	A	G	9: 19,250,154 (GRCm39)	T133A	probably benign	Het
Pdzph1	C	T	17: 59,280,747 (GRCm39)	V512I	probably benign	Het
Phf2	A	C	13: 48,973,033 (GRCm39)	S408A	unknown	Het
Pigk	T	G	3: 152,445,793 (GRCm39)	L135V	probably damaging	Het
Ppp2ca	C	A	11: 52,012,773 (GRCm39)	T301N	probably benign	Het
Ppp4r3a	A	G	12: 101,024,741 (GRCm39)	S253P	probably damaging	Het
Ptgfrn	A	T	3: 100,957,438 (GRCm39)	I712N	probably benign	Het
Rapgef2	A	T	3: 79,000,010 (GRCm39)	D579E	probably damaging	Het
Rims2	T	A	15: 39,325,976 (GRCm39)	D769E	probably damaging	Het
Rptor	T	A	11: 119,615,887 (GRCm39)	C134S	probably damaging	Het
S100a1	A	G	3: 90,418,599 (GRCm39)	F72L	probably damaging	Het
Scube1	T	A	15: 83,606,146 (GRCm39)	D42V	probably damaging	Het
Sh3glb1	T	C	3: 144,418,446 (GRCm39)	D39G	probably damaging	Het
Sh3pxd2a	T	C	19: 47,261,689 (GRCm39)	T397A	probably benign	Het
Siglece	G	A	7: 43,300,956 (GRCm39)	T453M	probably damaging	Het
Slc26a1	G	A	5: 108,819,658 (GRCm39)	R514W	probably damaging	Het
Slc4a8	T	C	15: 100,685,093 (GRCm39)	V156A	probably benign	Het
Smchd1	A	T	17: 71,698,374 (GRCm39)	V1134E	probably damaging	Het
Sorbs2	A	G	8: 46,223,613 (GRCm39)	Y222C	probably damaging	Het
Sorcs3	G	T	19: 48,592,314 (GRCm39)	W326C	possibly damaging	Het
Taf2	A	G	15: 54,934,793 (GRCm39)	V45A	probably benign	Het
Tex16	T	C	X: 111,150,782 (GRCm39)	Y22H	probably benign	Het
Tiparp	A	T	3: 65,439,470 (GRCm39)	H80L	probably damaging	Het
Tmem71	T	A	15: 66,413,548 (GRCm39)	T175S	probably benign	Het
Tmem87b	T	A	2: 128,681,090 (GRCm39)	V338D	probably damaging	Het
Trdn	A	G	10: 33,240,004 (GRCm39)	K445R	probably damaging	Het
Trim14	A	G	4: 46,522,039 (GRCm39)	F213L	probably benign	Het
Tubgcp5	T	A	7: 55,464,768 (GRCm39)	S550T	probably benign	Het
Tufm	A	G	7: 126,089,644 (GRCm39)	D446G	probably benign	Het
Vipr1	A	T	9: 121,490,485 (GRCm39)	Y177F	possibly damaging	Het
Vmn2r116	A	C	17: 23,620,740 (GRCm39)	I825L	probably damaging	Het
Vmn2r12	G	T	5: 109,239,910 (GRCm39)	Q218K	probably damaging	Het
Vwa7	G	T	17: 35,242,919 (GRCm39)		probably null	Het
Ywhae	T	C	11: 75,646,491 (GRCm39)	V119A	probably damaging	Het
Zfand5	A	G	19: 21,257,888 (GRCm39)	R199G	probably damaging	Het
Zfp810	T	C	9: 22,189,828 (GRCm39)	Y360C	possibly damaging	Het
Zrsr2-ps1	A	G	11: 22,923,637 (GRCm39)	D137G	probably benign	Het

Other mutations in Igsf3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00783:Igsf3	APN	3	101,338,555 (GRCm39)	missense	probably damaging	0.99
IGL00907:Igsf3	APN	3	101,334,764 (GRCm39)	splice site	probably benign
IGL01321:Igsf3	APN	3	101,334,338 (GRCm39)	splice site	probably benign
IGL01340:Igsf3	APN	3	101,346,995 (GRCm39)	nonsense	probably null
IGL02291:Igsf3	APN	3	101,346,845 (GRCm39)	missense	probably damaging	1.00
Bunsen	UTSW	3	101,358,612 (GRCm39)	critical splice donor site	probably null
residue	UTSW	3	101,342,751 (GRCm39)	missense	probably damaging	0.99
weaksister	UTSW	3	101,358,393 (GRCm39)	nonsense	probably null
PIT4402001:Igsf3	UTSW	3	101,334,393 (GRCm39)	missense	probably benign	0.00
R0090:Igsf3	UTSW	3	101,342,968 (GRCm39)	missense	probably damaging	1.00
R0143:Igsf3	UTSW	3	101,342,917 (GRCm39)	missense	probably damaging	1.00
R0418:Igsf3	UTSW	3	101,342,751 (GRCm39)	missense	probably damaging	0.99
R0711:Igsf3	UTSW	3	101,334,709 (GRCm39)	missense	probably benign	0.31
R1195:Igsf3	UTSW	3	101,365,419 (GRCm39)	missense	probably benign	0.05
R1195:Igsf3	UTSW	3	101,365,419 (GRCm39)	missense	probably benign	0.05
R1195:Igsf3	UTSW	3	101,365,419 (GRCm39)	missense	probably benign	0.05
R1384:Igsf3	UTSW	3	101,358,612 (GRCm39)	critical splice donor site	probably null
R1594:Igsf3	UTSW	3	101,358,393 (GRCm39)	nonsense	probably null
R1624:Igsf3	UTSW	3	101,362,543 (GRCm39)	missense	probably benign	0.37
R1988:Igsf3	UTSW	3	101,338,612 (GRCm39)	missense	probably benign	0.03
R2072:Igsf3	UTSW	3	101,346,831 (GRCm39)	missense	probably benign	0.02
R4707:Igsf3	UTSW	3	101,365,410 (GRCm39)	missense	probably benign	0.06
R4976:Igsf3	UTSW	3	101,346,677 (GRCm39)	splice site	probably null
R4982:Igsf3	UTSW	3	101,342,983 (GRCm39)	missense	probably benign	0.42
R5008:Igsf3	UTSW	3	101,358,233 (GRCm39)	missense	probably damaging	0.97
R5119:Igsf3	UTSW	3	101,346,677 (GRCm39)	splice site	probably null
R5189:Igsf3	UTSW	3	101,338,843 (GRCm39)	missense	possibly damaging	0.64
R5456:Igsf3	UTSW	3	101,334,537 (GRCm39)	missense	probably benign	0.20
R5776:Igsf3	UTSW	3	101,332,796 (GRCm39)	missense	probably benign	0.01
R6112:Igsf3	UTSW	3	101,358,322 (GRCm39)	missense	probably damaging	1.00
R6383:Igsf3	UTSW	3	101,342,964 (GRCm39)	missense	probably benign	0.05
R6758:Igsf3	UTSW	3	101,332,814 (GRCm39)	missense	probably damaging	0.98
R7085:Igsf3	UTSW	3	101,362,805 (GRCm39)	missense	probably benign	0.12
R7310:Igsf3	UTSW	3	101,338,895 (GRCm39)	missense	probably benign	0.01
R7470:Igsf3	UTSW	3	101,358,391 (GRCm39)	missense	possibly damaging	0.67
R7707:Igsf3	UTSW	3	101,367,238 (GRCm39)	missense	probably benign	0.00
R7719:Igsf3	UTSW	3	101,342,857 (GRCm39)	missense	probably damaging	1.00
R7739:Igsf3	UTSW	3	101,342,847 (GRCm39)	missense	probably damaging	1.00
R8115:Igsf3	UTSW	3	101,362,595 (GRCm39)	missense	probably benign	0.01
R8128:Igsf3	UTSW	3	101,346,947 (GRCm39)	missense	probably damaging	1.00
R8221:Igsf3	UTSW	3	101,347,038 (GRCm39)	missense	probably damaging	1.00
R8716:Igsf3	UTSW	3	101,334,739 (GRCm39)	missense	probably damaging	1.00
R8730:Igsf3	UTSW	3	101,334,532 (GRCm39)	missense	probably benign	0.00
R9401:Igsf3	UTSW	3	101,333,075 (GRCm39)	missense	probably damaging	1.00
R9449:Igsf3	UTSW	3	101,358,322 (GRCm39)	missense	probably damaging	1.00
R9483:Igsf3	UTSW	3	101,346,904 (GRCm39)	missense	probably damaging	1.00
R9483:Igsf3	UTSW	3	101,346,817 (GRCm39)	missense	probably damaging	0.98
R9575:Igsf3	UTSW	3	101,338,625 (GRCm39)	missense	probably damaging	1.00
R9782:Igsf3	UTSW	3	101,338,612 (GRCm39)	missense	probably benign	0.03
X0027:Igsf3	UTSW	3	101,342,961 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GGCTTGGACTCAGATATCCTTGGC -3'
(R):5'- ACTTCTACTTACTGAGGGGCAGCAC -3'

Sequencing Primer
(F):5'- TCTCTCAAGATGAATACGGAGTC -3'
(R):5'- GTCTATGAACTCGCCAGTGAC -3'

Posted On

2014-05-23