Mutagenetix > Incidental Mutation

Incidental Mutation 'R1758:Wdr62'

195080

Institutional Source

Beutler Lab

Gene Symbol

Wdr62

Ensembl Gene

ENSMUSG00000037020

Gene Name

WD repeat domain 62

Synonyms

2310038K02Rik

MMRRC Submission

039790-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1758 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

29939563-29979844 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 29967328 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Phenylalanine at position 309 (I309F)

Ref Sequence

ENSEMBL: ENSMUSP00000116772 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000108190] [ENSMUST00000145027]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000108190
AA Change: I309F

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000103825
Gene: ENSMUSG00000037020
AA Change: I309F

Domain	Start	End	E-Value	Type
low complexity region	27	53	N/A	INTRINSIC
WD40	101	142	4.24e-3	SMART
WD40	145	186	1.03e-1	SMART
WD40	189	226	7.4e0	SMART
WD40	284	322	3.55e1	SMART
WD40	353	388	1.85e0	SMART
WD40	395	442	2.98e-1	SMART
WD40	482	521	2.77e-1	SMART
WD40	524	566	2.3e0	SMART
WD40	570	610	4.18e-2	SMART
WD40	615	657	1.54e0	SMART
WD40	660	702	8.49e-3	SMART
WD40	705	744	3.61e-6	SMART
low complexity region	763	768	N/A	INTRINSIC
low complexity region	797	811	N/A	INTRINSIC
low complexity region	980	987	N/A	INTRINSIC
low complexity region	1215	1226	N/A	INTRINSIC
low complexity region	1302	1313	N/A	INTRINSIC
low complexity region	1477	1497	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000118272

Predicted Effect

probably damaging
Transcript: ENSMUST00000145027
AA Change: I309F

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000116772
Gene: ENSMUSG00000037020
AA Change: I309F

Domain	Start	End	E-Value	Type
low complexity region	27	53	N/A	INTRINSIC
WD40	101	142	4.24e-3	SMART
WD40	145	186	1.03e-1	SMART
WD40	189	226	7.4e0	SMART
WD40	284	322	3.55e1	SMART
WD40	353	388	1.85e0	SMART
WD40	395	442	2.98e-1	SMART
WD40	482	521	2.77e-1	SMART
WD40	524	566	2.3e0	SMART
WD40	570	610	4.18e-2	SMART
WD40	615	657	1.54e0	SMART
WD40	660	702	8.49e-3	SMART
WD40	705	744	3.61e-6	SMART
low complexity region	763	768	N/A	INTRINSIC
low complexity region	797	811	N/A	INTRINSIC
low complexity region	980	987	N/A	INTRINSIC

Coding Region Coverage

1x: 97.5%
3x: 97.0%
10x: 95.6%
20x: 93.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is proposed to play a role in cerebral cortical development. Mutations in this gene have been associated with microencephaly, cortical malformations, and mental retardation. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2011]
PHENOTYPE: Mice for a hypomorphic allele exhibit reduced brain size due to decreased neural progenitor cells. Cells show spindle instability, spindle assembly checkpoint activation, mitotic arrest and cell death. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 95 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700029H14Rik	T	C	8: 13,612,237 (GRCm39)	R38G	possibly damaging	Het
4930590J08Rik	T	C	6: 91,892,203 (GRCm39)	V155A	possibly damaging	Het
Adgb	A	G	10: 10,302,349 (GRCm39)	S406P	probably damaging	Het
Adgrb2	C	A	4: 129,905,668 (GRCm39)	T893N	probably damaging	Het
Adgrf5	T	C	17: 43,735,484 (GRCm39)		probably null	Het
Alms1	T	A	6: 85,605,487 (GRCm39)	I2379N	probably damaging	Het
Arap3	C	T	18: 38,122,965 (GRCm39)	V512I	probably benign	Het
Atf4	C	T	15: 80,141,414 (GRCm39)	T268I	probably benign	Het
Cblif	G	A	19: 11,735,179 (GRCm39)	M266I	probably damaging	Het
Ccdc154	T	C	17: 25,382,156 (GRCm39)	L25P	probably damaging	Het
Ccdc9	G	A	7: 16,010,161 (GRCm39)	S381F	probably damaging	Het
Cdk17	C	T	10: 93,044,112 (GRCm39)	T17M	probably damaging	Het
Cep128	T	C	12: 91,314,352 (GRCm39)	N142S	probably benign	Het
Cep78	A	G	19: 15,936,900 (GRCm39)	I602T	probably damaging	Het
Clasp1	C	T	1: 118,475,755 (GRCm39)	T935I	probably damaging	Het
Cnr1	T	C	4: 33,945,000 (GRCm39)	S463P	probably damaging	Het
Cntnap1	T	A	11: 101,075,449 (GRCm39)	W876R	probably damaging	Het
Cntnap5c	A	G	17: 58,349,545 (GRCm39)	D286G	probably damaging	Het
Copa	C	T	1: 171,931,711 (GRCm39)	R321C	probably damaging	Het
Cspg4b	A	G	13: 113,505,266 (GRCm39)	T2132A	possibly damaging	Het
Ctla2a	T	G	13: 61,083,256 (GRCm39)	E98A	probably damaging	Het
Cux1	A	T	5: 136,421,176 (GRCm39)	D183E	probably damaging	Het
Cxcl15	A	C	5: 90,949,323 (GRCm39)	T163P	unknown	Het
Ddias	T	C	7: 92,508,571 (GRCm39)	N448S	probably benign	Het
Dhx8	T	C	11: 101,657,564 (GRCm39)	F1152S	probably damaging	Het
Dnah12	C	A	14: 26,488,071 (GRCm39)	Q992K	probably benign	Het
Eno3	G	T	11: 70,552,251 (GRCm39)	W301L	possibly damaging	Het
Faap100	A	T	11: 120,268,059 (GRCm39)	V238E	probably damaging	Het
Fgf4	A	G	7: 144,416,049 (GRCm39)	S137G	probably benign	Het
Fhod3	A	C	18: 25,253,367 (GRCm39)	D1439A	possibly damaging	Het
Frem2	A	G	3: 53,560,778 (GRCm39)	L1243P	probably damaging	Het
Gkn3	T	G	6: 87,365,817 (GRCm39)	M1L	probably benign	Het
Gm10250	T	C	15: 5,150,509 (GRCm39)		probably benign	Het
Gm12185	T	C	11: 48,798,859 (GRCm39)	T545A	possibly damaging	Het
Gm14226	T	A	2: 154,867,378 (GRCm39)	L445H	probably damaging	Het
Gm3404	A	T	5: 146,463,036 (GRCm39)	M73L	probably benign	Het
Gm973	G	T	1: 59,673,169 (GRCm39)	R976S	unknown	Het
Gpr146	A	T	5: 139,379,137 (GRCm39)	H313L	probably benign	Het
Gys2	T	A	6: 142,418,432 (GRCm39)	E32D	probably damaging	Het
Igsf10	G	A	3: 59,236,617 (GRCm39)	T1188I	probably benign	Het
Igsf9b	A	T	9: 27,245,548 (GRCm39)	T1172S	possibly damaging	Het
Itga8	T	A	2: 12,270,144 (GRCm39)	N114I	possibly damaging	Het
Itsn2	T	A	12: 4,708,160 (GRCm39)	V795E	possibly damaging	Het
Kdm1b	T	A	13: 47,214,244 (GRCm39)	S197T	probably benign	Het
Kif5c	G	A	2: 49,613,145 (GRCm39)	R161Q	probably benign	Het
Krt33b	T	C	11: 99,916,361 (GRCm39)	Y232C	probably damaging	Het
Lonrf2	G	A	1: 38,852,357 (GRCm39)	P165S	probably benign	Het
Lrp1	A	T	10: 127,424,453 (GRCm39)	N744K	possibly damaging	Het
Mcm10	C	A	2: 5,008,861 (GRCm39)	L369F	probably damaging	Het
Muc5ac	T	A	7: 141,355,268 (GRCm39)	I1018N	possibly damaging	Het
Myom2	T	C	8: 15,115,795 (GRCm39)	L70P	probably benign	Het
Myt1l	T	A	12: 29,877,241 (GRCm39)	N297K	unknown	Het
Ncr1	C	T	7: 4,343,807 (GRCm39)	T98I	probably benign	Het
Nek3	T	C	8: 22,650,278 (GRCm39)	E78G	probably damaging	Het
Nfatc3	T	A	8: 106,825,768 (GRCm39)	N606K	probably damaging	Het
Nup107	T	G	10: 117,597,248 (GRCm39)	D669A	probably damaging	Het
Or10ag52	A	T	2: 87,043,758 (GRCm39)	Q174L	probably benign	Het
Or10c1	A	T	17: 37,522,204 (GRCm39)	I180N	possibly damaging	Het
Or4c3	T	C	2: 89,851,673 (GRCm39)	T246A	probably benign	Het
Or8b55	A	T	9: 38,726,871 (GRCm39)	H24L	probably benign	Het
Pcnx1	T	C	12: 82,030,258 (GRCm39)	V1711A	probably benign	Het
Pik3c3	A	G	18: 30,410,063 (GRCm39)	D99G	probably damaging	Het
Pinx1	C	A	14: 64,157,024 (GRCm39)	T317K	probably benign	Het
Ppargc1b	G	T	18: 61,431,857 (GRCm39)		probably null	Het
Pradc1	T	A	6: 85,424,203 (GRCm39)	I119F	possibly damaging	Het
Psat1	G	T	19: 15,892,243 (GRCm39)	T242K	probably damaging	Het
Psma6	G	A	12: 55,454,317 (GRCm39)	C28Y	probably damaging	Het
Pyurf	A	T	6: 57,668,817 (GRCm39)	C58*	probably null	Het
Rab3gap2	C	A	1: 185,016,081 (GRCm39)	A1331E	probably benign	Het
Rnase4	T	C	14: 51,342,722 (GRCm39)	*149Q	probably null	Het
Ruvbl2	T	C	7: 45,074,586 (GRCm39)	K184R	probably benign	Het
Scn7a	T	G	2: 66,510,527 (GRCm39)	M1292L	probably benign	Het
Scn7a	A	T	2: 66,531,231 (GRCm39)	Y549N	probably damaging	Het
Selp	A	G	1: 163,959,854 (GRCm39)	D370G	possibly damaging	Het
Slc22a15	G	A	3: 101,767,769 (GRCm39)	Q386*	probably null	Het
Slc22a29	A	G	19: 8,195,126 (GRCm39)		probably null	Het
Slc26a7	A	C	4: 14,548,491 (GRCm39)	I266S	possibly damaging	Het
Smpd4	T	C	16: 17,443,872 (GRCm39)	S112P	probably damaging	Het
Smpd4	T	A	16: 17,458,744 (GRCm39)	L165Q	probably damaging	Het
Snx33	A	G	9: 56,833,982 (GRCm39)	I29T	probably benign	Het
Spen	G	A	4: 141,203,686 (GRCm39)	P1647L	unknown	Het
Strip2	T	C	6: 29,941,940 (GRCm39)		probably null	Het
Swsap1	C	T	9: 21,867,280 (GRCm39)	R75*	probably null	Het
Tesl1	A	G	X: 23,772,990 (GRCm39)	I164V	probably benign	Het
Tmem210	C	T	2: 25,178,435 (GRCm39)	T32I	probably damaging	Het
Tnn	C	T	1: 159,975,154 (GRCm39)	R91H	possibly damaging	Het
Tnni1	G	A	1: 135,736,420 (GRCm39)	R94H	probably damaging	Het
Tnrc6c	T	A	11: 117,651,556 (GRCm39)	V1693D	probably benign	Het
Trip4	G	A	9: 65,782,259 (GRCm39)	Q158*	probably null	Het
Ttc39b	T	C	4: 83,155,586 (GRCm39)	E474G	probably damaging	Het
Usp50	C	A	2: 126,617,782 (GRCm39)	C221F	probably damaging	Het
Vmn1r171	T	C	7: 23,331,781 (GRCm39)	I2T	probably benign	Het
Xdh	A	T	17: 74,217,204 (GRCm39)	V688E	probably damaging	Het
Zfyve26	A	G	12: 79,285,718 (GRCm39)	L2353P	probably damaging	Het
Zgpat	C	A	2: 181,020,633 (GRCm39)	R269S	probably damaging	Het

Other mutations in Wdr62

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00094:Wdr62	APN	7	29,942,948 (GRCm39)	missense	probably benign	0.00
IGL00428:Wdr62	APN	7	29,970,177 (GRCm39)	missense	probably damaging	0.99
IGL00579:Wdr62	APN	7	29,967,320 (GRCm39)	missense	probably damaging	1.00
IGL00709:Wdr62	APN	7	29,941,486 (GRCm39)	missense	probably benign	0.05
IGL00924:Wdr62	APN	7	29,942,231 (GRCm39)	missense	probably damaging	1.00
IGL00924:Wdr62	APN	7	29,964,643 (GRCm39)	missense	probably damaging	0.99
IGL00956:Wdr62	APN	7	29,960,764 (GRCm39)	missense	probably damaging	0.96
IGL01016:Wdr62	APN	7	29,953,676 (GRCm39)	missense	probably benign	0.39
IGL01118:Wdr62	APN	7	29,942,206 (GRCm39)	missense	probably damaging	0.96
IGL01458:Wdr62	APN	7	29,941,187 (GRCm39)	missense	probably benign	0.08
IGL01977:Wdr62	APN	7	29,957,526 (GRCm39)	missense	probably damaging	1.00
IGL02065:Wdr62	APN	7	29,942,894 (GRCm39)	missense	possibly damaging	0.59
IGL02155:Wdr62	APN	7	29,962,068 (GRCm39)	missense	probably damaging	1.00
IGL02260:Wdr62	APN	7	29,970,207 (GRCm39)	missense	probably damaging	1.00
IGL02404:Wdr62	APN	7	29,967,298 (GRCm39)	missense	probably damaging	1.00
IGL02491:Wdr62	APN	7	29,942,184 (GRCm39)	missense	probably benign	0.19
IGL02556:Wdr62	APN	7	29,944,709 (GRCm39)	splice site	probably null
IGL02739:Wdr62	APN	7	29,941,885 (GRCm39)	nonsense	probably null
IGL03387:Wdr62	APN	7	29,970,199 (GRCm39)	missense	possibly damaging	0.90
ivoire	UTSW	7	29,971,045 (GRCm39)	missense	probably damaging	1.00
I0000:Wdr62	UTSW	7	29,944,752 (GRCm39)	missense	probably benign	0.03
R0304:Wdr62	UTSW	7	29,942,299 (GRCm39)	missense	probably benign	0.20
R0371:Wdr62	UTSW	7	29,941,583 (GRCm39)	missense	possibly damaging	0.56
R0400:Wdr62	UTSW	7	29,940,887 (GRCm39)	missense	possibly damaging	0.81
R0621:Wdr62	UTSW	7	29,953,486 (GRCm39)	missense	possibly damaging	0.94
R0634:Wdr62	UTSW	7	29,969,599 (GRCm39)	missense	probably damaging	0.98
R2205:Wdr62	UTSW	7	29,957,574 (GRCm39)	critical splice acceptor site	probably null
R2254:Wdr62	UTSW	7	29,967,328 (GRCm39)	missense	probably damaging	0.97
R2255:Wdr62	UTSW	7	29,967,328 (GRCm39)	missense	probably damaging	0.97
R2566:Wdr62	UTSW	7	29,973,424 (GRCm39)	missense	probably damaging	1.00
R2851:Wdr62	UTSW	7	29,960,862 (GRCm39)	missense	possibly damaging	0.70
R3150:Wdr62	UTSW	7	29,971,095 (GRCm39)	missense	possibly damaging	0.94
R4355:Wdr62	UTSW	7	29,941,673 (GRCm39)	missense	probably damaging	1.00
R4517:Wdr62	UTSW	7	29,969,683 (GRCm39)	missense	probably damaging	1.00
R4839:Wdr62	UTSW	7	29,970,111 (GRCm39)	missense	probably damaging	1.00
R4839:Wdr62	UTSW	7	29,940,890 (GRCm39)	missense	probably benign	0.00
R5193:Wdr62	UTSW	7	29,964,592 (GRCm39)	missense	probably damaging	0.99
R5289:Wdr62	UTSW	7	29,967,300 (GRCm39)	missense	probably damaging	1.00
R5306:Wdr62	UTSW	7	29,964,688 (GRCm39)	missense	possibly damaging	0.94
R5878:Wdr62	UTSW	7	29,940,772 (GRCm39)	missense	probably benign
R5942:Wdr62	UTSW	7	29,942,504 (GRCm39)	nonsense	probably null
R6051:Wdr62	UTSW	7	29,960,809 (GRCm39)	missense	possibly damaging	0.69
R6237:Wdr62	UTSW	7	29,941,860 (GRCm39)	missense	probably damaging	1.00
R6727:Wdr62	UTSW	7	29,971,045 (GRCm39)	missense	probably damaging	1.00
R7158:Wdr62	UTSW	7	29,970,163 (GRCm39)	missense	possibly damaging	0.77
R7208:Wdr62	UTSW	7	29,951,761 (GRCm39)	missense	probably damaging	0.97
R7237:Wdr62	UTSW	7	29,969,869 (GRCm39)	splice site	probably null
R7336:Wdr62	UTSW	7	29,943,342 (GRCm39)	missense	probably damaging	0.98
R7559:Wdr62	UTSW	7	29,970,198 (GRCm39)	missense	probably damaging	0.98
R7845:Wdr62	UTSW	7	29,964,667 (GRCm39)	missense	possibly damaging	0.79
R7936:Wdr62	UTSW	7	29,964,584 (GRCm39)	missense	probably damaging	1.00
R8002:Wdr62	UTSW	7	29,951,785 (GRCm39)	missense	probably damaging	1.00
R8347:Wdr62	UTSW	7	29,962,128 (GRCm39)	missense	possibly damaging	0.88
R8399:Wdr62	UTSW	7	29,957,486 (GRCm39)	missense	probably damaging	1.00
R8954:Wdr62	UTSW	7	29,953,454 (GRCm39)	missense	probably damaging	1.00
R9044:Wdr62	UTSW	7	29,962,062 (GRCm39)	missense	probably benign
R9166:Wdr62	UTSW	7	29,941,874 (GRCm39)	missense	probably damaging	1.00
R9212:Wdr62	UTSW	7	29,942,563 (GRCm39)	missense	probably damaging	1.00
R9748:Wdr62	UTSW	7	29,953,466 (GRCm39)	missense	possibly damaging	0.80
Z1176:Wdr62	UTSW	7	29,955,353 (GRCm39)	missense	probably benign	0.00
Z1186:Wdr62	UTSW	7	29,950,184 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGCATGGCTGGATGCTATCCAAC -3'
(R):5'- CTGCCACTGTCTGCTGAAGACATAC -3'

Sequencing Primer
(F):5'- ATGCTATCCAACAGATTCTGGGC -3'
(R):5'- gaggtcagatgagggaatcag -3'

Posted On

2014-05-23