Incidental Mutation 'R1774:Slc27a5'
ID 196923
Institutional Source Beutler Lab
Gene Symbol Slc27a5
Ensembl Gene ENSMUSG00000030382
Gene Name solute carrier family 27 (fatty acid transporter), member 5
Synonyms VLCSH2, FACVL3, VLCS-H2, FATP5
MMRRC Submission 039805-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.138) question?
Stock # R1774 (G1)
Quality Score 225
Status Not validated
Chromosome 7
Chromosomal Location 12722273-12732119 bp(-) (GRCm39)
Type of Mutation nonsense
DNA Base Change (assembly) A to T at 12731534 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Cysteine to Stop codon at position 23 (C23*)
Gene Model predicted gene model for transcript(s): [ENSMUST00000032539] [ENSMUST00000120903]
AlphaFold Q4LDG0
Predicted Effect probably null
Transcript: ENSMUST00000032539
AA Change: C152*
SMART Domains Protein: ENSMUSP00000032539
Gene: ENSMUSG00000030382
AA Change: C152*

DomainStartEndE-ValueType
signal peptide 1 20 N/A INTRINSIC
transmembrane domain 29 51 N/A INTRINSIC
transmembrane domain 58 77 N/A INTRINSIC
Pfam:AMP-binding 119 557 1.3e-64 PFAM
Pfam:AMP-binding_C 565 641 1.4e-11 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000120903
AA Change: C152*
SMART Domains Protein: ENSMUSP00000112495
Gene: ENSMUSG00000030382
AA Change: C152*

DomainStartEndE-ValueType
signal peptide 1 20 N/A INTRINSIC
transmembrane domain 29 51 N/A INTRINSIC
transmembrane domain 58 77 N/A INTRINSIC
Pfam:AMP-binding 119 414 2e-42 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000133977
AA Change: C23*
SMART Domains Protein: ENSMUSP00000117208
Gene: ENSMUSG00000030382
AA Change: C23*

DomainStartEndE-ValueType
Pfam:AMP-binding 1 102 3.3e-8 PFAM
Pfam:AMP-binding 100 195 1.3e-16 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000155192
Predicted Effect noncoding transcript
Transcript: ENSMUST00000209577
Coding Region Coverage
  • 1x: 97.4%
  • 3x: 96.8%
  • 10x: 95.2%
  • 20x: 92.0%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is an isozyme of very long-chain acyl-CoA synthetase (VLCS). It is capable of activating very long-chain fatty-acids containing 24- and 26-carbons. It is expressed in liver and associated with endoplasmic reticulum but not with peroxisomes. Its primary role is in fatty acid elongation or complex lipid synthesis rather than in degradation. This gene has a mouse ortholog. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a null allele exhibit altered lipid homeostasis. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 85 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700018F24Rik T C 5: 144,982,351 (GRCm39) V312A probably damaging Het
2810408A11Rik A G 11: 69,791,453 (GRCm39) V42A probably damaging Het
Akap8l C T 17: 32,551,457 (GRCm39) R511H probably damaging Het
Angpt1 T A 15: 42,387,012 (GRCm39) Q114L probably damaging Het
Apc2 T C 10: 80,144,964 (GRCm39) I625T probably damaging Het
Atg2a T C 19: 6,300,628 (GRCm39) V735A probably benign Het
Birc6 T A 17: 74,947,008 (GRCm39) I2909N probably damaging Het
C7 C G 15: 5,041,557 (GRCm39) D450H probably damaging Het
Cachd1 C T 4: 100,821,632 (GRCm39) T403I probably damaging Het
Cachd1 T A 4: 100,824,240 (GRCm39) F560L probably benign Het
Cacna2d2 A T 9: 107,403,350 (GRCm39) Y944F probably benign Het
Cdkal1 C T 13: 30,034,031 (GRCm39) D21N probably damaging Het
Col18a1 T C 10: 76,895,815 (GRCm39) R901G probably damaging Het
Col27a1 C T 4: 63,143,950 (GRCm39) P546L probably damaging Het
Cps1 C T 1: 67,210,041 (GRCm39) R624W possibly damaging Het
Cyp11a1 A T 9: 57,925,643 (GRCm39) I93F probably benign Het
Cyp2c40 G C 19: 39,775,250 (GRCm39) T334R probably damaging Het
Cyp4f37 A G 17: 32,848,864 (GRCm39) D244G possibly damaging Het
D630003M21Rik A T 2: 158,062,390 (GRCm39) D43E probably damaging Het
Ep400 C A 5: 110,833,357 (GRCm39) C1955F unknown Het
Ethe1 G A 7: 24,293,371 (GRCm39) V6I probably benign Het
F5 C A 1: 164,020,104 (GRCm39) Q860K probably benign Het
Fasn T C 11: 120,707,997 (GRCm39) Y685C probably damaging Het
Gga2 T G 7: 121,611,444 (GRCm39) D38A probably damaging Het
Gm43302 T A 5: 105,423,660 (GRCm39) I438F probably benign Het
Grm1 T A 10: 10,955,610 (GRCm39) T225S possibly damaging Het
Hic2 G T 16: 17,076,511 (GRCm39) V447L probably damaging Het
Hsf2 G A 10: 57,388,242 (GRCm39) C462Y probably damaging Het
Ice1 T C 13: 70,752,672 (GRCm39) D1138G probably damaging Het
Il6 A G 5: 30,224,433 (GRCm39) T158A probably benign Het
Inpp5d T A 1: 87,595,611 (GRCm39) V120E probably benign Het
Iqca1 T C 1: 90,008,625 (GRCm39) N456S probably benign Het
Itgal T A 7: 126,908,794 (GRCm39) probably null Het
Lrrc66 G C 5: 73,768,198 (GRCm39) Q248E probably benign Het
Lrrc7 T A 3: 157,865,929 (GRCm39) M1271L possibly damaging Het
Lrrc74a T C 12: 86,795,827 (GRCm39) S267P probably damaging Het
Map2 T C 1: 66,453,233 (GRCm39) S550P probably damaging Het
Mapk8ip3 A T 17: 25,143,119 (GRCm39) probably null Het
Mdm4 A C 1: 132,924,384 (GRCm39) S246A probably damaging Het
Med23 A G 10: 24,779,584 (GRCm39) E887G probably damaging Het
Mta1 C T 12: 113,091,659 (GRCm39) A254V probably damaging Het
Myh2 A G 11: 67,064,300 (GRCm39) Y85C possibly damaging Het
Myo1g A G 11: 6,465,988 (GRCm39) Y366H probably damaging Het
Nalcn G A 14: 123,515,678 (GRCm39) P1708S probably benign Het
Nlrp9c A T 7: 26,093,543 (GRCm39) S41T probably benign Het
Nptx2 T A 5: 144,490,248 (GRCm39) S226T possibly damaging Het
Nup85 T A 11: 115,473,771 (GRCm39) S562T probably benign Het
Nxpe5 T C 5: 138,237,797 (GRCm39) V107A probably benign Het
Obi1 A G 14: 104,717,098 (GRCm39) V425A possibly damaging Het
Oga T C 19: 45,765,423 (GRCm39) E128G probably benign Het
Or10ac1 A T 6: 42,515,453 (GRCm39) F168I probably damaging Het
Or10al7 A G 17: 38,366,328 (GRCm39) V43A probably benign Het
Or13c3 T A 4: 52,855,674 (GRCm39) I280F probably benign Het
Or6p1 A G 1: 174,258,905 (GRCm39) T304A probably benign Het
Pcdhb12 C T 18: 37,569,495 (GRCm39) P214S possibly damaging Het
Pcdhb5 T A 18: 37,455,725 (GRCm39) F702I probably damaging Het
Pcnx1 T C 12: 82,022,094 (GRCm39) F1475S probably damaging Het
Pde5a C A 3: 122,523,013 (GRCm39) T40N probably benign Het
Pnpla2 T A 7: 141,039,481 (GRCm39) V398E probably damaging Het
Pramel19 G A 4: 101,797,655 (GRCm39) V18M probably benign Het
Pwwp4a G T X: 72,171,261 (GRCm39) G218C probably damaging Het
Rab20 T C 8: 11,504,223 (GRCm39) K159R probably benign Het
Rfwd3 C T 8: 112,014,874 (GRCm39) R326Q probably damaging Het
Rgs12 T A 5: 35,123,747 (GRCm39) V510D probably benign Het
Slamf6 T C 1: 171,770,154 (GRCm39) probably benign Het
Slc35e2 T C 4: 155,694,621 (GRCm39) V56A possibly damaging Het
Slx4ip T C 2: 136,909,643 (GRCm39) S143P probably damaging Het
Stat5a C T 11: 100,770,112 (GRCm39) S463F probably damaging Het
Svep1 T C 4: 58,146,562 (GRCm39) D360G possibly damaging Het
Tas2r143 A T 6: 42,377,305 (GRCm39) D45V probably damaging Het
Tdrd5 G T 1: 156,105,079 (GRCm39) R516S probably damaging Het
Thy1 A G 9: 43,958,636 (GRCm39) D126G probably benign Het
Tspear C T 10: 77,709,019 (GRCm39) T415I probably benign Het
Ttll5 C A 12: 85,980,176 (GRCm39) T920K probably benign Het
Tut4 T C 4: 108,365,152 (GRCm39) F542L probably damaging Het
Umod T C 7: 119,076,574 (GRCm39) E64G possibly damaging Het
Usf3 A G 16: 44,036,033 (GRCm39) N171S probably damaging Het
Vmn1r23 T A 6: 57,903,675 (GRCm39) R34S probably damaging Het
Wasf1 C G 10: 40,810,475 (GRCm39) P239R possibly damaging Het
Wdr95 C T 5: 149,487,857 (GRCm39) R164* probably null Het
Zan C A 5: 137,418,251 (GRCm39) C2949F unknown Het
Zbed4 T C 15: 88,665,080 (GRCm39) S383P probably benign Het
Zfand5 T A 19: 21,253,895 (GRCm39) C33S probably damaging Het
Zfp12 A G 5: 143,230,984 (GRCm39) Y437C probably damaging Het
Zfp451 A C 1: 33,852,849 (GRCm39) S22A probably benign Het
Other mutations in Slc27a5
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00592:Slc27a5 APN 7 12,722,566 (GRCm39) missense probably benign 0.08
IGL00906:Slc27a5 APN 7 12,724,984 (GRCm39) missense probably benign 0.00
IGL01067:Slc27a5 APN 7 12,722,999 (GRCm39) missense probably damaging 1.00
IGL02101:Slc27a5 APN 7 12,727,270 (GRCm39) missense possibly damaging 0.95
IGL02148:Slc27a5 APN 7 12,728,878 (GRCm39) missense probably damaging 0.97
IGL02165:Slc27a5 APN 7 12,728,875 (GRCm39) missense probably damaging 0.99
IGL02324:Slc27a5 APN 7 12,731,487 (GRCm39) missense probably benign 0.00
IGL02879:Slc27a5 APN 7 12,728,971 (GRCm39) splice site probably benign
R1519:Slc27a5 UTSW 7 12,722,386 (GRCm39) splice site probably null
R1662:Slc27a5 UTSW 7 12,725,173 (GRCm39) missense probably damaging 1.00
R2012:Slc27a5 UTSW 7 12,731,634 (GRCm39) missense probably damaging 0.98
R2020:Slc27a5 UTSW 7 12,727,339 (GRCm39) missense probably damaging 1.00
R2886:Slc27a5 UTSW 7 12,723,487 (GRCm39) unclassified probably benign
R4234:Slc27a5 UTSW 7 12,722,370 (GRCm39) missense probably benign 0.01
R4855:Slc27a5 UTSW 7 12,722,560 (GRCm39) missense probably benign 0.00
R5126:Slc27a5 UTSW 7 12,725,247 (GRCm39) missense probably damaging 1.00
R5450:Slc27a5 UTSW 7 12,728,869 (GRCm39) missense probably benign 0.04
R5712:Slc27a5 UTSW 7 12,732,010 (GRCm39) unclassified probably benign
R6302:Slc27a5 UTSW 7 12,722,479 (GRCm39) missense probably damaging 1.00
R6346:Slc27a5 UTSW 7 12,724,899 (GRCm39) missense possibly damaging 0.75
R6866:Slc27a5 UTSW 7 12,731,443 (GRCm39) missense probably benign 0.00
R6921:Slc27a5 UTSW 7 12,725,135 (GRCm39) missense probably damaging 1.00
R7329:Slc27a5 UTSW 7 12,725,089 (GRCm39) missense possibly damaging 0.75
R8017:Slc27a5 UTSW 7 12,723,329 (GRCm39) missense probably damaging 1.00
R8019:Slc27a5 UTSW 7 12,723,329 (GRCm39) missense probably damaging 1.00
R8312:Slc27a5 UTSW 7 12,725,214 (GRCm39) missense probably damaging 1.00
R8793:Slc27a5 UTSW 7 12,723,296 (GRCm39) missense probably benign 0.16
R8966:Slc27a5 UTSW 7 12,725,090 (GRCm39) missense probably benign 0.00
R8980:Slc27a5 UTSW 7 12,725,090 (GRCm39) missense probably benign 0.00
R9066:Slc27a5 UTSW 7 12,722,530 (GRCm39) missense possibly damaging 0.64
R9106:Slc27a5 UTSW 7 12,725,097 (GRCm39) missense probably benign 0.21
R9191:Slc27a5 UTSW 7 12,725,247 (GRCm39) missense probably damaging 1.00
R9275:Slc27a5 UTSW 7 12,731,640 (GRCm39) missense probably damaging 1.00
Z1177:Slc27a5 UTSW 7 12,722,782 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GCTCTCTGCCTAGCTTCCAGAAAC -3'
(R):5'- GTTCAGGCGACGCCTTAACAAAC -3'

Sequencing Primer
(F):5'- AGCTCCGTACAGAGTGTAGC -3'
(R):5'- AACATCCTCCAGAGACCTTTGTG -3'
Posted On 2014-05-23