Mutagenetix > Incidental Mutation

Incidental Mutation 'R1756:Dennd4b'

194838

Institutional Source

Beutler Lab

Gene Symbol

Dennd4b

Ensembl Gene

ENSMUSG00000042404

Gene Name

DENN domain containing 4B

Synonyms

MMRRC Submission

039788-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.162) question?

Stock #

R1756 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

90172492-90187976 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to G at 90178912 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Valine at position 559 (L559V)

Ref Sequence

ENSEMBL: ENSMUSP00000096514 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000098914] [ENSMUST00000129564]

AlphaFold

Q3U1Y4

Predicted Effect

probably damaging
Transcript: ENSMUST00000098914
AA Change: L559V

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000096514
Gene: ENSMUSG00000042404
AA Change: L559V

Domain	Start	End	E-Value	Type
low complexity region	8	15	N/A	INTRINSIC
low complexity region	43	57	N/A	INTRINSIC
uDENN	183	290	1.15e-29	SMART
DENN	324	508	5.26e-70	SMART
dDENN	573	647	1.75e-25	SMART
low complexity region	672	690	N/A	INTRINSIC
low complexity region	740	752	N/A	INTRINSIC
coiled coil region	902	928	N/A	INTRINSIC
low complexity region	1022	1038	N/A	INTRINSIC
low complexity region	1086	1096	N/A	INTRINSIC
low complexity region	1114	1127	N/A	INTRINSIC
low complexity region	1131	1148	N/A	INTRINSIC
low complexity region	1338	1350	N/A	INTRINSIC
low complexity region	1424	1439	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000129564
AA Change: L548V

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000117354
Gene: ENSMUSG00000042404
AA Change: L548V

Domain	Start	End	E-Value	Type
low complexity region	32	46	N/A	INTRINSIC
uDENN	172	279	1.15e-29	SMART
DENN	313	497	5.26e-70	SMART
dDENN	562	636	1.75e-25	SMART
low complexity region	661	679	N/A	INTRINSIC
low complexity region	729	741	N/A	INTRINSIC
coiled coil region	891	917	N/A	INTRINSIC
low complexity region	1011	1027	N/A	INTRINSIC
low complexity region	1075	1085	N/A	INTRINSIC
low complexity region	1103	1116	N/A	INTRINSIC
low complexity region	1120	1137	N/A	INTRINSIC
low complexity region	1327	1339	N/A	INTRINSIC
low complexity region	1413	1428	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000138376

SMART Domains

Protein: ENSMUSP00000116003
Gene: ENSMUSG00000042404

Domain	Start	End	E-Value	Type
coiled coil region	29	55	N/A	INTRINSIC
low complexity region	148	164	N/A	INTRINSIC
low complexity region	212	222	N/A	INTRINSIC
low complexity region	240	253	N/A	INTRINSIC
low complexity region	257	264	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000151648

SMART Domains

Protein: ENSMUSP00000121350
Gene: ENSMUSG00000042404

Domain	Start	End	E-Value	Type
uDENN	2	57	3.71e-6	SMART
Pfam:DENN	91	157	2.9e-13	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000156358

SMART Domains

Protein: ENSMUSP00000118483
Gene: ENSMUSG00000042404

Domain	Start	End	E-Value	Type
low complexity region	24	38	N/A	INTRINSIC
Blast:uDENN	39	97	9e-6	BLAST
Blast:uDENN	164	207	1e-22	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000183900

Meta Mutation Damage Score

0.1127

Coding Region Coverage

1x: 97.5%
3x: 96.9%
10x: 95.5%
20x: 93.0%

Validation Efficiency

100% (96/96)

Allele List at MGI

Other mutations in this stock

Total: 94 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A330008L17Rik	C	A	8: 100,148,514 (GRCm39)		noncoding transcript	Het
Acin1	A	G	14: 54,902,661 (GRCm39)	V377A	probably benign	Het
Adam39	A	T	8: 41,278,361 (GRCm39)	I251F	probably damaging	Het
Adnp2	A	T	18: 80,170,912 (GRCm39)	*1166K	probably null	Het
Akap12	T	A	10: 4,307,574 (GRCm39)	D1461E	probably benign	Het
Aopep	T	A	13: 63,215,875 (GRCm39)	H382Q	possibly damaging	Het
Apba1	A	G	19: 23,871,056 (GRCm39)	D296G	possibly damaging	Het
Apol7a	G	T	15: 77,277,671 (GRCm39)	L26M	possibly damaging	Het
Bcl2	C	T	1: 106,640,122 (GRCm39)	M163I	probably damaging	Het
Cap2	T	G	13: 46,684,489 (GRCm39)	I53R	probably benign	Het
Ccdc74a	T	C	16: 17,468,332 (GRCm39)	V318A	possibly damaging	Het
Ccnb2	A	G	9: 70,318,070 (GRCm39)	V234A	probably benign	Het
Cd207	C	T	6: 83,652,579 (GRCm39)	V184I	probably benign	Het
Cdk12	C	A	11: 98,132,587 (GRCm39)	C1005*	probably null	Het
Cep83	T	C	10: 94,586,129 (GRCm39)	S344P	probably damaging	Het
Ces1g	A	T	8: 94,033,582 (GRCm39)	Y447N	probably benign	Het
Cfap54	A	T	10: 92,883,923 (GRCm39)	L277Q	probably damaging	Het
Cfh	A	G	1: 140,028,615 (GRCm39)	Y1027H	probably damaging	Het
Clcnkb	T	A	4: 141,142,525 (GRCm39)	I28F	possibly damaging	Het
Clec4d	A	G	6: 123,244,068 (GRCm39)	D59G	probably damaging	Het
Colq	G	A	14: 31,269,409 (GRCm39)	P153S	probably damaging	Het
Crybg1	T	A	10: 43,862,275 (GRCm39)	T1500S	probably damaging	Het
Cyp2d34	T	A	15: 82,501,725 (GRCm39)	R262W	probably damaging	Het
Dhrs1	A	G	14: 55,976,766 (GRCm39)	V306A	probably benign	Het
Diaph1	A	T	18: 37,987,626 (GRCm39)	D1043E	possibly damaging	Het
Dis3	G	T	14: 99,323,539 (GRCm39)	D538E	probably damaging	Het
Dnai2	T	G	11: 114,641,206 (GRCm39)	S344A	probably benign	Het
Dner	C	T	1: 84,423,311 (GRCm39)	V431M	probably damaging	Het
Dnm1l	A	G	16: 16,160,559 (GRCm39)		probably null	Het
Eps15	T	G	4: 109,170,115 (GRCm39)	L139*	probably null	Het
Fam193a	T	A	5: 34,623,636 (GRCm39)	I55N	possibly damaging	Het
Gm10308	T	A	17: 91,396,385 (GRCm39)	Y102*	probably null	Het
Gm10509	A	G	17: 21,909,762 (GRCm39)	K30E	possibly damaging	Het
Gpr155	T	C	2: 73,197,921 (GRCm39)	M400V	probably benign	Het
H2-M10.2	T	C	17: 36,597,015 (GRCm39)		probably benign	Het
Heatr1	G	T	13: 12,411,341 (GRCm39)	A61S	probably benign	Het
Helb	G	T	10: 119,930,147 (GRCm39)	T744K	probably damaging	Het
Hmcn1	C	A	1: 150,474,781 (GRCm39)	W4702L	probably damaging	Het
Hmcn2	C	T	2: 31,286,132 (GRCm39)	R2095W	probably damaging	Het
Igfbp3	G	C	11: 7,158,461 (GRCm39)	D267E	probably damaging	Het
Ighmbp2	T	A	19: 3,318,669 (GRCm39)	H469L	probably damaging	Het
Kcnj3	A	C	2: 55,327,232 (GRCm39)	K7T	probably damaging	Het
Krtap5-5	T	G	7: 141,783,358 (GRCm39)	K97N	unknown	Het
Lcor	T	C	19: 41,547,705 (GRCm39)	S430P	probably benign	Het
Lpin1	A	G	12: 16,588,541 (GRCm39)	V883A	probably damaging	Het
Lrp1b	T	C	2: 41,000,837 (GRCm39)	Y2243C	probably damaging	Het
Lrrc46	G	A	11: 96,925,556 (GRCm39)		probably benign	Het
Man1c1	G	C	4: 134,430,749 (GRCm39)	P11R	probably damaging	Het
Mpdz	C	T	4: 81,225,114 (GRCm39)	V1438M	possibly damaging	Het
Muc21	A	T	17: 35,930,131 (GRCm39)		probably benign	Het
Ncbp1	T	A	4: 46,169,131 (GRCm39)	L635*	probably null	Het
Nipbl	T	C	15: 8,368,035 (GRCm39)	N1202D	possibly damaging	Het
Nphs1	A	G	7: 30,160,959 (GRCm39)	D196G	probably benign	Het
Nup58	A	T	14: 60,482,119 (GRCm39)		probably benign	Het
Or2b2b	A	G	13: 21,858,865 (GRCm39)	I83T	probably benign	Het
Or8b42	A	T	9: 38,342,291 (GRCm39)	I238F	probably benign	Het
Or8k16	A	G	2: 85,520,427 (GRCm39)	Y218C	probably damaging	Het
Pax8	A	T	2: 24,325,833 (GRCm39)	N350K	probably damaging	Het
Pik3cd	T	C	4: 149,743,207 (GRCm39)	K298E	probably benign	Het
Pkd1	C	T	17: 24,813,459 (GRCm39)	R4000C	probably damaging	Het
Pkn2	A	T	3: 142,516,488 (GRCm39)	V546D	possibly damaging	Het
Plcg2	A	G	8: 118,319,447 (GRCm39)	K673E	probably benign	Het
Pld4	T	G	12: 112,729,826 (GRCm39)		probably null	Het
Plek	A	T	11: 16,942,901 (GRCm39)	N130K	probably damaging	Het
Prune2	G	A	19: 17,101,068 (GRCm39)	D2191N	probably benign	Het
Ptgis	T	C	2: 167,048,723 (GRCm39)	Y431C	probably damaging	Het
Rhbdf2	T	C	11: 116,498,092 (GRCm39)	S36G	probably benign	Het
Rtn4ip1	C	T	10: 43,786,826 (GRCm39)	A178V	probably damaging	Het
Rxfp1	A	G	3: 79,578,188 (GRCm39)	S168P	probably benign	Het
Sec24a	A	G	11: 51,624,590 (GRCm39)		probably benign	Het
Shf	G	A	2: 122,199,163 (GRCm39)	P51S	probably damaging	Het
Slitrk6	C	T	14: 110,987,984 (GRCm39)	M574I	probably benign	Het
Slk	T	C	19: 47,611,116 (GRCm39)	F861L	probably damaging	Het
Smpd3	C	A	8: 106,991,603 (GRCm39)	A317S	probably benign	Het
Spopfm1	A	T	3: 94,173,525 (GRCm39)	M174L	probably benign	Het
Spz1	T	A	13: 92,711,633 (GRCm39)	Q281L	probably damaging	Het
Syde1	T	A	10: 78,422,814 (GRCm39)	R519S	probably benign	Het
Taf4	T	C	2: 179,618,324 (GRCm39)	H39R	unknown	Het
Tbx5	A	T	5: 119,983,178 (GRCm39)		probably null	Het
Tektl1	T	A	10: 78,583,031 (GRCm39)	K451M	probably damaging	Het
Tenm2	C	T	11: 35,954,004 (GRCm39)	G1236R	possibly damaging	Het
Th	G	A	7: 142,451,903 (GRCm39)	Q19*	probably null	Het
Tmprss11a	T	A	5: 86,568,038 (GRCm39)	I230F	probably damaging	Het
Tnfrsf14	T	A	4: 155,009,779 (GRCm39)	H50L	possibly damaging	Het
Tpp2	T	A	1: 44,017,885 (GRCm39)		probably null	Het
Trappc9	G	A	15: 72,897,816 (GRCm39)	R377W	probably damaging	Het
Trim2	A	G	3: 84,098,107 (GRCm39)	I398T	possibly damaging	Het
Trpc5	A	T	X: 143,264,222 (GRCm39)	S212T	probably damaging	Het
Ttn	A	G	2: 76,617,678 (GRCm39)		probably benign	Het
Unc80	A	G	1: 66,678,407 (GRCm39)	T2063A	possibly damaging	Het
Usp37	A	T	1: 74,518,814 (GRCm39)	S260T	probably benign	Het
Vcan	A	G	13: 89,839,800 (GRCm39)	S1915P	probably benign	Het
Vmn1r33	T	A	6: 66,589,282 (GRCm39)	I91F	possibly damaging	Het
Zfp422	T	C	6: 116,603,385 (GRCm39)	T205A	probably benign	Het

Other mutations in Dennd4b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00321:Dennd4b	APN	3	90,178,514 (GRCm39)	missense	possibly damaging	0.83
IGL00834:Dennd4b	APN	3	90,186,993 (GRCm39)	critical splice donor site	probably null
IGL01124:Dennd4b	APN	3	90,176,381 (GRCm39)	missense	possibly damaging	0.61
IGL01792:Dennd4b	APN	3	90,187,152 (GRCm39)	missense	probably damaging	0.96
IGL01895:Dennd4b	APN	3	90,182,874 (GRCm39)	missense	probably benign	0.00
IGL02533:Dennd4b	APN	3	90,179,617 (GRCm39)	missense	probably benign	0.02
IGL02630:Dennd4b	APN	3	90,180,284 (GRCm39)	missense	probably benign	0.00
R0107:Dennd4b	UTSW	3	90,180,043 (GRCm39)	missense	possibly damaging	0.92
R0143:Dennd4b	UTSW	3	90,179,671 (GRCm39)	missense	probably damaging	1.00
R1079:Dennd4b	UTSW	3	90,178,485 (GRCm39)	missense	probably benign
R1306:Dennd4b	UTSW	3	90,178,472 (GRCm39)	missense	probably benign	0.00
R1525:Dennd4b	UTSW	3	90,178,177 (GRCm39)	missense	probably damaging	0.97
R1959:Dennd4b	UTSW	3	90,176,080 (GRCm39)	missense	probably damaging	1.00
R1976:Dennd4b	UTSW	3	90,180,362 (GRCm39)	missense	probably damaging	1.00
R2184:Dennd4b	UTSW	3	90,182,847 (GRCm39)	missense	probably damaging	1.00
R2296:Dennd4b	UTSW	3	90,182,821 (GRCm39)	missense	probably damaging	1.00
R2406:Dennd4b	UTSW	3	90,182,795 (GRCm39)	missense	probably damaging	1.00
R2408:Dennd4b	UTSW	3	90,178,882 (GRCm39)	nonsense	probably null
R4691:Dennd4b	UTSW	3	90,179,619 (GRCm39)	missense	probably damaging	1.00
R5376:Dennd4b	UTSW	3	90,185,363 (GRCm39)	missense	probably benign	0.00
R5466:Dennd4b	UTSW	3	90,175,807 (GRCm39)	splice site	probably null
R5555:Dennd4b	UTSW	3	90,175,675 (GRCm39)	missense	probably damaging	1.00
R5556:Dennd4b	UTSW	3	90,175,675 (GRCm39)	missense	probably damaging	1.00
R5557:Dennd4b	UTSW	3	90,175,675 (GRCm39)	missense	probably damaging	1.00
R5605:Dennd4b	UTSW	3	90,175,675 (GRCm39)	missense	probably damaging	1.00
R5617:Dennd4b	UTSW	3	90,182,933 (GRCm39)	missense	probably benign
R5692:Dennd4b	UTSW	3	90,185,090 (GRCm39)	missense	probably damaging	1.00
R5790:Dennd4b	UTSW	3	90,184,757 (GRCm39)	missense	probably damaging	1.00
R5957:Dennd4b	UTSW	3	90,178,272 (GRCm39)	missense	probably damaging	1.00
R6130:Dennd4b	UTSW	3	90,183,566 (GRCm39)	missense	probably damaging	1.00
R6183:Dennd4b	UTSW	3	90,182,875 (GRCm39)	utr 3 prime	probably benign
R6505:Dennd4b	UTSW	3	90,174,918 (GRCm39)	missense	probably damaging	1.00
R6631:Dennd4b	UTSW	3	90,185,039 (GRCm39)	splice site	probably null
R6801:Dennd4b	UTSW	3	90,176,086 (GRCm39)	missense	probably damaging	0.98
R7409:Dennd4b	UTSW	3	90,181,259 (GRCm39)	missense	probably benign	0.15
R7457:Dennd4b	UTSW	3	90,176,622 (GRCm39)	missense	probably benign
R7650:Dennd4b	UTSW	3	90,176,056 (GRCm39)	nonsense	probably null
R8196:Dennd4b	UTSW	3	90,178,904 (GRCm39)	missense	probably damaging	1.00
R8208:Dennd4b	UTSW	3	90,178,278 (GRCm39)	missense	possibly damaging	0.78
R8444:Dennd4b	UTSW	3	90,181,259 (GRCm39)	missense	probably benign	0.27
R8502:Dennd4b	UTSW	3	90,181,165 (GRCm39)	missense	probably damaging	0.98
R8735:Dennd4b	UTSW	3	90,185,172 (GRCm39)	missense	probably damaging	1.00
R8933:Dennd4b	UTSW	3	90,186,523 (GRCm39)	missense	probably benign	0.05
R9031:Dennd4b	UTSW	3	90,178,188 (GRCm39)	missense	probably benign
R9335:Dennd4b	UTSW	3	90,175,611 (GRCm39)	missense	probably damaging	1.00
R9456:Dennd4b	UTSW	3	90,178,515 (GRCm39)	missense	probably damaging	1.00
R9747:Dennd4b	UTSW	3	90,177,828 (GRCm39)	missense	possibly damaging	0.76
X0024:Dennd4b	UTSW	3	90,178,278 (GRCm39)	missense	possibly damaging	0.78
Z1176:Dennd4b	UTSW	3	90,186,802 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- CCCTGGTGCAAGATCTGTCAGAAG -3'
(R):5'- ATTCCCTCCAAAACCAGAGTTGTGG -3'

Sequencing Primer
(F):5'- TGTCAGAAGCTGGTGGTGAAG -3'
(R):5'- TTCCGGTAACCTTTGAGCAG -3'

Posted On

2014-05-23