Mutagenetix > Incidental Mutation

Incidental Mutation 'R1773:Npnt'

196793

Institutional Source

Beutler Lab

Gene Symbol

Npnt

Ensembl Gene

ENSMUSG00000040998

Gene Name

nephronectin

Synonyms

1110009H02Rik, POEM

MMRRC Submission

039804-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.162) question?

Stock #

R1773 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

132881745-132950291 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 132904693 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Leucine at position 423 (Q423L)

Ref Sequence

ENSEMBL: ENSMUSP00000091505 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000042729] [ENSMUST00000042744] [ENSMUST00000093971] [ENSMUST00000117164] [ENSMUST00000117456] [ENSMUST00000117811]

AlphaFold

Q91V88

Predicted Effect

possibly damaging
Transcript: ENSMUST00000042729
AA Change: Q392L

PolyPhen 2 Score 0.478 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000040071
Gene: ENSMUSG00000040998
AA Change: Q392L

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
EGF	76	104	1.53e-1	SMART
EGF_CA	106	145	1.85e-9	SMART
EGF	149	185	1.73e1	SMART
EGF	189	230	7.53e-1	SMART
EGF_CA	231	271	5.31e-10	SMART
low complexity region	324	383	N/A	INTRINSIC
Pfam:MAM	439	578	8.2e-28	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000042744
AA Change: Q375L

PolyPhen 2 Score 0.347 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000040684
Gene: ENSMUSG00000040998
AA Change: Q375L

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
EGF	59	87	7.6e-4	SMART
EGF_CA	89	128	9e-12	SMART
EGF	132	168	8.5e-2	SMART
EGF	172	213	3.5e-3	SMART
EGF_CA	214	254	2.6e-12	SMART
low complexity region	307	366	N/A	INTRINSIC
MAM	417	560	1.4e-11	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000093971
AA Change: Q423L

PolyPhen 2 Score 0.620 (Sensitivity: 0.87; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000091505
Gene: ENSMUSG00000040998
AA Change: Q423L

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
EGF	76	104	1.53e-1	SMART
EGF_CA	137	176	1.85e-9	SMART
EGF	180	216	1.73e1	SMART
EGF	220	261	7.53e-1	SMART
EGF_CA	262	302	5.31e-10	SMART
low complexity region	355	414	N/A	INTRINSIC
Pfam:MAM	470	609	1.9e-23	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000117164
AA Change: Q406L

PolyPhen 2 Score 0.478 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000113419
Gene: ENSMUSG00000040998
AA Change: Q406L

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
EGF	59	87	1.53e-1	SMART
EGF_CA	120	159	1.85e-9	SMART
EGF	163	199	1.73e1	SMART
EGF	203	244	7.53e-1	SMART
EGF_CA	245	285	5.31e-10	SMART
low complexity region	338	397	N/A	INTRINSIC
Pfam:MAM	453	592	8.6e-28	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000117456
AA Change: Q271L

PolyPhen 2 Score 0.390 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000112816
Gene: ENSMUSG00000040998
AA Change: Q271L

Domain	Start	End	E-Value	Type
EGF	28	64	1.73e1	SMART
EGF	68	109	7.53e-1	SMART
EGF_CA	110	150	5.31e-10	SMART
low complexity region	203	262	N/A	INTRINSIC
Pfam:MAM	318	457	5.3e-28	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000117811
AA Change: Q375L

PolyPhen 2 Score 0.347 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000113752
Gene: ENSMUSG00000040998
AA Change: Q375L

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
EGF	59	87	1.53e-1	SMART
EGF_CA	89	128	1.85e-9	SMART
EGF	132	168	1.73e1	SMART
EGF	172	213	7.53e-1	SMART
EGF_CA	214	254	5.31e-10	SMART
low complexity region	307	366	N/A	INTRINSIC
Pfam:MAM	393	532	3.3e-28	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132732

Coding Region Coverage

1x: 97.5%
3x: 96.9%
10x: 95.4%
20x: 92.9%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a null allele frequently exhibit kidney agenesis or hypoplasia attributed to a delay in the invasion of the metanephric mesenchyme by the ureteric bud at an early stage of kidney development. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 96 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310022A10Rik	A	G	7: 27,580,595 (GRCm38)	K334E	probably damaging	Het
Abca12	A	G	1: 71,288,596 (GRCm38)	Y1442H	probably damaging	Het
Acot12	A	G	13: 91,757,557 (GRCm38)	T79A	probably benign	Het
Adipoq	A	C	16: 23,155,238 (GRCm38)	Q26P	unknown	Het
Afg2a	T	C	3: 37,439,185 (GRCm38)	F515L	probably damaging	Het
Akap13	T	A	7: 75,683,451 (GRCm38)	N1582K	possibly damaging	Het
Alg9	A	G	9: 50,779,096 (GRCm38)	T133A	probably benign	Het
Anks3	T	C	16: 4,947,294 (GRCm38)	T418A	probably benign	Het
Ano3	A	C	2: 110,761,455 (GRCm38)	L37R	probably damaging	Het
Ano9	A	G	7: 141,108,378 (GRCm38)	F178L	possibly damaging	Het
Arhgef12	A	G	9: 43,005,542 (GRCm38)		probably null	Het
Arl16	T	A	11: 120,465,763 (GRCm38)	I137F	possibly damaging	Het
Brpf1	T	A	6: 113,319,931 (GRCm38)	S959T	possibly damaging	Het
Ccdc27	C	T	4: 154,041,765 (GRCm38)	R89Q	unknown	Het
Cd109	A	C	9: 78,703,724 (GRCm38)	Q1207H	probably benign	Het
Cd14	A	T	18: 36,725,304 (GRCm38)	V366D	possibly damaging	Het
Cep290	G	A	10: 100,510,573 (GRCm38)	V538I	probably benign	Het
Cep57	G	A	9: 13,816,068 (GRCm38)	A202V	probably damaging	Het
Chl1	T	C	6: 103,647,331 (GRCm38)		probably null	Het
Cmah	T	G	13: 24,417,299 (GRCm38)	F29L	probably benign	Het
Cracd	G	T	5: 76,867,205 (GRCm38)	A42S	possibly damaging	Het
Crybg1	A	G	10: 43,992,548 (GRCm38)	V1378A	possibly damaging	Het
Cryzl2	A	G	1: 157,470,722 (GRCm38)	K227R	probably benign	Het
D130043K22Rik	T	G	13: 24,882,602 (GRCm38)	V794G	possibly damaging	Het
Ddx4	T	A	13: 112,599,902 (GRCm38)	T645S	probably benign	Het
Dhcr7	C	T	7: 143,847,458 (GRCm38)	R453C	possibly damaging	Het
Dhx8	T	C	11: 101,752,363 (GRCm38)	Y754H	possibly damaging	Het
Dip2b	T	A	15: 100,193,961 (GRCm38)	D860E	probably benign	Het
Dnah7a	T	C	1: 53,432,887 (GRCm38)		probably null	Het
Dst	A	G	1: 34,291,899 (GRCm38)	D6937G	probably damaging	Het
Dusp1	A	G	17: 26,507,107 (GRCm38)	I204T	probably damaging	Het
Dync2h1	T	A	9: 7,128,256 (GRCm38)	Q1859L	probably damaging	Het
E4f1	C	A	17: 24,446,584 (GRCm38)	G328V	probably damaging	Het
Eml5	T	C	12: 98,798,839 (GRCm38)	Y1617C	probably damaging	Het
Espn	G	T	4: 152,128,229 (GRCm38)	P622Q	probably damaging	Het
Fam184b	G	A	5: 45,584,334 (GRCm38)	P185L	possibly damaging	Het
Fn1	T	A	1: 71,637,383 (GRCm38)	D563V	probably damaging	Het
Gad2	A	G	2: 22,690,207 (GRCm38)	Y540C	probably benign	Het
Garin1b	T	C	6: 29,334,153 (GRCm38)	S335P	possibly damaging	Het
Gdf11	T	C	10: 128,891,294 (GRCm38)	D131G	probably damaging	Het
Gm19965	T	A	1: 116,821,259 (GRCm38)	Y223*	probably null	Het
H2-M10.6	A	G	17: 36,812,184 (GRCm38)	K3R	probably benign	Het
Hid1	A	G	11: 115,348,510 (GRCm38)	Y776H	probably damaging	Het
Hivep3	A	T	4: 120,098,837 (GRCm38)	K1450I	probably damaging	Het
Icam5	T	C	9: 21,033,525 (GRCm38)	L128P	possibly damaging	Het
Idnk	T	C	13: 58,157,712 (GRCm38)	V9A	probably damaging	Het
Il4ra	A	T	7: 125,567,182 (GRCm38)	T33S	possibly damaging	Het
Ino80	A	G	2: 119,418,409 (GRCm38)	V990A	probably benign	Het
Krtap4-9	T	C	11: 99,785,570 (GRCm38)		probably benign	Het
Lrrk2	A	G	15: 91,779,981 (GRCm38)	I1974V	possibly damaging	Het
Mcm3ap	C	T	10: 76,471,160 (GRCm38)	A369V	probably benign	Het
Nek6	A	G	2: 38,582,419 (GRCm38)	M252V	probably benign	Het
Nfasc	T	A	1: 132,610,839 (GRCm38)	I443F	probably damaging	Het
Nme8	T	G	13: 19,697,036 (GRCm38)	M1L	probably damaging	Het
Nup133	A	T	8: 123,930,983 (GRCm38)	C404*	probably null	Het
Or2b7	T	C	13: 21,555,812 (GRCm38)	D70G	probably damaging	Het
Or4c124	A	G	2: 89,325,742 (GRCm38)	V146A	probably benign	Het
Or4f14b	A	G	2: 111,944,859 (GRCm38)	V199A	possibly damaging	Het
Or56a4	T	C	7: 105,156,983 (GRCm38)	E233G	probably benign	Het
Or5an1c	T	C	19: 12,241,659 (GRCm38)	M1V	probably null	Het
Or6c213	A	G	10: 129,738,443 (GRCm38)	L158S	probably damaging	Het
Otog	T	A	7: 46,288,159 (GRCm38)	I1764N	probably benign	Het
Oxa1l	A	G	14: 54,363,452 (GRCm38)	I127M	probably benign	Het
P4hb	C	A	11: 120,572,726 (GRCm38)	V28F	probably damaging	Het
Pbld2	C	T	10: 63,054,371 (GRCm38)	A186V	probably benign	Het
Pdzph1	G	T	17: 58,974,813 (GRCm38)	T158K	probably damaging	Het
Pgm1	T	A	5: 64,107,851 (GRCm38)		probably null	Het
Phip	A	T	9: 82,876,189 (GRCm38)	S1484T	probably benign	Het
Pikfyve	T	C	1: 65,192,271 (GRCm38)	L100P	probably damaging	Het
Pikfyve	T	C	1: 65,246,370 (GRCm38)	S923P	probably benign	Het
Pla2g4e	A	G	2: 120,244,721 (GRCm38)	S63P	probably benign	Het
Plekhh2	A	G	17: 84,599,265 (GRCm38)	E1176G	probably damaging	Het
Prlr	T	A	15: 10,325,318 (GRCm38)	Y192*	probably null	Het
Pten	T	A	19: 32,798,072 (GRCm38)	C71S	probably damaging	Het
Rbbp8nl	A	G	2: 180,281,194 (GRCm38)	L202P	probably benign	Het
Ripor2	T	A	13: 24,701,254 (GRCm38)	S491T	probably benign	Het
Robo1	A	T	16: 73,004,511 (GRCm38)	I1008F	probably benign	Het
Scg2	T	C	1: 79,435,635 (GRCm38)	N417S	probably benign	Het
Scn8a	A	G	15: 101,039,615 (GRCm38)	I1581V	probably damaging	Het
Slc22a8	T	A	19: 8,594,229 (GRCm38)	I108N	probably damaging	Het
Slc9a8	A	T	2: 167,471,465 (GRCm38)	T416S	possibly damaging	Het
Spata32	T	A	11: 103,208,818 (GRCm38)	E287V	probably damaging	Het
Tgfbrap1	C	T	1: 43,075,352 (GRCm38)	G196D	probably damaging	Het
Tgm5	G	T	2: 121,077,650 (GRCm38)	T15K	possibly damaging	Het
Tmc1	C	T	19: 20,826,501 (GRCm38)		probably null	Het
Tmem177	T	C	1: 119,910,576 (GRCm38)	I124M	possibly damaging	Het
Trim30a	A	G	7: 104,435,901 (GRCm38)	F34S	probably damaging	Het
Tsn	T	C	1: 118,305,239 (GRCm38)	T112A	probably benign	Het
Tspyl5	T	G	15: 33,686,776 (GRCm38)	N341T	probably benign	Het
Vmn2r108	C	T	17: 20,469,073 (GRCm38)	C540Y	probably damaging	Het
Vrtn	C	T	12: 84,650,224 (GRCm38)	R583W	probably damaging	Het
Wnt1	T	C	15: 98,791,757 (GRCm38)	S142P	probably damaging	Het
Wrn	A	T	8: 33,343,561 (GRCm38)	I108N	probably damaging	Het
Zfhx2	A	C	14: 55,072,891 (GRCm38)	C733G	possibly damaging	Het
Zfp219	T	C	14: 52,007,106 (GRCm38)	T539A	probably damaging	Het
Zswim8	T	A	14: 20,711,530 (GRCm38)	M177K	probably damaging	Het

Other mutations in Npnt

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00731:Npnt	APN	3	132,904,657 (GRCm38)	critical splice donor site	probably null
IGL01457:Npnt	APN	3	132,885,982 (GRCm38)	missense	probably damaging	1.00
IGL01954:Npnt	APN	3	132,909,963 (GRCm38)	missense	probably damaging	1.00
IGL01999:Npnt	APN	3	132,908,399 (GRCm38)	missense	probably damaging	1.00
IGL02012:Npnt	APN	3	132,908,397 (GRCm38)	missense	probably damaging	1.00
IGL02025:Npnt	APN	3	132,890,762 (GRCm38)	critical splice donor site	probably null
IGL02637:Npnt	APN	3	132,884,510 (GRCm38)	missense	possibly damaging	0.90
R0234:Npnt	UTSW	3	132,914,414 (GRCm38)	missense	possibly damaging	0.82
R0234:Npnt	UTSW	3	132,914,414 (GRCm38)	missense	possibly damaging	0.82
R1680:Npnt	UTSW	3	132,906,802 (GRCm38)	missense	probably benign	0.00
R1729:Npnt	UTSW	3	132,914,397 (GRCm38)	nonsense	probably null
R1980:Npnt	UTSW	3	132,948,132 (GRCm38)	missense	probably benign	0.04
R1982:Npnt	UTSW	3	132,948,132 (GRCm38)	missense	probably benign	0.04
R2338:Npnt	UTSW	3	132,891,409 (GRCm38)	missense	probably damaging	1.00
R3800:Npnt	UTSW	3	132,906,763 (GRCm38)	missense	probably damaging	1.00
R4739:Npnt	UTSW	3	132,904,691 (GRCm38)	missense	possibly damaging	0.93
R4790:Npnt	UTSW	3	132,890,762 (GRCm38)	critical splice donor site	probably benign
R5008:Npnt	UTSW	3	132,906,457 (GRCm38)	missense	probably damaging	1.00
R5446:Npnt	UTSW	3	132,908,369 (GRCm38)	missense	probably damaging	1.00
R5471:Npnt	UTSW	3	132,914,387 (GRCm38)	missense	probably benign	0.05
R5538:Npnt	UTSW	3	132,904,963 (GRCm38)	missense	probably damaging	1.00
R5673:Npnt	UTSW	3	132,917,497 (GRCm38)	missense	probably damaging	0.97
R5683:Npnt	UTSW	3	132,906,840 (GRCm38)	splice site	probably null
R5827:Npnt	UTSW	3	132,906,775 (GRCm38)	missense	possibly damaging	0.89
R5857:Npnt	UTSW	3	132,908,349 (GRCm38)	missense	probably damaging	1.00
R5910:Npnt	UTSW	3	132,906,418 (GRCm38)	missense	probably damaging	1.00
R6208:Npnt	UTSW	3	132,950,013 (GRCm38)	unclassified	probably benign
R6358:Npnt	UTSW	3	132,904,718 (GRCm38)	missense	probably benign	0.18
R6875:Npnt	UTSW	3	132,909,910 (GRCm38)	missense	probably damaging	1.00
R7025:Npnt	UTSW	3	132,908,396 (GRCm38)	missense	probably damaging	1.00
R7145:Npnt	UTSW	3	132,909,931 (GRCm38)	missense	probably benign	0.01
R7166:Npnt	UTSW	3	132,948,128 (GRCm38)	missense	probably damaging	1.00
R7287:Npnt	UTSW	3	132,906,802 (GRCm38)	missense	probably benign	0.00
R7344:Npnt	UTSW	3	132,908,339 (GRCm38)	splice site	probably null
R8344:Npnt	UTSW	3	132,908,456 (GRCm38)	missense	probably damaging	1.00
R8717:Npnt	UTSW	3	132,908,375 (GRCm38)	missense	probably damaging	1.00
R8873:Npnt	UTSW	3	132,950,055 (GRCm38)	start gained	probably benign
R8903:Npnt	UTSW	3	132,886,003 (GRCm38)	missense	probably damaging	1.00
R9414:Npnt	UTSW	3	132,906,355 (GRCm38)	missense	probably benign	0.00
R9420:Npnt	UTSW	3	132,948,105 (GRCm38)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- TTGTAAGAGTCCTCCCGACCTACAC -3'
(R):5'- AAGTACAAGGTGGCCCCTGAAGAC -3'

Sequencing Primer
(F):5'- gctgaagagatggcttggtg -3'
(R):5'- TGAAGACACCATATATTCCTCCTG -3'

Posted On

2014-05-23